Wall clock time and date at job start Mon Mar 30 2020 00:34:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 115.55079 * 2 1 4 4 N 1.46504 * 109.46780 * 269.01409 * 3 2 1 5 5 C 1.34769 * 119.99845 * 185.03282 * 4 3 2 6 6 O 1.21692 * 120.00405 * 359.97438 * 5 4 3 7 7 C 1.46374 * 120.00082 * 179.97438 * 5 4 3 8 8 H 1.08006 * 119.99947 * 0.02562 * 7 5 4 9 9 C 1.40052 * 120.00344 * 179.97438 * 7 5 4 10 10 N 1.30668 * 119.99446 * 0.02562 * 9 7 5 11 11 Si 1.86806 * 120.00078 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.46894 * 59.99906 * 11 9 7 13 13 H 1.48497 * 109.46766 * 179.97438 * 11 9 7 14 14 H 1.48501 * 109.47076 * 300.00282 * 11 9 7 15 15 C 1.52998 * 117.49734 * 214.32139 * 2 1 3 16 16 C 1.52996 * 60.03447 * 252.47838 * 15 2 1 17 17 H 1.09002 * 117.49443 * 107.50226 * 16 15 2 18 18 C 1.50699 * 117.50022 * 252.52436 * 16 15 2 19 19 C 1.38234 * 120.00100 * 8.33184 * 18 16 15 20 20 C 1.38235 * 119.99921 * 179.79112 * 19 18 16 21 21 C 1.38238 * 119.99956 * 0.46337 * 20 19 18 22 22 C 1.38231 * 119.99865 * 359.76967 * 21 20 19 23 23 C 1.38235 * 120.00297 * 0.02562 * 22 21 20 24 24 H 1.08997 * 109.47333 * 200.22204 * 1 2 3 25 25 H 1.08997 * 109.46854 * 320.22599 * 1 2 3 26 26 H 1.09001 * 109.46948 * 80.22442 * 1 2 3 27 27 H 1.08995 * 109.47108 * 29.01096 * 3 2 1 28 28 H 1.08994 * 109.46836 * 149.01744 * 3 2 1 29 29 H 0.96998 * 119.99704 * 5.02557 * 4 3 2 30 30 H 0.97003 * 119.99406 * 180.02562 * 10 9 7 31 31 H 1.08998 * 117.50172 * 359.97438 * 15 2 1 32 32 H 1.09006 * 117.49695 * 144.97569 * 15 2 1 33 33 H 1.07995 * 120.00034 * 0.02562 * 19 18 16 34 34 H 1.08001 * 119.99951 * 180.26093 * 20 19 18 35 35 H 1.08000 * 119.99783 * 179.79362 * 21 20 19 36 36 H 1.07998 * 119.99802 * 179.97438 * 22 21 20 37 37 H 1.07994 * 119.99952 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1900 1.3804 0.0000 4 7 2.4220 1.8106 -1.3811 5 6 3.0879 2.9562 -1.6271 6 8 3.4960 3.6335 -0.7021 7 6 3.3202 3.3859 -3.0069 8 1 2.9577 2.7850 -3.8279 9 6 4.0117 4.5766 -3.2626 10 7 4.4499 5.3038 -2.2693 11 14 4.3076 5.1252 -5.0236 12 1 3.0037 5.3132 -5.7092 13 1 5.0556 6.4081 -5.0233 14 1 5.0979 4.0908 -5.7382 15 6 2.2365 -1.1208 -0.7652 16 6 2.2376 -1.1215 0.7648 17 1 1.6130 -1.8596 1.2681 18 6 3.5307 -0.7813 1.4598 19 6 4.6077 -0.3177 0.7277 20 6 5.7925 -0.0016 1.3658 21 6 5.9033 -0.1581 2.7349 22 6 4.8279 -0.6262 3.4663 23 6 3.6417 -0.9384 2.8287 24 1 -0.3634 -0.9643 0.3552 25 1 -0.3633 0.7898 0.6575 26 1 -0.3633 0.1745 -1.0128 27 1 1.5359 2.0958 0.4984 28 1 3.1415 1.3281 0.5290 29 1 2.0964 1.2709 -2.1184 30 1 4.9285 6.1287 -2.4464 31 1 1.6113 -1.8585 -1.2683 32 1 3.1712 -0.8747 -1.2691 33 1 4.5224 -0.1990 -0.3423 34 1 6.6326 0.3646 0.7944 35 1 6.8301 0.0858 3.2330 36 1 4.9146 -0.7489 4.5358 37 1 2.8017 -1.3045 3.4001 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355009333.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:34:01 Heat of formation + Delta-G solvation = 2.757172 kcal Electronic energy + Delta-G solvation = -19019.190530 eV Core-core repulsion = 16147.685419 eV Total energy + Delta-G solvation = -2871.505111 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.91330 -37.74638 -36.58126 -32.83502 -32.03727 -30.84397 -30.69166 -28.14544 -26.95139 -24.81550 -23.65168 -22.21605 -20.50013 -19.54532 -18.83312 -17.27423 -16.48883 -15.31573 -15.29149 -14.87653 -14.43933 -14.22152 -14.00412 -13.63786 -13.15640 -12.97984 -12.81237 -12.55062 -12.35296 -12.14519 -11.73169 -11.37536 -11.16493 -11.02539 -10.92199 -10.76433 -10.55436 -10.36614 -10.24277 -10.09751 -9.69008 -8.81023 -8.64850 -8.29513 -7.53659 -7.37040 -6.13651 -4.59123 1.53348 1.64406 3.17691 3.22492 3.24332 3.71810 4.12847 4.22034 4.64363 4.65935 4.83859 5.00100 5.07606 5.21048 5.24257 5.28189 5.34258 5.42281 5.68255 5.76316 5.83171 5.90111 5.91826 5.97722 6.17155 6.18664 6.26469 6.27378 6.33194 6.62749 6.67781 6.71036 6.78662 6.87214 7.22979 7.47150 8.00327 8.18312 8.38867 9.06944 9.62582 10.65778 10.85530 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.021290 B = 0.005757 C = 0.004936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.831807 B = 4862.069885 C = 5671.771667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.121 4.121 3 C 0.159 3.841 4 N -0.763 5.763 5 C 0.555 3.445 6 O -0.581 6.581 7 C -0.547 4.547 8 H 0.066 0.934 9 C 0.088 3.912 10 N -0.769 5.769 11 Si 0.906 3.094 12 H -0.268 1.268 13 H -0.281 1.281 14 H -0.268 1.268 15 C -0.164 4.164 16 C -0.109 4.109 17 H 0.110 0.890 18 C -0.050 4.050 19 C -0.104 4.104 20 C -0.112 4.112 21 C -0.126 4.126 22 C -0.124 4.124 23 C -0.118 4.118 24 H 0.053 0.947 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.045 0.955 28 H 0.066 0.934 29 H 0.379 0.621 30 H 0.268 0.732 31 H 0.096 0.904 32 H 0.103 0.897 33 H 0.126 0.874 34 H 0.121 0.879 35 H 0.118 0.882 36 H 0.118 0.882 37 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.640 -13.712 5.778 15.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.121 4.121 3 C 0.035 3.965 4 N -0.418 5.418 5 C 0.358 3.642 6 O -0.463 6.463 7 C -0.584 4.584 8 H 0.084 0.916 9 C -0.131 4.131 10 N -0.398 5.398 11 Si 0.731 3.269 12 H -0.193 1.193 13 H -0.206 1.206 14 H -0.193 1.193 15 C -0.201 4.201 16 C -0.127 4.127 17 H 0.128 0.872 18 C -0.050 4.050 19 C -0.121 4.121 20 C -0.130 4.130 21 C -0.144 4.144 22 C -0.142 4.142 23 C -0.136 4.136 24 H 0.072 0.928 25 H 0.080 0.920 26 H 0.081 0.919 27 H 0.064 0.936 28 H 0.084 0.916 29 H 0.210 0.790 30 H 0.078 0.922 31 H 0.114 0.886 32 H 0.121 0.879 33 H 0.144 0.856 34 H 0.139 0.861 35 H 0.136 0.864 36 H 0.136 0.864 37 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -2.238 -13.020 6.550 14.745 hybrid contribution -0.034 0.077 -1.200 1.203 sum -2.272 -12.943 5.350 14.188 Atomic orbital electron populations 1.21330 0.91831 1.01404 1.02219 1.21938 0.94735 0.91736 1.03733 1.20555 0.99084 0.89828 0.87078 1.46108 1.63697 1.27267 1.04768 1.18190 0.77061 0.78451 0.90463 1.90605 1.54367 1.54802 1.46558 1.20851 1.38626 1.07824 0.91074 0.91619 1.25691 0.93704 0.95774 0.97952 1.70019 1.27004 1.10984 1.31768 0.86473 0.78982 0.78227 0.83267 1.19338 1.20607 1.19339 1.23173 1.03052 1.00910 0.92933 1.21275 0.96113 1.01513 0.93817 0.87197 1.19089 0.93648 0.98884 0.93371 1.21162 0.92573 0.97807 1.00605 1.21168 0.98017 0.99090 0.94773 1.21106 0.98768 1.00253 0.94316 1.21032 0.93483 1.00278 0.99445 1.20866 0.97637 1.01329 0.93758 0.92836 0.92022 0.91886 0.93648 0.91642 0.78961 0.92154 0.88594 0.87900 0.85594 0.86065 0.86436 0.86445 0.86440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.39 9.79 37.16 0.36 -1.03 16 2 C -0.12 -1.79 2.24 -154.47 -0.35 -2.14 16 3 C 0.16 3.19 5.31 -4.04 -0.02 3.17 16 4 N -0.76 -17.20 5.40 -61.72 -0.33 -17.53 16 5 C 0.55 15.94 7.75 -12.99 -0.10 15.84 16 6 O -0.58 -19.13 15.02 5.20 0.08 -19.05 16 7 C -0.55 -15.56 9.54 -35.63 -0.34 -15.90 16 8 H 0.07 1.71 7.85 -52.48 -0.41 1.30 16 9 C 0.09 2.49 5.50 -17.37 -0.10 2.40 16 10 N -0.77 -23.37 11.83 55.55 0.66 -22.71 16 11 Si 0.91 20.32 29.56 -169.99 -5.02 15.30 16 12 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 13 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 14 H -0.27 -5.85 7.11 56.52 0.40 -5.44 16 15 C -0.16 -2.17 8.82 -26.73 -0.24 -2.41 16 16 C -0.11 -1.45 5.69 -91.73 -0.52 -1.97 16 17 H 0.11 1.24 8.09 -51.93 -0.42 0.82 16 18 C -0.05 -0.74 4.76 -104.62 -0.50 -1.24 16 19 C -0.10 -1.71 7.17 -39.58 -0.28 -1.99 16 20 C -0.11 -1.77 10.05 -39.58 -0.40 -2.17 16 21 C -0.13 -1.76 10.05 -39.58 -0.40 -2.16 16 22 C -0.12 -1.62 10.05 -39.59 -0.40 -2.02 16 23 C -0.12 -1.59 9.74 -39.58 -0.39 -1.98 16 24 H 0.05 0.55 7.95 -51.93 -0.41 0.14 16 25 H 0.06 0.79 7.98 -51.93 -0.41 0.38 16 26 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.05 0.98 7.92 -51.93 -0.41 0.57 16 28 H 0.07 1.44 4.85 -51.93 -0.25 1.19 16 29 H 0.38 7.58 8.18 -40.82 -0.33 7.25 16 30 H 0.27 7.41 8.29 -40.82 -0.34 7.07 16 31 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.10 1.50 6.17 -51.93 -0.32 1.18 16 33 H 0.13 2.18 5.95 -52.49 -0.31 1.87 16 34 H 0.12 1.81 8.06 -52.49 -0.42 1.38 16 35 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 36 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 37 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 LS Contribution 311.30 15.07 4.69 4.69 Total: -1.00 -34.27 311.30 -8.55 -42.82 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: -4.96 Total: 10.08 kcal Atomic # 6 Polarization: -9.94 SS G_CDS: -3.66 Total: -13.60 kcal Atomic # 7 Polarization: -40.57 SS G_CDS: 0.32 Total: -40.24 kcal Atomic # 8 Polarization: -19.13 SS G_CDS: 0.08 Total: -19.05 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -34.27 -8.55 -42.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355009333.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.577 kcal (2) G-P(sol) polarization free energy of solvation -34.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.820 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds