Wall clock time and date at job start Mon Mar 30 2020 00:34:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 115.55447 * 2 1 4 4 N 1.46503 * 109.47564 * 80.36158 * 3 2 1 5 5 C 1.34777 * 120.00262 * 184.21297 * 4 3 2 6 6 O 1.21686 * 119.99743 * 359.97438 * 5 4 3 7 7 C 1.46374 * 119.99930 * 180.02562 * 5 4 3 8 8 H 1.08000 * 119.99869 * 352.78389 * 7 5 4 9 9 C 1.40043 * 119.99921 * 172.78802 * 7 5 4 10 10 N 1.30671 * 120.00174 * 7.37851 * 9 7 5 11 11 Si 1.86794 * 120.00069 * 187.37879 * 9 7 5 12 12 H 1.48498 * 109.47275 * 94.95431 * 11 9 7 13 13 H 1.48501 * 109.47310 * 214.95633 * 11 9 7 14 14 H 1.48502 * 109.46936 * 334.95620 * 11 9 7 15 15 C 1.53005 * 117.52115 * 214.29133 * 2 1 3 16 16 C 1.52998 * 60.00325 * 252.52049 * 15 2 1 17 17 H 1.08997 * 117.51917 * 252.51623 * 16 15 2 18 18 C 1.50705 * 117.49779 * 107.48607 * 16 15 2 19 19 C 1.38230 * 119.99639 * 171.37538 * 18 16 15 20 20 C 1.38234 * 119.99646 * 179.97438 * 19 18 16 21 21 C 1.38241 * 120.00159 * 0.27971 * 20 19 18 22 22 C 1.38237 * 119.99760 * 359.53667 * 21 20 19 23 23 C 1.38230 * 119.99737 * 0.39127 * 22 21 20 24 24 H 1.08996 * 109.47435 * 268.13705 * 1 2 3 25 25 H 1.08999 * 109.46959 * 28.13856 * 1 2 3 26 26 H 1.08999 * 109.46803 * 148.13287 * 1 2 3 27 27 H 1.08997 * 109.47502 * 200.36504 * 3 2 1 28 28 H 1.09008 * 109.46769 * 320.36422 * 3 2 1 29 29 H 0.97002 * 119.99386 * 4.20825 * 4 3 2 30 30 H 0.97001 * 119.99925 * 179.97438 * 10 9 7 31 31 H 1.08999 * 117.49770 * 145.02817 * 15 2 1 32 32 H 1.08997 * 117.49723 * 0.02562 * 15 2 1 33 33 H 1.07998 * 120.00796 * 359.97438 * 19 18 16 34 34 H 1.07998 * 120.00107 * 180.02562 * 20 19 18 35 35 H 1.08002 * 119.99835 * 179.72292 * 21 20 19 36 36 H 1.07998 * 120.00115 * 180.23272 * 22 21 20 37 37 H 1.08003 * 120.00105 * 179.83600 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3803 0.0000 4 7 2.1920 1.9207 1.3617 5 6 2.6487 3.1678 1.5911 6 8 3.0598 3.8448 0.6673 7 6 2.6513 3.7075 2.9518 8 1 2.1819 3.1554 3.7526 9 6 3.2622 4.9398 3.2151 10 7 3.7021 5.6751 2.2285 11 14 3.4485 5.5324 4.9767 12 1 4.7922 5.1577 5.4857 13 1 3.2964 7.0090 5.0210 14 1 2.4047 4.9017 5.8241 15 6 2.2370 -1.1211 -0.7645 16 6 2.2365 -1.1207 0.7655 17 1 3.1711 -0.8745 1.2694 18 6 1.3719 -2.1404 1.4613 19 6 1.4655 -2.3069 2.8303 20 6 0.6721 -3.2418 3.4686 21 6 -0.2106 -4.0143 2.7370 22 6 -0.3068 -3.8450 1.3684 23 6 0.4855 -2.9091 0.7304 24 1 -0.3634 -0.0334 1.0271 25 1 -0.3633 0.9062 -0.4847 26 1 -0.3633 -0.8728 -0.5426 27 1 3.2158 1.2926 -0.3576 28 1 1.6326 2.0495 -0.6556 29 1 1.8646 1.3809 2.0981 30 1 4.1250 6.5288 2.4110 31 1 3.1721 -0.8751 -1.2675 32 1 1.6121 -1.8586 -1.2680 33 1 2.1583 -1.7067 3.4013 34 1 0.7448 -3.3717 4.5382 35 1 -0.8272 -4.7478 3.2351 36 1 -0.9991 -4.4458 0.7973 37 1 0.4123 -2.7787 -0.3392 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355009339.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:34:08 Heat of formation + Delta-G solvation = -20.743707 kcal Electronic energy + Delta-G solvation = -18661.179682 eV Core-core repulsion = 15788.655496 eV Total energy + Delta-G solvation = -2872.524186 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.00478 -39.43473 -38.28445 -34.92016 -34.20882 -31.90142 -31.57523 -29.53626 -28.89767 -26.61319 -24.71634 -23.24932 -21.80436 -21.54222 -20.17973 -19.03310 -17.74541 -17.45387 -16.63571 -16.20258 -15.96311 -15.72411 -15.46612 -15.05856 -14.58983 -14.28261 -14.17479 -14.12692 -13.54938 -13.45896 -13.12135 -13.10242 -12.83417 -12.66040 -12.61514 -12.30135 -12.02118 -11.80774 -11.71593 -11.26511 -10.93934 -10.91655 -9.86337 -9.74482 -9.48515 -9.34312 -8.31025 -6.85704 0.46893 0.57022 1.39179 1.40491 1.56489 2.23615 2.46082 2.57472 3.01431 3.37161 3.52483 3.60373 3.77646 3.95961 4.02480 4.04906 4.20931 4.29288 4.35333 4.62825 4.69538 4.76361 4.78294 4.88101 4.96241 5.00020 5.04712 5.13588 5.22922 5.23834 5.31439 5.35350 5.65943 5.69250 5.80584 5.87289 6.18666 6.22234 6.28297 6.86085 7.54688 8.48218 8.66410 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.024422 B = 0.004794 C = 0.004186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.235249 B = 5839.815224 C = 6687.743264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.127 4.127 3 C 0.172 3.828 4 N -0.748 5.748 5 C 0.537 3.463 6 O -0.635 6.635 7 C -0.575 4.575 8 H 0.085 0.915 9 C 0.030 3.970 10 N -0.822 5.822 11 Si 0.998 3.002 12 H -0.263 1.263 13 H -0.271 1.271 14 H -0.249 1.249 15 C -0.141 4.141 16 C -0.110 4.110 17 H 0.098 0.902 18 C -0.053 4.053 19 C -0.134 4.134 20 C -0.125 4.125 21 C -0.132 4.132 22 C -0.122 4.122 23 C -0.125 4.125 24 H 0.051 0.949 25 H 0.050 0.950 26 H 0.082 0.918 27 H 0.031 0.969 28 H 0.036 0.964 29 H 0.392 0.608 30 H 0.275 0.725 31 H 0.100 0.900 32 H 0.125 0.875 33 H 0.117 0.883 34 H 0.135 0.865 35 H 0.142 0.858 36 H 0.144 0.856 37 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.724 -20.134 0.899 21.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.127 4.127 3 C 0.047 3.953 4 N -0.402 5.402 5 C 0.341 3.659 6 O -0.523 6.523 7 C -0.611 4.611 8 H 0.103 0.897 9 C -0.185 4.185 10 N -0.452 5.452 11 Si 0.817 3.183 12 H -0.187 1.187 13 H -0.196 1.196 14 H -0.172 1.172 15 C -0.178 4.178 16 C -0.128 4.128 17 H 0.116 0.884 18 C -0.053 4.053 19 C -0.152 4.152 20 C -0.143 4.143 21 C -0.150 4.150 22 C -0.140 4.140 23 C -0.143 4.143 24 H 0.070 0.930 25 H 0.069 0.931 26 H 0.100 0.900 27 H 0.050 0.950 28 H 0.054 0.946 29 H 0.226 0.774 30 H 0.085 0.915 31 H 0.118 0.882 32 H 0.143 0.857 33 H 0.135 0.865 34 H 0.153 0.847 35 H 0.160 0.840 36 H 0.162 0.838 37 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -7.359 -19.503 0.134 20.845 hybrid contribution 0.352 0.580 0.811 1.057 sum -7.007 -18.923 0.945 20.201 Atomic orbital electron populations 1.21283 0.90658 1.02281 1.01772 1.21675 0.95777 0.88856 1.06410 1.20454 0.97644 0.91951 0.85228 1.45764 1.69792 1.16318 1.08308 1.18633 0.76939 0.80105 0.90228 1.90543 1.53749 1.60769 1.47215 1.21406 1.39985 1.06139 0.93592 0.89678 1.26971 0.92275 0.95500 1.03788 1.70195 1.29316 1.10271 1.35378 0.85010 0.79797 0.77728 0.75765 1.18733 1.19613 1.17188 1.23404 1.02629 0.99192 0.92611 1.21148 0.99573 0.97550 0.94532 0.88405 1.19123 0.96715 0.95858 0.93574 1.21176 1.00519 0.99254 0.94225 1.21374 0.96245 0.95892 1.00802 1.21461 0.98979 1.00002 0.94582 1.21434 0.99305 0.98186 0.95102 1.21259 0.96172 0.96217 1.00645 0.93004 0.93067 0.89968 0.95032 0.94578 0.77435 0.91537 0.88204 0.85677 0.86509 0.84664 0.84019 0.83813 0.84669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.67 8.53 71.98 0.61 -2.05 16 2 C -0.13 -3.67 2.13 -52.18 -0.11 -3.78 16 3 C 0.17 6.97 5.56 86.38 0.48 7.45 16 4 N -0.75 -35.12 5.51 -467.40 -2.58 -37.69 16 5 C 0.54 32.21 7.74 86.36 0.67 32.88 16 6 O -0.63 -43.89 15.06 -4.30 -0.06 -43.96 16 7 C -0.57 -33.46 9.53 24.83 0.24 -33.22 16 8 H 0.09 4.48 7.86 -2.91 -0.02 4.45 16 9 C 0.03 1.69 5.49 85.30 0.47 2.16 16 10 N -0.82 -51.33 11.87 21.83 0.26 -51.07 16 11 Si 1.00 41.65 29.56 68.60 2.03 43.68 16 12 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 13 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 14 H -0.25 -9.63 7.11 99.48 0.71 -8.93 16 15 C -0.14 -3.24 9.16 30.60 0.28 -2.96 16 16 C -0.11 -2.89 5.65 -11.54 -0.07 -2.96 16 17 H 0.10 2.90 8.14 -2.39 -0.02 2.88 16 18 C -0.05 -1.25 4.94 -19.87 -0.10 -1.35 16 19 C -0.13 -3.17 9.74 22.27 0.22 -2.96 16 20 C -0.13 -2.48 10.05 22.27 0.22 -2.26 16 21 C -0.13 -2.27 10.05 22.27 0.22 -2.04 16 22 C -0.12 -2.07 10.05 22.27 0.22 -1.85 16 23 C -0.13 -2.45 7.89 22.27 0.18 -2.28 16 24 H 0.05 1.41 7.98 -2.39 -0.02 1.39 16 25 H 0.05 1.42 7.91 -2.39 -0.02 1.40 16 26 H 0.08 1.65 6.31 -2.39 -0.02 1.63 16 27 H 0.03 1.36 7.94 -2.39 -0.02 1.34 16 28 H 0.04 1.60 7.97 -2.38 -0.02 1.58 16 29 H 0.39 16.43 8.39 -92.71 -0.78 15.65 16 30 H 0.27 15.47 8.29 -92.71 -0.77 14.70 16 31 H 0.10 2.29 8.08 -2.39 -0.02 2.27 16 32 H 0.13 2.17 6.07 -2.39 -0.01 2.16 16 33 H 0.12 2.81 8.06 -2.91 -0.02 2.79 16 34 H 0.14 2.15 8.06 -2.91 -0.02 2.12 16 35 H 0.14 1.68 8.06 -2.91 -0.02 1.66 16 36 H 0.14 1.66 8.06 -2.91 -0.02 1.63 16 37 H 0.14 2.19 5.22 -2.91 -0.02 2.17 16 Total: -1.00 -76.76 312.20 3.48 -73.28 By element: Atomic # 1 Polarization: 30.67 SS G_CDS: 0.30 Total: 30.97 kcal Atomic # 6 Polarization: -18.75 SS G_CDS: 3.54 Total: -15.21 kcal Atomic # 7 Polarization: -86.44 SS G_CDS: -2.32 Total: -88.76 kcal Atomic # 8 Polarization: -43.89 SS G_CDS: -0.06 Total: -43.96 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 2.03 Total: 43.68 kcal Total: -76.76 3.48 -73.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355009339.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.537 kcal (2) G-P(sol) polarization free energy of solvation -76.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds