Wall clock time and date at job start Mon Mar 30 2020 00:34:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 115.55037 * 2 1 4 4 N 1.46500 * 109.46937 * 294.51448 * 3 2 1 5 5 C 1.34779 * 119.99902 * 183.73029 * 4 3 2 6 6 O 1.21693 * 119.99905 * 359.97438 * 5 4 3 7 7 C 1.46368 * 120.00015 * 180.02562 * 5 4 3 8 8 H 1.07998 * 120.00222 * 359.97438 * 7 5 4 9 9 C 1.40048 * 119.99999 * 179.97438 * 7 5 4 10 10 N 1.30673 * 120.00293 * 0.02562 * 9 7 5 11 11 Si 1.86801 * 120.00275 * 179.97438 * 9 7 5 12 12 H 1.48506 * 109.47104 * 0.02562 * 11 9 7 13 13 H 1.48502 * 109.47385 * 119.99500 * 11 9 7 14 14 H 1.48499 * 109.47288 * 240.00080 * 11 9 7 15 15 C 1.52999 * 117.49798 * 145.70729 * 2 1 3 16 16 C 1.52995 * 117.49872 * 214.32879 * 2 1 3 17 17 H 1.09001 * 117.50157 * 359.97438 * 16 2 1 18 18 C 1.50697 * 117.50212 * 144.99709 * 16 2 1 19 19 C 1.38241 * 119.99836 * 59.72537 * 18 16 2 20 20 C 1.38226 * 120.00024 * 179.79271 * 19 18 16 21 21 C 1.38240 * 120.00021 * 0.46456 * 20 19 18 22 22 C 1.38230 * 119.99807 * 359.76596 * 21 20 19 23 23 C 1.38230 * 120.00411 * 240.00294 * 18 16 2 24 24 H 1.08998 * 109.47225 * 200.21393 * 1 2 3 25 25 H 1.09003 * 109.47371 * 80.21175 * 1 2 3 26 26 H 1.09001 * 109.47414 * 320.21007 * 1 2 3 27 27 H 1.09001 * 109.46890 * 54.51541 * 3 2 1 28 28 H 1.08993 * 109.46964 * 174.50854 * 3 2 1 29 29 H 0.97001 * 120.00235 * 3.72963 * 4 3 2 30 30 H 0.96994 * 120.00309 * 180.02562 * 10 9 7 31 31 H 1.08998 * 117.49989 * 214.98424 * 15 2 1 32 32 H 1.09005 * 117.49937 * 0.02562 * 15 2 1 33 33 H 1.08004 * 119.99977 * 0.02562 * 19 18 16 34 34 H 1.08002 * 120.00397 * 180.24931 * 20 19 18 35 35 H 1.08003 * 119.99880 * 179.79669 * 21 20 19 36 36 H 1.08002 * 120.00191 * 180.02562 * 22 21 20 37 37 H 1.08006 * 120.00060 * 359.97438 * 23 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 7 1.8834 2.0681 -1.2567 5 6 2.4238 3.2759 -1.5131 6 8 3.1658 3.7954 -0.7004 7 6 2.1172 3.9633 -2.7684 8 1 1.4583 3.5025 -3.4895 9 6 2.6782 5.2186 -3.0346 10 7 3.4758 5.7760 -2.1624 11 14 2.2875 6.0956 -4.6370 12 1 1.3667 5.2587 -5.4476 13 1 1.6406 7.3995 -4.3427 14 1 3.5439 6.3260 -5.3943 15 6 2.2364 -1.1212 0.7646 16 6 2.2364 -1.1207 -0.7653 17 1 1.6112 -1.8583 -1.2685 18 6 3.5289 -0.7806 -1.4615 19 6 4.6031 -0.3067 -0.7318 20 6 5.7901 0.0013 -1.3697 21 6 5.8999 -0.1556 -2.7388 22 6 4.8242 -0.6249 -3.4691 23 6 3.6386 -0.9370 -2.8305 24 1 -0.3633 -0.9643 0.3551 25 1 -0.3634 0.1747 -1.0127 26 1 -0.3634 0.7896 0.6577 27 1 1.8084 1.9654 0.8368 28 1 3.2694 1.2670 0.0983 29 1 1.2917 1.6542 -1.9043 30 1 3.8641 6.6456 -2.3466 31 1 3.1714 -0.8756 1.2681 32 1 1.6111 -1.8592 1.2674 33 1 4.5162 -0.1806 0.3374 34 1 6.6306 0.3677 -0.7991 35 1 6.8263 0.0882 -3.2376 36 1 4.9101 -0.7479 -4.5387 37 1 2.7980 -1.3034 -3.4013 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355009337.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:34:06 Heat of formation + Delta-G solvation = 3.768175 kcal Electronic energy + Delta-G solvation = -19332.508187 eV Core-core repulsion = 16461.046916 eV Total energy + Delta-G solvation = -2871.461271 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.82279 -37.63188 -36.56943 -32.81672 -32.00592 -30.77641 -30.58156 -27.96493 -26.96218 -24.87565 -23.54005 -22.10134 -20.39670 -19.64572 -18.79885 -17.18371 -16.44702 -15.27461 -15.22827 -14.88201 -14.34442 -14.08388 -13.96582 -13.56004 -13.10843 -13.01249 -12.74320 -12.42790 -12.30500 -12.17073 -11.64043 -11.39888 -11.17149 -10.99742 -10.92633 -10.64750 -10.45157 -10.35087 -10.16328 -10.06547 -9.72246 -8.79025 -8.51279 -8.12619 -7.50115 -7.31914 -6.10770 -4.54695 1.69299 1.78953 3.16294 3.24231 3.28696 3.76986 4.16037 4.28394 4.66439 4.68082 4.94305 4.96625 5.15714 5.27207 5.31763 5.35651 5.42296 5.46021 5.75150 5.81914 5.83071 5.91927 5.95786 5.99532 6.19605 6.20821 6.30791 6.36465 6.38524 6.59218 6.69709 6.82681 6.87916 6.96381 7.36831 7.50619 8.04860 8.23163 8.43664 9.10777 9.67244 10.69194 10.89810 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.017864 B = 0.007110 C = 0.005962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.985587 B = 3937.017010 C = 4695.378988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.121 4.121 3 C 0.164 3.836 4 N -0.757 5.757 5 C 0.558 3.442 6 O -0.583 6.583 7 C -0.543 4.543 8 H 0.065 0.935 9 C 0.088 3.912 10 N -0.769 5.769 11 Si 0.904 3.096 12 H -0.264 1.264 13 H -0.277 1.277 14 H -0.277 1.277 15 C -0.166 4.166 16 C -0.107 4.107 17 H 0.109 0.891 18 C -0.040 4.040 19 C -0.111 4.111 20 C -0.113 4.113 21 C -0.124 4.124 22 C -0.117 4.117 23 C -0.111 4.111 24 H 0.052 0.948 25 H 0.061 0.939 26 H 0.063 0.937 27 H 0.046 0.954 28 H 0.059 0.941 29 H 0.378 0.622 30 H 0.266 0.734 31 H 0.097 0.903 32 H 0.096 0.904 33 H 0.119 0.881 34 H 0.117 0.883 35 H 0.116 0.884 36 H 0.117 0.883 37 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.281 -14.523 0.584 14.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.121 4.121 3 C 0.039 3.961 4 N -0.412 5.412 5 C 0.362 3.638 6 O -0.466 6.466 7 C -0.581 4.581 8 H 0.083 0.917 9 C -0.131 4.131 10 N -0.398 5.398 11 Si 0.728 3.272 12 H -0.188 1.188 13 H -0.202 1.202 14 H -0.202 1.202 15 C -0.203 4.203 16 C -0.125 4.125 17 H 0.127 0.873 18 C -0.040 4.040 19 C -0.129 4.129 20 C -0.131 4.131 21 C -0.142 4.142 22 C -0.135 4.135 23 C -0.129 4.129 24 H 0.072 0.928 25 H 0.080 0.920 26 H 0.082 0.918 27 H 0.064 0.936 28 H 0.077 0.923 29 H 0.209 0.791 30 H 0.076 0.924 31 H 0.116 0.884 32 H 0.115 0.885 33 H 0.137 0.863 34 H 0.135 0.865 35 H 0.134 0.866 36 H 0.135 0.865 37 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -0.609 -13.969 1.253 14.038 hybrid contribution -0.467 0.353 -1.155 1.295 sum -1.076 -13.616 0.098 13.659 Atomic orbital electron populations 1.21288 0.91813 1.01412 1.02282 1.21924 0.94901 0.91741 1.03567 1.20486 0.98605 0.87783 0.89216 1.45950 1.54217 1.21842 1.19199 1.18147 0.79566 0.78445 0.87657 1.90588 1.39881 1.66271 1.49878 1.20894 1.30930 1.03335 1.02900 0.91664 1.25683 0.93362 0.97026 0.97032 1.70037 1.22821 1.13991 1.32986 0.86387 0.78782 0.79513 0.82478 1.18841 1.20233 1.20241 1.23234 1.02646 1.00934 0.93469 1.21150 0.96443 1.01699 0.93251 0.87332 1.18953 0.93207 0.98495 0.93381 1.20961 0.92962 0.99148 0.99802 1.21049 0.97735 0.99442 0.94876 1.21050 0.98837 1.00049 0.94274 1.21015 0.93445 0.99640 0.99407 1.20808 0.97429 1.01002 0.93688 0.92849 0.92017 0.91803 0.93584 0.92269 0.79090 0.92357 0.88425 0.88517 0.86324 0.86478 0.86601 0.86501 0.86581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.41 9.61 37.16 0.36 -1.05 16 2 C -0.12 -1.77 2.15 -154.51 -0.33 -2.11 16 3 C 0.16 3.26 4.89 -4.04 -0.02 3.24 16 4 N -0.76 -17.38 5.48 -61.72 -0.34 -17.72 16 5 C 0.56 16.25 7.75 -12.99 -0.10 16.15 16 6 O -0.58 -19.32 15.02 5.20 0.08 -19.24 16 7 C -0.54 -15.75 9.54 -35.63 -0.34 -16.09 16 8 H 0.07 1.75 7.85 -52.49 -0.41 1.34 16 9 C 0.09 2.52 5.50 -17.37 -0.10 2.43 16 10 N -0.77 -23.60 11.83 55.55 0.66 -22.94 16 11 Si 0.90 20.66 29.56 -169.99 -5.02 15.63 16 12 H -0.26 -5.83 7.11 56.52 0.40 -5.43 16 13 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 14 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 15 C -0.17 -2.04 9.21 -26.73 -0.25 -2.29 16 16 C -0.11 -1.46 5.76 -91.78 -0.53 -1.99 16 17 H 0.11 1.29 8.14 -51.93 -0.42 0.87 16 18 C -0.04 -0.63 5.05 -104.63 -0.53 -1.16 16 19 C -0.11 -1.82 7.35 -39.58 -0.29 -2.11 16 20 C -0.11 -1.85 10.05 -39.59 -0.40 -2.25 16 21 C -0.12 -1.95 10.05 -39.58 -0.40 -2.35 16 22 C -0.12 -1.78 10.05 -39.59 -0.40 -2.18 16 23 C -0.11 -1.70 9.74 -39.59 -0.39 -2.09 16 24 H 0.05 0.56 7.95 -51.93 -0.41 0.14 16 25 H 0.06 0.78 8.11 -51.93 -0.42 0.36 16 26 H 0.06 0.84 8.13 -51.93 -0.42 0.42 16 27 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.06 1.26 4.93 -51.93 -0.26 1.01 16 29 H 0.38 7.88 8.32 -40.82 -0.34 7.54 16 30 H 0.27 7.39 8.29 -40.82 -0.34 7.05 16 31 H 0.10 1.21 6.19 -51.93 -0.32 0.89 16 32 H 0.10 0.98 8.08 -51.93 -0.42 0.56 16 33 H 0.12 1.83 5.31 -52.48 -0.28 1.55 16 34 H 0.12 1.72 8.06 -52.49 -0.42 1.29 16 35 H 0.12 1.56 8.06 -52.48 -0.42 1.14 16 36 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 37 H 0.12 1.53 8.06 -52.48 -0.42 1.11 16 LS Contribution 311.57 15.07 4.70 4.70 Total: -1.00 -34.95 311.57 -8.59 -43.54 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: -4.95 Total: 9.89 kcal Atomic # 6 Polarization: -10.15 SS G_CDS: -3.70 Total: -13.85 kcal Atomic # 7 Polarization: -40.98 SS G_CDS: 0.32 Total: -40.66 kcal Atomic # 8 Polarization: -19.32 SS G_CDS: 0.08 Total: -19.24 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -34.95 -8.59 -43.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355009337.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.305 kcal (2) G-P(sol) polarization free energy of solvation -34.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.537 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds