Wall clock time and date at job start Mon Mar 30 2020 00:34:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 115.55037 * 2 1 4 4 N 1.46500 * 109.46937 * 294.51448 * 3 2 1 5 5 C 1.34779 * 119.99902 * 183.73029 * 4 3 2 6 6 O 1.21693 * 119.99905 * 359.97438 * 5 4 3 7 7 C 1.46368 * 120.00015 * 180.02562 * 5 4 3 8 8 H 1.07998 * 120.00222 * 359.97438 * 7 5 4 9 9 C 1.40048 * 119.99999 * 179.97438 * 7 5 4 10 10 N 1.30673 * 120.00293 * 0.02562 * 9 7 5 11 11 Si 1.86801 * 120.00275 * 179.97438 * 9 7 5 12 12 H 1.48506 * 109.47104 * 0.02562 * 11 9 7 13 13 H 1.48502 * 109.47385 * 119.99500 * 11 9 7 14 14 H 1.48499 * 109.47288 * 240.00080 * 11 9 7 15 15 C 1.52999 * 117.49798 * 145.70729 * 2 1 3 16 16 C 1.52995 * 117.49872 * 214.32879 * 2 1 3 17 17 H 1.09001 * 117.50157 * 359.97438 * 16 2 1 18 18 C 1.50697 * 117.50212 * 144.99709 * 16 2 1 19 19 C 1.38241 * 119.99836 * 59.72537 * 18 16 2 20 20 C 1.38226 * 120.00024 * 179.79271 * 19 18 16 21 21 C 1.38240 * 120.00021 * 0.46456 * 20 19 18 22 22 C 1.38230 * 119.99807 * 359.76596 * 21 20 19 23 23 C 1.38230 * 120.00411 * 240.00294 * 18 16 2 24 24 H 1.08998 * 109.47225 * 200.21393 * 1 2 3 25 25 H 1.09003 * 109.47371 * 80.21175 * 1 2 3 26 26 H 1.09001 * 109.47414 * 320.21007 * 1 2 3 27 27 H 1.09001 * 109.46890 * 54.51541 * 3 2 1 28 28 H 1.08993 * 109.46964 * 174.50854 * 3 2 1 29 29 H 0.97001 * 120.00235 * 3.72963 * 4 3 2 30 30 H 0.96994 * 120.00309 * 180.02562 * 10 9 7 31 31 H 1.08998 * 117.49989 * 214.98424 * 15 2 1 32 32 H 1.09005 * 117.49937 * 0.02562 * 15 2 1 33 33 H 1.08004 * 119.99977 * 0.02562 * 19 18 16 34 34 H 1.08002 * 120.00397 * 180.24931 * 20 19 18 35 35 H 1.08003 * 119.99880 * 179.79669 * 21 20 19 36 36 H 1.08002 * 120.00191 * 180.02562 * 22 21 20 37 37 H 1.08006 * 120.00060 * 359.97438 * 23 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 7 1.8834 2.0681 -1.2567 5 6 2.4238 3.2759 -1.5131 6 8 3.1658 3.7954 -0.7004 7 6 2.1172 3.9633 -2.7684 8 1 1.4583 3.5025 -3.4895 9 6 2.6782 5.2186 -3.0346 10 7 3.4758 5.7760 -2.1624 11 14 2.2875 6.0956 -4.6370 12 1 1.3667 5.2587 -5.4476 13 1 1.6406 7.3995 -4.3427 14 1 3.5439 6.3260 -5.3943 15 6 2.2364 -1.1212 0.7646 16 6 2.2364 -1.1207 -0.7653 17 1 1.6112 -1.8583 -1.2685 18 6 3.5289 -0.7806 -1.4615 19 6 4.6031 -0.3067 -0.7318 20 6 5.7901 0.0013 -1.3697 21 6 5.8999 -0.1556 -2.7388 22 6 4.8242 -0.6249 -3.4691 23 6 3.6386 -0.9370 -2.8305 24 1 -0.3633 -0.9643 0.3551 25 1 -0.3634 0.1747 -1.0127 26 1 -0.3634 0.7896 0.6577 27 1 1.8084 1.9654 0.8368 28 1 3.2694 1.2670 0.0983 29 1 1.2917 1.6542 -1.9043 30 1 3.8641 6.6456 -2.3466 31 1 3.1714 -0.8756 1.2681 32 1 1.6111 -1.8592 1.2674 33 1 4.5162 -0.1806 0.3374 34 1 6.6306 0.3677 -0.7991 35 1 6.8263 0.0882 -3.2376 36 1 4.9101 -0.7479 -4.5387 37 1 2.7980 -1.3034 -3.4013 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355009337.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:34:05 Heat of formation + Delta-G solvation = -18.672113 kcal Electronic energy + Delta-G solvation = -19333.481271 eV Core-core repulsion = 16461.046916 eV Total energy + Delta-G solvation = -2872.434355 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.04234 -39.26440 -38.27273 -34.85666 -34.10955 -32.00318 -31.77365 -29.33716 -28.68033 -26.69869 -24.69739 -23.30168 -21.73458 -21.50438 -20.20518 -19.01019 -17.82335 -17.38848 -16.39984 -16.25954 -15.94287 -15.80434 -15.46552 -14.99360 -14.51189 -14.24765 -14.19305 -14.01344 -13.69421 -13.38833 -13.15450 -13.06405 -12.74540 -12.65227 -12.60439 -12.22289 -11.98496 -11.81846 -11.69767 -11.24544 -10.93501 -10.86832 -9.80368 -9.76468 -9.33699 -9.31217 -8.26748 -6.81835 0.48145 0.56263 1.38404 1.38886 1.56355 2.24272 2.50759 2.61623 3.02936 3.37261 3.65148 3.68298 3.82947 3.96485 4.04809 4.10699 4.15192 4.26726 4.33884 4.62179 4.71139 4.75856 4.82404 4.94641 5.01016 5.04494 5.12357 5.13752 5.20636 5.24856 5.33237 5.41966 5.62284 5.66351 5.76127 5.91750 6.18656 6.27971 6.35320 6.89358 7.62517 8.54367 8.71870 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.017864 B = 0.007110 C = 0.005962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.985587 B = 3937.017010 C = 4695.378988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.132 4.132 3 C 0.165 3.835 4 N -0.741 5.741 5 C 0.542 3.458 6 O -0.636 6.636 7 C -0.571 4.571 8 H 0.083 0.917 9 C 0.028 3.972 10 N -0.823 5.823 11 Si 0.994 3.006 12 H -0.247 1.247 13 H -0.268 1.268 14 H -0.269 1.269 15 C -0.146 4.146 16 C -0.102 4.102 17 H 0.137 0.863 18 C -0.052 4.052 19 C -0.131 4.131 20 C -0.138 4.138 21 C -0.140 4.140 22 C -0.127 4.127 23 C -0.122 4.122 24 H 0.086 0.914 25 H 0.060 0.940 26 H 0.051 0.949 27 H 0.024 0.976 28 H 0.040 0.960 29 H 0.391 0.609 30 H 0.272 0.728 31 H 0.090 0.910 32 H 0.131 0.869 33 H 0.119 0.881 34 H 0.122 0.878 35 H 0.132 0.868 36 H 0.141 0.859 37 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.027 -16.056 -1.160 16.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.133 4.133 3 C 0.041 3.959 4 N -0.394 5.394 5 C 0.346 3.654 6 O -0.523 6.523 7 C -0.608 4.608 8 H 0.101 0.899 9 C -0.186 4.186 10 N -0.453 5.453 11 Si 0.814 3.186 12 H -0.170 1.170 13 H -0.193 1.193 14 H -0.194 1.194 15 C -0.183 4.183 16 C -0.120 4.120 17 H 0.155 0.845 18 C -0.052 4.052 19 C -0.149 4.149 20 C -0.156 4.156 21 C -0.158 4.158 22 C -0.144 4.144 23 C -0.139 4.139 24 H 0.105 0.895 25 H 0.079 0.921 26 H 0.070 0.930 27 H 0.042 0.958 28 H 0.059 0.941 29 H 0.224 0.776 30 H 0.082 0.918 31 H 0.109 0.891 32 H 0.149 0.851 33 H 0.136 0.864 34 H 0.140 0.860 35 H 0.150 0.850 36 H 0.159 0.841 37 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -2.389 -15.563 -0.489 15.752 hybrid contribution 0.121 0.797 -0.550 0.976 sum -2.268 -14.765 -1.038 14.974 Atomic orbital electron populations 1.21278 0.89898 1.02886 1.02209 1.21731 0.96027 0.89086 1.06417 1.20502 0.98050 0.90493 0.86859 1.45585 1.53068 1.20339 1.20384 1.18529 0.79331 0.79933 0.87619 1.90542 1.42264 1.68109 1.51413 1.21406 1.31645 1.04333 1.03377 0.89884 1.26945 0.92466 0.97677 1.01535 1.70207 1.24214 1.14833 1.36007 0.85030 0.79034 0.78069 0.76516 1.16958 1.19284 1.19420 1.23368 1.02340 0.99616 0.92973 1.21283 0.95412 1.01139 0.94187 0.84506 1.19270 0.93876 0.98173 0.93909 1.21154 0.93634 0.99919 1.00159 1.21326 0.98308 1.00215 0.95746 1.21366 1.00032 1.00237 0.94188 1.21402 0.93289 0.99018 1.00738 1.21191 0.98240 1.00689 0.93812 0.89545 0.92071 0.92984 0.95786 0.94143 0.77635 0.91778 0.89119 0.85070 0.86366 0.86043 0.85017 0.84138 0.84198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.41 9.61 71.98 0.69 -1.72 16 2 C -0.13 -3.66 2.15 -52.18 -0.11 -3.77 16 3 C 0.17 6.71 4.89 86.38 0.42 7.14 16 4 N -0.74 -34.47 5.48 -467.41 -2.56 -37.03 16 5 C 0.54 32.47 7.75 86.36 0.67 33.14 16 6 O -0.64 -44.10 15.02 -4.33 -0.06 -44.17 16 7 C -0.57 -33.32 9.54 24.83 0.24 -33.08 16 8 H 0.08 4.38 7.85 -2.91 -0.02 4.36 16 9 C 0.03 1.63 5.50 85.30 0.47 2.10 16 10 N -0.82 -51.79 11.83 21.84 0.26 -51.53 16 11 Si 0.99 42.07 29.56 68.60 2.03 44.10 16 12 H -0.25 -9.62 7.11 99.48 0.71 -8.92 16 13 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 14 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 15 C -0.15 -3.22 9.21 30.59 0.28 -2.94 16 16 C -0.10 -2.52 5.76 -11.54 -0.07 -2.58 16 17 H 0.14 2.63 8.14 -2.39 -0.02 2.61 16 18 C -0.05 -1.59 5.05 -19.87 -0.10 -1.69 16 19 C -0.13 -4.39 7.35 22.27 0.16 -4.23 16 20 C -0.14 -4.68 10.05 22.27 0.22 -4.45 16 21 C -0.14 -4.43 10.05 22.27 0.22 -4.20 16 22 C -0.13 -3.72 10.05 22.27 0.22 -3.50 16 23 C -0.12 -3.52 9.74 22.27 0.22 -3.31 16 24 H 0.09 1.42 7.95 -2.39 -0.02 1.40 16 25 H 0.06 1.38 8.11 -2.39 -0.02 1.37 16 26 H 0.05 1.30 8.13 -2.39 -0.02 1.28 16 27 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.04 1.80 4.93 -2.39 -0.01 1.79 16 29 H 0.39 16.08 8.32 -92.71 -0.77 15.31 16 30 H 0.27 15.50 8.29 -92.71 -0.77 14.74 16 31 H 0.09 2.16 6.19 -2.39 -0.01 2.14 16 32 H 0.13 2.05 8.08 -2.38 -0.02 2.04 16 33 H 0.12 3.81 5.31 -2.91 -0.02 3.80 16 34 H 0.12 3.79 8.06 -2.91 -0.02 3.77 16 35 H 0.13 3.55 8.06 -2.91 -0.02 3.53 16 36 H 0.14 3.33 8.06 -2.91 -0.02 3.31 16 37 H 0.14 3.28 8.06 -2.91 -0.02 3.26 16 Total: -1.00 -78.87 311.57 3.51 -75.36 By element: Atomic # 1 Polarization: 36.06 SS G_CDS: 0.31 Total: 36.37 kcal Atomic # 6 Polarization: -26.64 SS G_CDS: 3.54 Total: -23.10 kcal Atomic # 7 Polarization: -86.26 SS G_CDS: -2.30 Total: -88.56 kcal Atomic # 8 Polarization: -44.10 SS G_CDS: -0.06 Total: -44.17 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.10 kcal Total: -78.87 3.51 -75.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355009337.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.687 kcal (2) G-P(sol) polarization free energy of solvation -78.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds