Wall clock time and date at job start Mon Mar 30 2020 00:34:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 115.55079 * 2 1 4 4 N 1.46504 * 109.46780 * 269.01409 * 3 2 1 5 5 C 1.34769 * 119.99845 * 185.03282 * 4 3 2 6 6 O 1.21692 * 120.00405 * 359.97438 * 5 4 3 7 7 C 1.46374 * 120.00082 * 179.97438 * 5 4 3 8 8 H 1.08006 * 119.99947 * 0.02562 * 7 5 4 9 9 C 1.40052 * 120.00344 * 179.97438 * 7 5 4 10 10 N 1.30668 * 119.99446 * 0.02562 * 9 7 5 11 11 Si 1.86806 * 120.00078 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.46894 * 59.99906 * 11 9 7 13 13 H 1.48497 * 109.46766 * 179.97438 * 11 9 7 14 14 H 1.48501 * 109.47076 * 300.00282 * 11 9 7 15 15 C 1.52998 * 117.49734 * 214.32139 * 2 1 3 16 16 C 1.52996 * 60.03447 * 252.47838 * 15 2 1 17 17 H 1.09002 * 117.49443 * 107.50226 * 16 15 2 18 18 C 1.50699 * 117.50022 * 252.52436 * 16 15 2 19 19 C 1.38234 * 120.00100 * 8.33184 * 18 16 15 20 20 C 1.38235 * 119.99921 * 179.79112 * 19 18 16 21 21 C 1.38238 * 119.99956 * 0.46337 * 20 19 18 22 22 C 1.38231 * 119.99865 * 359.76967 * 21 20 19 23 23 C 1.38235 * 120.00297 * 0.02562 * 22 21 20 24 24 H 1.08997 * 109.47333 * 200.22204 * 1 2 3 25 25 H 1.08997 * 109.46854 * 320.22599 * 1 2 3 26 26 H 1.09001 * 109.46948 * 80.22442 * 1 2 3 27 27 H 1.08995 * 109.47108 * 29.01096 * 3 2 1 28 28 H 1.08994 * 109.46836 * 149.01744 * 3 2 1 29 29 H 0.96998 * 119.99704 * 5.02557 * 4 3 2 30 30 H 0.97003 * 119.99406 * 180.02562 * 10 9 7 31 31 H 1.08998 * 117.50172 * 359.97438 * 15 2 1 32 32 H 1.09006 * 117.49695 * 144.97569 * 15 2 1 33 33 H 1.07995 * 120.00034 * 0.02562 * 19 18 16 34 34 H 1.08001 * 119.99951 * 180.26093 * 20 19 18 35 35 H 1.08000 * 119.99783 * 179.79362 * 21 20 19 36 36 H 1.07998 * 119.99802 * 179.97438 * 22 21 20 37 37 H 1.07994 * 119.99952 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1900 1.3804 0.0000 4 7 2.4220 1.8106 -1.3811 5 6 3.0879 2.9562 -1.6271 6 8 3.4960 3.6335 -0.7021 7 6 3.3202 3.3859 -3.0069 8 1 2.9577 2.7850 -3.8279 9 6 4.0117 4.5766 -3.2626 10 7 4.4499 5.3038 -2.2693 11 14 4.3076 5.1252 -5.0236 12 1 3.0037 5.3132 -5.7092 13 1 5.0556 6.4081 -5.0233 14 1 5.0979 4.0908 -5.7382 15 6 2.2365 -1.1208 -0.7652 16 6 2.2376 -1.1215 0.7648 17 1 1.6130 -1.8596 1.2681 18 6 3.5307 -0.7813 1.4598 19 6 4.6077 -0.3177 0.7277 20 6 5.7925 -0.0016 1.3658 21 6 5.9033 -0.1581 2.7349 22 6 4.8279 -0.6262 3.4663 23 6 3.6417 -0.9384 2.8287 24 1 -0.3634 -0.9643 0.3552 25 1 -0.3633 0.7898 0.6575 26 1 -0.3633 0.1745 -1.0128 27 1 1.5359 2.0958 0.4984 28 1 3.1415 1.3281 0.5290 29 1 2.0964 1.2709 -2.1184 30 1 4.9285 6.1287 -2.4464 31 1 1.6113 -1.8585 -1.2683 32 1 3.1712 -0.8747 -1.2691 33 1 4.5224 -0.1990 -0.3423 34 1 6.6326 0.3646 0.7944 35 1 6.8301 0.0858 3.2330 36 1 4.9146 -0.7489 4.5358 37 1 2.8017 -1.3045 3.4001 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355009333.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:34:00 Heat of formation + Delta-G solvation = -19.315380 kcal Electronic energy + Delta-G solvation = -19020.147667 eV Core-core repulsion = 16147.685419 eV Total energy + Delta-G solvation = -2872.462249 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.10748 -39.33892 -38.28646 -34.86782 -34.12420 -32.02457 -31.80854 -29.45789 -28.73059 -26.63339 -24.75760 -23.34549 -21.98941 -21.21917 -20.27733 -19.03386 -17.85252 -17.37935 -16.44064 -16.26229 -16.04814 -15.76130 -15.53472 -15.04028 -14.55646 -14.31473 -14.26351 -13.83833 -13.80039 -13.36471 -13.20274 -13.07775 -12.76784 -12.65474 -12.60658 -12.15262 -12.06833 -11.87384 -11.79186 -11.29377 -10.91932 -10.83391 -9.85611 -9.81999 -9.46475 -9.31928 -8.28201 -6.84986 0.40556 0.50239 1.38757 1.42721 1.54192 2.23850 2.48509 2.57507 3.01315 3.35580 3.56540 3.63195 3.86156 3.91928 4.01379 4.09510 4.13085 4.23803 4.31381 4.58732 4.69994 4.74433 4.85124 4.91993 4.99217 5.02652 5.09703 5.13325 5.16200 5.23729 5.31318 5.40456 5.57720 5.63377 5.73000 5.88736 6.12916 6.25598 6.30301 6.86975 7.59262 8.51508 8.68979 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.021290 B = 0.005757 C = 0.004936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.831807 B = 4862.069885 C = 5671.771667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.131 4.131 3 C 0.162 3.838 4 N -0.746 5.746 5 C 0.538 3.462 6 O -0.634 6.634 7 C -0.574 4.574 8 H 0.087 0.913 9 C 0.028 3.972 10 N -0.824 5.824 11 Si 0.997 3.003 12 H -0.254 1.254 13 H -0.275 1.275 14 H -0.254 1.254 15 C -0.156 4.156 16 C -0.094 4.094 17 H 0.146 0.854 18 C -0.065 4.065 19 C -0.128 4.128 20 C -0.141 4.141 21 C -0.133 4.133 22 C -0.124 4.124 23 C -0.119 4.119 24 H 0.086 0.914 25 H 0.051 0.949 26 H 0.063 0.937 27 H 0.021 0.979 28 H 0.043 0.957 29 H 0.393 0.607 30 H 0.273 0.727 31 H 0.128 0.872 32 H 0.081 0.919 33 H 0.104 0.896 34 H 0.114 0.886 35 H 0.139 0.861 36 H 0.151 0.849 37 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.926 -15.657 5.351 17.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.131 4.131 3 C 0.038 3.962 4 N -0.400 5.400 5 C 0.342 3.658 6 O -0.522 6.522 7 C -0.611 4.611 8 H 0.105 0.895 9 C -0.186 4.186 10 N -0.453 5.453 11 Si 0.817 3.183 12 H -0.177 1.177 13 H -0.199 1.199 14 H -0.178 1.178 15 C -0.193 4.193 16 C -0.113 4.113 17 H 0.163 0.837 18 C -0.065 4.065 19 C -0.146 4.146 20 C -0.159 4.159 21 C -0.151 4.151 22 C -0.141 4.141 23 C -0.137 4.137 24 H 0.105 0.895 25 H 0.071 0.929 26 H 0.082 0.918 27 H 0.040 0.960 28 H 0.061 0.939 29 H 0.227 0.773 30 H 0.083 0.917 31 H 0.147 0.853 32 H 0.100 0.900 33 H 0.122 0.878 34 H 0.132 0.868 35 H 0.157 0.843 36 H 0.169 0.831 37 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -3.559 -15.026 6.114 16.609 hybrid contribution 0.398 0.658 -0.977 1.243 sum -3.162 -14.369 5.137 15.584 Atomic orbital electron populations 1.21318 0.89576 1.02984 1.02307 1.21753 0.96037 0.88965 1.06348 1.20536 0.98049 0.92755 0.84880 1.45748 1.61988 1.25664 1.06619 1.18611 0.77211 0.79531 0.90497 1.90554 1.56724 1.56948 1.47963 1.21401 1.39227 1.08892 0.91568 0.89532 1.26982 0.92538 0.95342 1.03769 1.70202 1.28013 1.11781 1.35318 0.85083 0.79551 0.77955 0.75754 1.17749 1.19942 1.17809 1.23233 1.02278 1.00361 0.93387 1.21444 0.95277 1.00646 0.93891 0.83663 1.19363 0.93839 0.98927 0.94347 1.21146 0.93940 0.99606 0.99905 1.21328 0.98001 1.00440 0.96169 1.21414 1.00305 0.99860 0.93498 1.21478 0.92800 0.98757 1.01104 1.21286 0.98798 1.00354 0.93253 0.89488 0.92941 0.91836 0.96019 0.93919 0.77321 0.91670 0.85345 0.90017 0.87806 0.86837 0.84323 0.83088 0.83317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.38 9.79 71.98 0.70 -1.67 16 2 C -0.13 -3.72 2.24 -52.15 -0.12 -3.84 16 3 C 0.16 6.75 5.31 86.38 0.46 7.21 16 4 N -0.75 -34.89 5.40 -467.42 -2.52 -37.41 16 5 C 0.54 32.29 7.75 86.36 0.67 32.96 16 6 O -0.63 -44.27 15.02 -4.32 -0.06 -44.34 16 7 C -0.57 -33.36 9.54 24.83 0.24 -33.13 16 8 H 0.09 4.49 7.85 -2.91 -0.02 4.47 16 9 C 0.03 1.63 5.50 85.31 0.47 2.10 16 10 N -0.82 -51.82 11.83 21.84 0.26 -51.56 16 11 Si 1.00 41.75 29.56 68.60 2.03 43.78 16 12 H -0.25 -9.94 7.11 99.48 0.71 -9.24 16 13 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 14 H -0.25 -9.98 7.11 99.48 0.71 -9.27 16 15 C -0.16 -3.87 8.82 30.59 0.27 -3.60 16 16 C -0.09 -2.30 5.69 -11.52 -0.07 -2.37 16 17 H 0.15 2.56 8.09 -2.39 -0.02 2.54 16 18 C -0.06 -1.89 4.76 -19.87 -0.09 -1.99 16 19 C -0.13 -4.43 7.17 22.27 0.16 -4.27 16 20 C -0.14 -4.73 10.05 22.27 0.22 -4.50 16 21 C -0.13 -3.68 10.05 22.27 0.22 -3.45 16 22 C -0.12 -2.99 10.05 22.27 0.22 -2.76 16 23 C -0.12 -2.96 9.74 22.27 0.22 -2.74 16 24 H 0.09 1.41 7.95 -2.39 -0.02 1.39 16 25 H 0.05 1.28 7.98 -2.39 -0.02 1.26 16 26 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.02 0.99 7.92 -2.39 -0.02 0.97 16 28 H 0.04 1.99 4.85 -2.39 -0.01 1.98 16 29 H 0.39 15.95 8.18 -92.71 -0.76 15.20 16 30 H 0.27 15.62 8.29 -92.71 -0.77 14.85 16 31 H 0.13 2.37 8.14 -2.39 -0.02 2.35 16 32 H 0.08 2.41 6.17 -2.38 -0.01 2.40 16 33 H 0.10 3.93 5.95 -2.91 -0.02 3.91 16 34 H 0.11 3.76 8.06 -2.91 -0.02 3.73 16 35 H 0.14 3.11 8.06 -2.91 -0.02 3.09 16 36 H 0.15 2.59 8.06 -2.91 -0.02 2.57 16 37 H 0.15 2.72 8.06 -2.91 -0.02 2.70 16 Total: -1.00 -79.30 311.30 3.60 -75.70 By element: Atomic # 1 Polarization: 35.56 SS G_CDS: 0.32 Total: 35.88 kcal Atomic # 6 Polarization: -25.63 SS G_CDS: 3.58 Total: -22.05 kcal Atomic # 7 Polarization: -86.71 SS G_CDS: -2.26 Total: -88.98 kcal Atomic # 8 Polarization: -44.27 SS G_CDS: -0.06 Total: -44.34 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 2.03 Total: 43.78 kcal Total: -79.30 3.60 -75.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355009333.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.386 kcal (2) G-P(sol) polarization free energy of solvation -79.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds