Wall clock time and date at job start Mon Mar 30 2020 00:34:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 115.55447 * 2 1 4 4 N 1.46503 * 109.47564 * 80.36158 * 3 2 1 5 5 C 1.34777 * 120.00262 * 184.21297 * 4 3 2 6 6 O 1.21686 * 119.99743 * 359.97438 * 5 4 3 7 7 C 1.46374 * 119.99930 * 180.02562 * 5 4 3 8 8 H 1.08000 * 119.99869 * 352.78389 * 7 5 4 9 9 C 1.40043 * 119.99921 * 172.78802 * 7 5 4 10 10 N 1.30671 * 120.00174 * 7.37851 * 9 7 5 11 11 Si 1.86794 * 120.00069 * 187.37879 * 9 7 5 12 12 H 1.48498 * 109.47275 * 94.95431 * 11 9 7 13 13 H 1.48501 * 109.47310 * 214.95633 * 11 9 7 14 14 H 1.48502 * 109.46936 * 334.95620 * 11 9 7 15 15 C 1.53005 * 117.52115 * 214.29133 * 2 1 3 16 16 C 1.52998 * 60.00325 * 252.52049 * 15 2 1 17 17 H 1.08997 * 117.51917 * 252.51623 * 16 15 2 18 18 C 1.50705 * 117.49779 * 107.48607 * 16 15 2 19 19 C 1.38230 * 119.99639 * 171.37538 * 18 16 15 20 20 C 1.38234 * 119.99646 * 179.97438 * 19 18 16 21 21 C 1.38241 * 120.00159 * 0.27971 * 20 19 18 22 22 C 1.38237 * 119.99760 * 359.53667 * 21 20 19 23 23 C 1.38230 * 119.99737 * 0.39127 * 22 21 20 24 24 H 1.08996 * 109.47435 * 268.13705 * 1 2 3 25 25 H 1.08999 * 109.46959 * 28.13856 * 1 2 3 26 26 H 1.08999 * 109.46803 * 148.13287 * 1 2 3 27 27 H 1.08997 * 109.47502 * 200.36504 * 3 2 1 28 28 H 1.09008 * 109.46769 * 320.36422 * 3 2 1 29 29 H 0.97002 * 119.99386 * 4.20825 * 4 3 2 30 30 H 0.97001 * 119.99925 * 179.97438 * 10 9 7 31 31 H 1.08999 * 117.49770 * 145.02817 * 15 2 1 32 32 H 1.08997 * 117.49723 * 0.02562 * 15 2 1 33 33 H 1.07998 * 120.00796 * 359.97438 * 19 18 16 34 34 H 1.07998 * 120.00107 * 180.02562 * 20 19 18 35 35 H 1.08002 * 119.99835 * 179.72292 * 21 20 19 36 36 H 1.07998 * 120.00115 * 180.23272 * 22 21 20 37 37 H 1.08003 * 120.00105 * 179.83600 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3803 0.0000 4 7 2.1920 1.9207 1.3617 5 6 2.6487 3.1678 1.5911 6 8 3.0598 3.8448 0.6673 7 6 2.6513 3.7075 2.9518 8 1 2.1819 3.1554 3.7526 9 6 3.2622 4.9398 3.2151 10 7 3.7021 5.6751 2.2285 11 14 3.4485 5.5324 4.9767 12 1 4.7922 5.1577 5.4857 13 1 3.2964 7.0090 5.0210 14 1 2.4047 4.9017 5.8241 15 6 2.2370 -1.1211 -0.7645 16 6 2.2365 -1.1207 0.7655 17 1 3.1711 -0.8745 1.2694 18 6 1.3719 -2.1404 1.4613 19 6 1.4655 -2.3069 2.8303 20 6 0.6721 -3.2418 3.4686 21 6 -0.2106 -4.0143 2.7370 22 6 -0.3068 -3.8450 1.3684 23 6 0.4855 -2.9091 0.7304 24 1 -0.3634 -0.0334 1.0271 25 1 -0.3633 0.9062 -0.4847 26 1 -0.3633 -0.8728 -0.5426 27 1 3.2158 1.2926 -0.3576 28 1 1.6326 2.0495 -0.6556 29 1 1.8646 1.3809 2.0981 30 1 4.1250 6.5288 2.4110 31 1 3.1721 -0.8751 -1.2675 32 1 1.6121 -1.8586 -1.2680 33 1 2.1583 -1.7067 3.4013 34 1 0.7448 -3.3717 4.5382 35 1 -0.8272 -4.7478 3.2351 36 1 -0.9991 -4.4458 0.7973 37 1 0.4123 -2.7787 -0.3392 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355009339.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:34:09 Heat of formation + Delta-G solvation = 0.785630 kcal Electronic energy + Delta-G solvation = -18660.246100 eV Core-core repulsion = 15788.655496 eV Total energy + Delta-G solvation = -2871.590604 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.98103 -37.92065 -36.64098 -32.93677 -32.12897 -31.02500 -30.57464 -28.39899 -26.95871 -24.82898 -23.78216 -22.38353 -20.61053 -19.68522 -18.86012 -17.11525 -16.86749 -15.48882 -15.24362 -15.09624 -14.52888 -14.26711 -14.00660 -13.76731 -13.32965 -13.10557 -12.98010 -12.57045 -12.22600 -12.12289 -11.92857 -11.52375 -11.21815 -11.14620 -10.95878 -10.88277 -10.60835 -10.41427 -10.23028 -10.16343 -9.76413 -8.92337 -8.81873 -8.45777 -7.56654 -7.43048 -6.16732 -4.59851 1.31870 1.39262 3.15489 3.22636 3.26192 3.57832 4.03319 4.16685 4.57023 4.62334 4.79204 4.87416 4.93223 4.97037 5.08485 5.25575 5.25884 5.36912 5.48416 5.59576 5.74488 5.83675 5.92862 5.97170 6.01763 6.04716 6.17679 6.21790 6.32282 6.47202 6.50150 6.54956 6.61957 6.69552 6.99388 7.46868 7.98749 8.15596 8.38199 9.05965 9.59614 10.63332 10.82390 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.024422 B = 0.004794 C = 0.004186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.235249 B = 5839.815224 C = 6687.743264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.115 4.115 3 C 0.170 3.830 4 N -0.763 5.763 5 C 0.555 3.445 6 O -0.583 6.583 7 C -0.546 4.546 8 H 0.067 0.933 9 C 0.088 3.912 10 N -0.769 5.769 11 Si 0.906 3.094 12 H -0.273 1.273 13 H -0.279 1.279 14 H -0.265 1.265 15 C -0.163 4.163 16 C -0.114 4.114 17 H 0.116 0.884 18 C -0.037 4.037 19 C -0.113 4.113 20 C -0.118 4.118 21 C -0.131 4.131 22 C -0.121 4.121 23 C -0.121 4.121 24 H 0.059 0.941 25 H 0.062 0.938 26 H 0.054 0.946 27 H 0.046 0.954 28 H 0.056 0.944 29 H 0.380 0.620 30 H 0.267 0.733 31 H 0.099 0.901 32 H 0.096 0.904 33 H 0.124 0.876 34 H 0.120 0.880 35 H 0.117 0.883 36 H 0.118 0.882 37 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.454 -17.961 -0.435 19.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.115 4.115 3 C 0.044 3.956 4 N -0.418 5.418 5 C 0.359 3.641 6 O -0.466 6.466 7 C -0.584 4.584 8 H 0.085 0.915 9 C -0.131 4.131 10 N -0.397 5.397 11 Si 0.731 3.269 12 H -0.198 1.198 13 H -0.205 1.205 14 H -0.189 1.189 15 C -0.200 4.200 16 C -0.132 4.132 17 H 0.134 0.866 18 C -0.037 4.037 19 C -0.131 4.131 20 C -0.136 4.136 21 C -0.150 4.150 22 C -0.139 4.139 23 C -0.139 4.139 24 H 0.078 0.922 25 H 0.081 0.919 26 H 0.073 0.927 27 H 0.064 0.936 28 H 0.075 0.925 29 H 0.212 0.788 30 H 0.078 0.922 31 H 0.117 0.883 32 H 0.115 0.885 33 H 0.142 0.858 34 H 0.138 0.862 35 H 0.135 0.865 36 H 0.136 0.864 37 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -6.062 -17.266 -1.203 18.339 hybrid contribution -0.026 -0.018 1.264 1.264 sum -6.088 -17.284 0.061 18.325 Atomic orbital electron populations 1.21344 0.91859 1.01567 1.02016 1.21923 0.95142 0.91157 1.03328 1.20427 0.98179 0.89370 0.87579 1.46087 1.71430 1.17871 1.06425 1.18219 0.77024 0.78682 0.90221 1.90594 1.51326 1.58861 1.45864 1.20879 1.39226 1.05070 0.93177 0.91473 1.25690 0.93572 0.95831 0.98009 1.70033 1.28387 1.09444 1.31880 0.86392 0.79164 0.78171 0.83213 1.19834 1.20482 1.18909 1.23276 1.02761 1.00809 0.93202 1.21228 1.00354 0.98075 0.93549 0.86635 1.19157 0.95866 0.95317 0.93380 1.21060 0.99735 0.98323 0.93966 1.21128 0.96424 0.96239 0.99784 1.21096 0.99414 1.00118 0.94326 1.21078 0.99471 0.98571 0.94784 1.21079 0.96514 0.96317 0.99953 0.92164 0.91921 0.92741 0.93576 0.92541 0.78817 0.92181 0.88279 0.88543 0.85755 0.86194 0.86494 0.86423 0.86052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.49 8.53 37.16 0.32 -1.18 16 2 C -0.12 -1.68 2.13 -154.50 -0.33 -2.01 16 3 C 0.17 3.29 5.56 -4.04 -0.02 3.27 16 4 N -0.76 -17.25 5.51 -61.72 -0.34 -17.59 16 5 C 0.55 16.00 7.74 -12.99 -0.10 15.89 16 6 O -0.58 -19.17 15.06 5.20 0.08 -19.09 16 7 C -0.55 -15.63 9.53 -35.63 -0.34 -15.97 16 8 H 0.07 1.77 7.86 -52.49 -0.41 1.36 16 9 C 0.09 2.50 5.49 -17.37 -0.10 2.40 16 10 N -0.77 -23.33 11.87 55.55 0.66 -22.67 16 11 Si 0.91 20.34 29.56 -169.99 -5.03 15.31 16 12 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 13 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 14 H -0.26 -5.75 7.11 56.52 0.40 -5.35 16 15 C -0.16 -2.00 9.16 -26.73 -0.24 -2.24 16 16 C -0.11 -1.53 5.65 -91.77 -0.52 -2.05 16 17 H 0.12 1.67 8.14 -51.93 -0.42 1.24 16 18 C -0.04 -0.47 4.94 -104.62 -0.52 -0.98 16 19 C -0.11 -1.38 9.74 -39.59 -0.39 -1.77 16 20 C -0.12 -1.28 10.05 -39.58 -0.40 -1.68 16 21 C -0.13 -1.33 10.05 -39.58 -0.40 -1.73 16 22 C -0.12 -1.24 10.05 -39.58 -0.40 -1.63 16 23 C -0.12 -1.36 7.89 -39.59 -0.31 -1.67 16 24 H 0.06 0.85 7.98 -51.93 -0.41 0.44 16 25 H 0.06 0.88 7.91 -51.93 -0.41 0.47 16 26 H 0.05 0.62 6.31 -51.93 -0.33 0.29 16 27 H 0.05 0.94 7.94 -51.93 -0.41 0.53 16 28 H 0.06 1.18 7.97 -51.92 -0.41 0.77 16 29 H 0.38 7.76 8.39 -40.82 -0.34 7.42 16 30 H 0.27 7.35 8.29 -40.82 -0.34 7.01 16 31 H 0.10 1.19 8.08 -51.93 -0.42 0.77 16 32 H 0.10 1.00 6.07 -51.93 -0.32 0.69 16 33 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 34 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 35 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 36 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 37 H 0.12 1.22 5.22 -52.48 -0.27 0.94 16 LS Contribution 312.20 15.07 4.70 4.70 Total: -1.00 -34.06 312.20 -8.65 -42.72 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: -4.99 Total: 7.96 kcal Atomic # 6 Polarization: -7.60 SS G_CDS: -3.74 Total: -11.34 kcal Atomic # 7 Polarization: -40.58 SS G_CDS: 0.32 Total: -40.26 kcal Atomic # 8 Polarization: -19.17 SS G_CDS: 0.08 Total: -19.09 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.03 Total: 15.31 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -34.06 -8.65 -42.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355009339.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.503 kcal (2) G-P(sol) polarization free energy of solvation -34.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.717 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds