Wall clock time and date at job start Sun Mar 29 2020 23:24:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50702 * 120.00204 * 2 1 4 4 N 1.46500 * 109.46883 * 124.99760 * 3 2 1 5 5 C 1.46501 * 119.99839 * 90.00935 * 4 3 2 6 6 C 1.50693 * 109.47452 * 89.99372 * 5 4 3 7 7 H 1.08001 * 120.00181 * 0.02562 * 6 5 4 8 8 C 1.37877 * 120.00127 * 180.02562 * 6 5 4 9 9 N 1.31514 * 119.99959 * 0.02562 * 8 6 5 10 10 Si 1.86805 * 120.00286 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.46657 * 359.97438 * 10 8 6 12 12 H 1.48492 * 109.47342 * 119.99930 * 10 8 6 13 13 H 1.48500 * 109.47258 * 240.00265 * 10 8 6 14 14 C 1.34771 * 120.00056 * 269.99993 * 4 3 2 15 15 O 1.21281 * 119.99799 * 180.02562 * 14 4 3 16 16 C 1.50696 * 120.00411 * 0.02562 * 14 4 3 17 17 H 1.09007 * 115.54900 * 325.71878 * 16 14 4 18 18 C 1.52999 * 117.50085 * 180.02562 * 16 14 4 19 19 H 1.08997 * 117.50101 * 145.02055 * 18 16 14 20 20 C 1.52999 * 117.49981 * 359.97438 * 18 16 14 21 21 C 1.52997 * 117.50061 * 111.38414 * 16 14 4 22 22 F 1.39896 * 117.50109 * 214.97664 * 21 16 14 23 23 F 1.39896 * 117.50176 * 359.97438 * 21 16 14 24 24 H 1.08002 * 120.00352 * 0.02562 * 1 2 3 25 25 H 1.08005 * 119.99880 * 179.72197 * 1 2 3 26 26 H 1.08002 * 120.00350 * 180.02562 * 2 1 3 27 27 H 1.08998 * 109.47600 * 245.00508 * 3 2 1 28 28 H 1.09004 * 109.46937 * 5.00335 * 3 2 1 29 29 H 1.08992 * 109.46967 * 209.99658 * 5 4 3 30 30 H 1.09004 * 109.46864 * 329.99485 * 5 4 3 31 31 H 0.97002 * 119.99556 * 179.97438 * 9 8 6 32 32 H 1.09005 * 109.46610 * 60.00424 * 20 18 16 33 33 H 1.08999 * 109.47105 * 179.97438 * 20 18 16 34 34 H 1.08994 * 109.47288 * 300.00311 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3318 1.1315 5 6 4.3589 0.8257 0.9694 6 6 5.2615 1.9480 0.5260 7 1 4.8586 2.9393 0.3798 8 6 6.6016 1.7093 0.3068 9 7 7.0921 0.5020 0.4842 10 14 7.7207 3.1006 -0.2423 11 1 6.9298 4.3512 -0.3689 12 1 8.7978 3.2950 0.7612 13 1 8.3237 2.7617 -1.5563 14 6 2.5936 1.8222 2.3213 15 8 3.3638 1.8447 3.2579 16 6 1.1892 2.3425 2.4882 17 1 0.7615 2.8307 1.6124 18 6 0.7960 2.8866 3.8630 19 1 0.1096 3.7328 3.8920 20 6 1.8586 2.8603 4.9635 21 6 0.2414 1.5430 3.3845 22 9 -1.1078 1.4950 3.0177 23 9 0.7446 0.3846 3.9860 24 1 -0.5401 0.9353 -0.0004 25 1 -0.5400 -0.9354 -0.0045 26 1 1.8500 -0.9353 -0.0004 27 1 2.6212 1.4027 -0.9314 28 1 1.3585 2.1317 0.0896 29 1 4.7141 0.4278 1.9200 30 1 4.3666 0.0351 0.2190 31 1 8.0349 0.3341 0.3296 32 1 2.7177 3.4552 4.6532 33 1 1.4419 3.2757 5.8810 34 1 2.1735 1.8319 5.1400 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359392062.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:24:06 Heat of formation + Delta-G solvation = -96.817130 kcal Electronic energy + Delta-G solvation = -20156.426464 eV Core-core repulsion = 16726.373957 eV Total energy + Delta-G solvation = -3430.052507 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.112 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.77638 -48.44520 -41.05520 -37.78103 -36.82388 -35.12054 -33.71802 -30.29166 -29.20480 -27.03610 -25.96170 -23.66575 -22.27721 -21.14489 -19.83050 -19.17802 -18.58689 -18.00643 -17.55273 -17.23591 -16.82659 -16.27989 -15.72452 -15.33693 -15.09384 -14.98064 -14.67747 -14.44849 -14.33082 -14.23284 -13.82791 -13.54743 -13.34622 -13.04808 -13.02412 -12.73323 -12.51500 -12.25541 -12.16440 -11.68738 -11.62981 -11.00536 -10.66230 -10.59620 -10.27995 -9.51380 -8.23380 -6.38387 1.22536 1.29071 1.37640 1.39583 1.51586 1.90021 2.22334 2.38158 2.45206 3.06539 3.07881 3.32715 3.52110 3.74020 4.00824 4.11783 4.23626 4.45130 4.50481 4.54625 4.78517 4.89954 4.95366 4.99208 5.04132 5.20901 5.45602 5.54626 5.67486 5.77962 5.79129 6.03372 6.64085 6.72929 7.24110 7.39028 8.84313 Molecular weight = 259.11amu Principal moments of inertia in cm(-1) A = 0.024415 B = 0.006639 C = 0.005784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.581940 B = 4216.429635 C = 4839.430801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.191 4.191 3 C 0.132 3.868 4 N -0.593 5.593 5 C 0.264 3.736 6 C -0.540 4.540 7 H 0.058 0.942 8 C 0.007 3.993 9 N -0.930 5.930 10 Si 0.970 3.030 11 H -0.264 1.264 12 H -0.282 1.282 13 H -0.271 1.271 14 C 0.526 3.474 15 O -0.567 6.567 16 C -0.192 4.192 17 H 0.178 0.822 18 C -0.093 4.093 19 H 0.183 0.817 20 C -0.118 4.118 21 C 0.214 3.786 22 F -0.148 7.148 23 F -0.172 7.172 24 H 0.118 0.882 25 H 0.109 0.891 26 H 0.090 0.910 27 H 0.084 0.916 28 H 0.107 0.893 29 H -0.002 1.002 30 H 0.020 0.980 31 H 0.267 0.733 32 H 0.063 0.937 33 H 0.089 0.911 34 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.219 5.213 1.315 18.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.210 4.210 3 C 0.011 3.989 4 N -0.322 5.322 5 C 0.143 3.857 6 C -0.579 4.579 7 H 0.076 0.924 8 C -0.192 4.192 9 N -0.569 5.569 10 Si 0.794 3.206 11 H -0.188 1.188 12 H -0.208 1.208 13 H -0.196 1.196 14 C 0.313 3.687 15 O -0.447 6.447 16 C -0.213 4.213 17 H 0.195 0.805 18 C -0.111 4.111 19 H 0.200 0.800 20 C -0.175 4.175 21 C 0.177 3.823 22 F -0.128 7.128 23 F -0.152 7.152 24 H 0.136 0.864 25 H 0.128 0.872 26 H 0.109 0.891 27 H 0.103 0.897 28 H 0.125 0.875 29 H 0.016 0.984 30 H 0.039 0.961 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.108 0.892 34 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -16.656 5.063 1.770 17.498 hybrid contribution 1.067 -0.334 -0.406 1.190 sum -15.589 4.729 1.363 16.348 Atomic orbital electron populations 1.24026 0.94569 1.03429 0.97723 1.23251 0.96956 0.98323 1.02507 1.20874 0.91973 0.96430 0.89657 1.48172 1.13553 1.59811 1.10686 1.18749 0.77771 0.94003 0.95227 1.21717 0.94200 0.96167 1.45811 0.92373 1.25886 0.99580 0.98423 0.95336 1.70071 1.14664 1.22345 1.49861 0.85334 0.78273 0.79015 0.77984 1.18771 1.20814 1.19624 1.19787 0.88262 0.78096 0.82533 1.90675 1.56569 1.56988 1.40429 1.23920 0.93059 1.03611 1.00754 0.80518 1.23974 0.99765 0.94477 0.92933 0.80011 1.21346 0.96823 1.02660 0.96704 1.19943 0.76994 0.83937 1.01459 1.93040 1.31263 1.96768 1.91777 1.93003 1.86597 1.51717 1.83921 0.86351 0.87239 0.89135 0.89725 0.87494 0.98412 0.96150 0.92426 0.91778 0.89220 0.93817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.48 14.32 67.79 0.97 -2.51 16 2 C -0.19 -5.48 9.85 25.65 0.25 -5.22 16 3 C 0.13 4.18 5.67 85.63 0.49 4.66 16 4 N -0.59 -25.27 2.44 -830.52 -2.03 -27.30 16 5 C 0.26 14.30 5.16 85.63 0.44 14.74 16 6 C -0.54 -30.84 9.39 25.60 0.24 -30.60 16 7 H 0.06 3.25 7.81 -2.91 -0.02 3.22 16 8 C 0.01 0.38 5.46 84.65 0.46 0.84 16 9 N -0.93 -56.38 13.29 21.45 0.28 -56.09 16 10 Si 0.97 44.51 29.54 68.60 2.03 46.54 16 11 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 12 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 13 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 14 C 0.53 21.62 7.07 87.66 0.62 22.24 16 15 O -0.57 -28.16 12.68 -3.03 -0.04 -28.20 16 16 C -0.19 -5.32 5.27 -11.54 -0.06 -5.38 16 17 H 0.18 3.52 6.44 -2.38 -0.02 3.50 16 18 C -0.09 -2.14 6.39 -10.78 -0.07 -2.21 16 19 H 0.18 2.44 8.14 -2.39 -0.02 2.42 16 20 C -0.12 -3.30 8.40 71.98 0.60 -2.70 16 21 C 0.21 5.78 5.13 30.60 0.16 5.93 16 22 F -0.15 -3.44 17.60 44.97 0.79 -2.65 16 23 F -0.17 -5.94 16.03 44.97 0.72 -5.22 16 24 H 0.12 2.02 7.84 -2.91 -0.02 2.00 16 25 H 0.11 2.11 8.06 -2.91 -0.02 2.09 16 26 H 0.09 2.94 8.06 -2.91 -0.02 2.91 16 27 H 0.08 2.79 8.07 -2.39 -0.02 2.77 16 28 H 0.11 2.52 5.65 -2.38 -0.01 2.51 16 29 H 0.00 -0.14 7.42 -2.39 -0.02 -0.16 16 30 H 0.02 1.14 8.07 -2.39 -0.02 1.12 16 31 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 32 H 0.06 2.07 7.26 -2.38 -0.02 2.06 16 33 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.04 1.51 6.22 -2.39 -0.01 1.50 16 Total: -1.00 -72.17 300.50 6.97 -65.20 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: 1.10 Total: 7.92 kcal Atomic # 6 Polarization: -4.31 SS G_CDS: 4.10 Total: -0.21 kcal Atomic # 7 Polarization: -81.65 SS G_CDS: -1.74 Total: -83.39 kcal Atomic # 8 Polarization: -28.16 SS G_CDS: -0.04 Total: -28.20 kcal Atomic # 9 Polarization: -9.38 SS G_CDS: 1.51 Total: -7.87 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -72.17 6.97 -65.20 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359392062.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.612 kcal (2) G-P(sol) polarization free energy of solvation -72.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds