Wall clock time and date at job start Sun Mar 29 2020 23:24:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50702 * 120.00204 * 2 1 4 4 N 1.46500 * 109.46883 * 124.99760 * 3 2 1 5 5 C 1.46501 * 119.99839 * 90.00935 * 4 3 2 6 6 C 1.50693 * 109.47452 * 89.99372 * 5 4 3 7 7 H 1.08001 * 120.00181 * 0.02562 * 6 5 4 8 8 C 1.37877 * 120.00127 * 180.02562 * 6 5 4 9 9 N 1.31514 * 119.99959 * 0.02562 * 8 6 5 10 10 Si 1.86805 * 120.00286 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.46657 * 359.97438 * 10 8 6 12 12 H 1.48492 * 109.47342 * 119.99930 * 10 8 6 13 13 H 1.48500 * 109.47258 * 240.00265 * 10 8 6 14 14 C 1.34771 * 120.00056 * 269.99993 * 4 3 2 15 15 O 1.21281 * 119.99799 * 180.02562 * 14 4 3 16 16 C 1.50696 * 120.00411 * 0.02562 * 14 4 3 17 17 H 1.09007 * 115.54900 * 325.71878 * 16 14 4 18 18 C 1.52999 * 117.50085 * 180.02562 * 16 14 4 19 19 H 1.08997 * 117.50101 * 145.02055 * 18 16 14 20 20 C 1.52999 * 117.49981 * 359.97438 * 18 16 14 21 21 C 1.52997 * 117.50061 * 111.38414 * 16 14 4 22 22 F 1.39896 * 117.50109 * 214.97664 * 21 16 14 23 23 F 1.39896 * 117.50176 * 359.97438 * 21 16 14 24 24 H 1.08002 * 120.00352 * 0.02562 * 1 2 3 25 25 H 1.08005 * 119.99880 * 179.72197 * 1 2 3 26 26 H 1.08002 * 120.00350 * 180.02562 * 2 1 3 27 27 H 1.08998 * 109.47600 * 245.00508 * 3 2 1 28 28 H 1.09004 * 109.46937 * 5.00335 * 3 2 1 29 29 H 1.08992 * 109.46967 * 209.99658 * 5 4 3 30 30 H 1.09004 * 109.46864 * 329.99485 * 5 4 3 31 31 H 0.97002 * 119.99556 * 179.97438 * 9 8 6 32 32 H 1.09005 * 109.46610 * 60.00424 * 20 18 16 33 33 H 1.08999 * 109.47105 * 179.97438 * 20 18 16 34 34 H 1.08994 * 109.47288 * 300.00311 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3318 1.1315 5 6 4.3589 0.8257 0.9694 6 6 5.2615 1.9480 0.5260 7 1 4.8586 2.9393 0.3798 8 6 6.6016 1.7093 0.3068 9 7 7.0921 0.5020 0.4842 10 14 7.7207 3.1006 -0.2423 11 1 6.9298 4.3512 -0.3689 12 1 8.7978 3.2950 0.7612 13 1 8.3237 2.7617 -1.5563 14 6 2.5936 1.8222 2.3213 15 8 3.3638 1.8447 3.2579 16 6 1.1892 2.3425 2.4882 17 1 0.7615 2.8307 1.6124 18 6 0.7960 2.8866 3.8630 19 1 0.1096 3.7328 3.8920 20 6 1.8586 2.8603 4.9635 21 6 0.2414 1.5430 3.3845 22 9 -1.1078 1.4950 3.0177 23 9 0.7446 0.3846 3.9860 24 1 -0.5401 0.9353 -0.0004 25 1 -0.5400 -0.9354 -0.0045 26 1 1.8500 -0.9353 -0.0004 27 1 2.6212 1.4027 -0.9314 28 1 1.3585 2.1317 0.0896 29 1 4.7141 0.4278 1.9200 30 1 4.3666 0.0351 0.2190 31 1 8.0349 0.3341 0.3296 32 1 2.7177 3.4552 4.6532 33 1 1.4419 3.2757 5.8810 34 1 2.1735 1.8319 5.1400 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359392062.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:24:06 Heat of formation + Delta-G solvation = -78.317106 kcal Electronic energy + Delta-G solvation = -20155.624242 eV Core-core repulsion = 16726.373957 eV Total energy + Delta-G solvation = -3429.250285 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.112 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -48.60062 -47.26080 -39.53399 -36.41035 -35.40554 -33.24784 -32.10636 -28.81065 -27.55318 -25.68233 -24.20974 -22.05484 -21.07334 -19.96220 -18.39677 -17.95936 -16.72385 -16.44586 -16.21856 -15.87996 -15.21241 -14.68413 -14.22785 -13.92220 -13.88415 -13.76513 -13.46181 -13.05908 -12.91654 -12.63197 -12.36396 -12.16563 -11.82649 -11.62290 -11.27152 -11.12290 -10.86944 -10.68722 -10.43940 -10.20090 -9.82752 -9.67471 -9.32603 -8.86143 -8.47781 -7.77673 -6.08553 -4.13712 2.39506 2.60267 3.02990 3.27229 3.34945 3.38326 3.68763 3.78541 4.22669 4.39718 4.57435 4.68530 4.98920 5.15317 5.21734 5.26579 5.31577 5.56990 5.64707 5.65654 5.96729 6.01093 6.12817 6.14770 6.64578 6.75885 6.84165 7.00077 7.38202 7.44741 7.87191 8.17258 8.28016 8.81600 8.97039 9.51564 10.99587 Molecular weight = 259.11amu Principal moments of inertia in cm(-1) A = 0.024415 B = 0.006639 C = 0.005784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.581940 B = 4216.429635 C = 4839.430801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.160 4.160 3 C 0.133 3.867 4 N -0.585 5.585 5 C 0.246 3.754 6 C -0.528 4.528 7 H 0.059 0.941 8 C 0.062 3.938 9 N -0.893 5.893 10 Si 0.899 3.101 11 H -0.273 1.273 12 H -0.282 1.282 13 H -0.283 1.283 14 C 0.537 3.463 15 O -0.520 6.520 16 C -0.188 4.188 17 H 0.141 0.859 18 C -0.114 4.114 19 H 0.132 0.868 20 C -0.118 4.118 21 C 0.217 3.783 22 F -0.161 7.161 23 F -0.150 7.150 24 H 0.093 0.907 25 H 0.095 0.905 26 H 0.112 0.888 27 H 0.095 0.905 28 H 0.070 0.930 29 H 0.045 0.955 30 H 0.034 0.966 31 H 0.263 0.737 32 H 0.085 0.915 33 H 0.054 0.946 34 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.779 2.994 1.944 15.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.179 4.179 3 C 0.010 3.990 4 N -0.315 5.315 5 C 0.127 3.873 6 C -0.566 4.566 7 H 0.077 0.923 8 C -0.141 4.141 9 N -0.532 5.532 10 Si 0.726 3.274 11 H -0.198 1.198 12 H -0.208 1.208 13 H -0.210 1.210 14 C 0.322 3.678 15 O -0.397 6.397 16 C -0.211 4.211 17 H 0.158 0.842 18 C -0.134 4.134 19 H 0.150 0.850 20 C -0.175 4.175 21 C 0.180 3.820 22 F -0.141 7.141 23 F -0.130 7.130 24 H 0.112 0.888 25 H 0.114 0.886 26 H 0.130 0.870 27 H 0.113 0.887 28 H 0.088 0.912 29 H 0.064 0.936 30 H 0.052 0.948 31 H 0.073 0.927 32 H 0.103 0.897 33 H 0.073 0.927 34 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -14.167 2.845 2.424 14.652 hybrid contribution 0.379 0.431 -0.631 0.853 sum -13.788 3.276 1.794 14.285 Atomic orbital electron populations 1.23749 0.95683 1.01589 1.02088 1.23502 0.96076 0.99809 0.98519 1.20652 0.92291 0.94246 0.91849 1.48174 1.14612 1.60013 1.08680 1.19353 0.74797 0.94644 0.98457 1.21447 0.93415 0.95911 1.45878 0.92316 1.24937 0.97912 0.95809 0.95406 1.69943 1.14118 1.20178 1.48966 0.86436 0.80622 0.82147 0.78174 1.19793 1.20846 1.20951 1.18904 0.86240 0.79026 0.83602 1.90695 1.54545 1.55352 1.39071 1.23958 0.96520 1.02596 0.97995 0.84167 1.23711 1.00369 0.94058 0.95257 0.85021 1.21411 0.96719 1.04944 0.94418 1.19855 0.76764 0.83989 1.01440 1.93013 1.32395 1.96833 1.91864 1.93040 1.86145 1.50265 1.83531 0.88827 0.88641 0.87008 0.88714 0.91173 0.93648 0.94761 0.92707 0.89677 0.92721 0.90422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.41 14.32 29.02 0.42 -1.99 16 2 C -0.16 -2.35 9.85 -36.02 -0.35 -2.71 16 3 C 0.13 2.15 5.67 -5.19 -0.03 2.13 16 4 N -0.58 -12.16 2.44 -176.44 -0.43 -12.59 16 5 C 0.25 6.30 5.16 -5.20 -0.03 6.28 16 6 C -0.53 -14.61 9.39 -34.44 -0.32 -14.93 16 7 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 8 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 9 N -0.89 -26.19 13.29 55.43 0.74 -25.46 16 10 Si 0.90 21.51 29.54 -169.99 -5.02 16.48 16 11 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 13 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 14 C 0.54 10.93 7.07 -10.99 -0.08 10.86 16 15 O -0.52 -12.33 12.68 5.56 0.07 -12.26 16 16 C -0.19 -2.86 5.27 -91.78 -0.48 -3.35 16 17 H 0.14 1.74 6.44 -51.92 -0.33 1.41 16 18 C -0.11 -1.51 6.39 -90.60 -0.58 -2.09 16 19 H 0.13 1.29 8.14 -51.93 -0.42 0.86 16 20 C -0.12 -1.71 8.40 37.16 0.31 -1.40 16 21 C 0.22 3.22 5.13 -26.72 -0.14 3.08 16 22 F -0.16 -2.20 17.60 2.25 0.04 -2.16 16 23 F -0.15 -2.61 16.03 2.25 0.04 -2.57 16 24 H 0.09 1.04 7.84 -52.49 -0.41 0.63 16 25 H 0.10 1.08 8.06 -52.48 -0.42 0.66 16 26 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 27 H 0.09 1.56 8.07 -51.93 -0.42 1.14 16 28 H 0.07 0.94 5.65 -51.93 -0.29 0.65 16 29 H 0.05 1.32 7.42 -51.93 -0.39 0.93 16 30 H 0.03 0.89 8.07 -51.93 -0.42 0.47 16 31 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 32 H 0.08 1.38 7.26 -51.93 -0.38 1.00 16 33 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.08 1.32 6.22 -51.93 -0.32 1.00 16 LS Contribution 300.50 15.07 4.53 4.53 Total: -1.00 -31.15 300.50 -5.62 -36.77 By element: Atomic # 1 Polarization: 3.97 SS G_CDS: -4.20 Total: -0.23 kcal Atomic # 6 Polarization: -1.12 SS G_CDS: -1.38 Total: -2.50 kcal Atomic # 7 Polarization: -38.36 SS G_CDS: 0.31 Total: -38.05 kcal Atomic # 8 Polarization: -12.33 SS G_CDS: 0.07 Total: -12.26 kcal Atomic # 9 Polarization: -4.81 SS G_CDS: 0.08 Total: -4.73 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -31.15 -5.62 -36.77 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359392062.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.550 kcal (2) G-P(sol) polarization free energy of solvation -31.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds