Wall clock time and date at job start Sun Mar 29 2020 23:58:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86805 * 119.99968 * 2 1 4 4 H 1.48498 * 109.47238 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47146 * 300.00120 * 3 2 1 6 6 H 1.48504 * 109.47098 * 59.99961 * 3 2 1 7 7 C 1.37870 * 120.00169 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00294 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99802 * 0.02562 * 7 2 1 10 10 C 1.53011 * 109.47003 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47003 * 179.97438 * 10 9 7 12 12 O 1.21284 * 119.99890 * 359.97438 * 11 10 9 13 13 N 1.34771 * 119.99951 * 180.02562 * 11 10 9 14 14 C 1.46931 * 120.63145 * 359.97321 * 13 11 10 15 15 C 1.53191 * 108.76527 * 126.40558 * 14 13 11 16 16 C 1.53046 * 109.30997 * 54.65907 * 15 14 13 17 17 C 1.53039 * 109.52798 * 298.61471 * 16 15 14 18 18 F 1.39903 * 109.49464 * 301.42291 * 17 16 15 19 19 C 1.52997 * 109.50006 * 181.35447 * 17 16 15 20 20 O 1.42898 * 109.47173 * 179.97438 * 19 17 16 21 21 C 1.46919 * 120.63242 * 180.02562 * 13 11 10 22 22 H 0.97007 * 120.00073 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.47163 * 60.00280 * 9 7 2 24 24 H 1.08992 * 109.47278 * 299.99661 * 9 7 2 25 25 H 1.09000 * 109.46879 * 60.00171 * 10 9 7 26 26 H 1.08997 * 109.46879 * 300.00446 * 10 9 7 27 27 H 1.08998 * 109.58959 * 246.20295 * 14 13 11 28 28 H 1.09003 * 109.58181 * 6.48778 * 14 13 11 29 29 H 1.08998 * 109.50939 * 294.70294 * 15 14 13 30 30 H 1.09003 * 109.48831 * 174.59930 * 15 14 13 31 31 H 1.09002 * 109.46115 * 178.59924 * 16 15 14 32 32 H 1.09004 * 109.45806 * 58.62809 * 16 15 14 33 33 H 1.08992 * 109.47385 * 299.99987 * 19 17 16 34 34 H 1.09004 * 109.46581 * 60.00153 * 19 17 16 35 35 H 0.96697 * 113.99817 * 180.02562 * 20 19 17 36 36 H 1.08997 * 109.59005 * 113.79701 * 21 13 11 37 37 H 1.09000 * 109.58835 * 353.37037 * 21 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4918 -4.9672 0.0012 12 8 0.2789 -4.9671 0.0021 13 7 2.1656 -6.1343 0.0018 14 6 3.6349 -6.1505 0.0013 15 6 4.1186 -7.0159 1.1692 16 6 3.4750 -8.4011 1.0731 17 6 1.9536 -8.2662 1.1700 18 9 1.6157 -7.6494 2.3794 19 6 1.3128 -9.6541 1.1079 20 8 -0.1076 -9.5274 1.1990 21 6 1.4451 -7.4147 0.0019 22 1 -0.4850 0.8401 -0.0004 23 1 0.6247 -2.5570 -0.8897 24 1 0.6240 -2.5567 0.8902 25 1 2.8719 -3.6043 0.8905 26 1 2.8720 -3.6042 -0.8894 27 1 3.9954 -6.5696 -0.9381 28 1 4.0114 -5.1341 0.1164 29 1 3.8346 -6.5473 2.1114 30 1 5.2031 -7.1147 1.1237 31 1 3.8367 -9.0270 1.8890 32 1 3.7390 -8.8589 0.1198 33 1 1.5754 -10.1337 0.1650 34 1 1.6772 -10.2599 1.9376 35 1 -0.5805 -10.3703 1.1665 36 1 1.6274 -7.9367 -0.9375 37 1 0.3769 -7.2329 0.1199 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360630821.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:58:03 Heat of formation + Delta-G solvation = -147.420180 kcal Electronic energy + Delta-G solvation = -20116.426536 eV Core-core repulsion = 16807.640022 eV Total energy + Delta-G solvation = -3308.786515 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.137 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -47.62362 -39.62933 -37.51254 -36.47342 -33.48012 -32.87267 -31.60003 -30.70959 -26.85658 -25.90547 -24.77372 -22.39012 -21.60483 -20.20395 -18.49702 -17.70689 -17.06919 -16.41081 -15.98812 -15.58865 -15.29421 -15.06201 -14.86502 -14.39259 -14.14526 -13.78810 -13.34834 -13.08842 -12.98023 -12.53078 -12.28518 -12.14351 -11.85435 -11.56599 -11.25301 -11.05320 -10.91865 -10.73809 -10.67308 -10.53577 -10.36053 -9.91732 -9.56481 -9.11993 -8.93796 -8.41179 -8.27582 -5.91999 -3.96385 3.19678 3.29648 3.35293 3.42265 3.45576 3.67016 4.31014 4.35833 4.41449 4.50364 4.67955 4.75828 4.87803 5.08469 5.15010 5.26204 5.28090 5.42908 5.43828 5.54383 5.65101 5.72498 5.85323 6.05656 6.11429 6.25063 6.26165 6.71549 6.93786 7.30501 7.76928 7.79336 7.91580 8.12006 8.42675 8.79470 9.12329 9.66953 11.19064 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.037045 B = 0.004465 C = 0.004175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.660593 B = 6269.160254 C = 6704.619395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.525 4.525 8 H 0.056 0.944 9 C 0.036 3.964 10 C -0.127 4.127 11 C 0.514 3.486 12 O -0.528 6.528 13 N -0.625 5.625 14 C 0.106 3.894 15 C -0.137 4.137 16 C -0.137 4.137 17 C 0.110 3.890 18 F -0.193 7.193 19 C 0.059 3.941 20 O -0.559 6.559 21 C 0.098 3.902 22 H 0.260 0.740 23 H 0.023 0.977 24 H 0.024 0.976 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.066 0.934 28 H 0.096 0.904 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.064 0.936 34 H 0.058 0.942 35 H 0.382 0.618 36 H 0.074 0.926 37 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.288 -22.133 0.528 24.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.564 4.564 8 H 0.074 0.926 9 C -0.002 4.002 10 C -0.167 4.167 11 C 0.305 3.695 12 O -0.403 6.403 13 N -0.361 5.361 14 C -0.018 4.018 15 C -0.175 4.175 16 C -0.175 4.175 17 C 0.091 3.909 18 F -0.174 7.174 19 C -0.020 4.020 20 O -0.365 6.365 21 C -0.026 4.026 22 H 0.070 0.930 23 H 0.042 0.958 24 H 0.042 0.958 25 H 0.098 0.902 26 H 0.097 0.903 27 H 0.085 0.915 28 H 0.115 0.885 29 H 0.095 0.905 30 H 0.100 0.900 31 H 0.095 0.905 32 H 0.102 0.898 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.229 0.771 36 H 0.093 0.907 37 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 8.600 -21.320 0.588 22.996 hybrid contribution 0.418 0.170 0.087 0.459 sum 9.018 -21.149 0.675 23.002 Atomic orbital electron populations 1.70014 1.06061 1.26423 1.50307 1.25024 0.94809 0.99205 0.95349 0.86541 0.79990 0.83895 0.77561 1.19758 1.21039 1.21032 1.21249 0.92923 0.90984 1.51215 0.92570 1.18924 0.93213 0.89371 0.98672 1.21878 1.00721 0.91831 1.02228 1.21607 0.88459 0.85356 0.74093 1.90667 1.14408 1.87010 1.48190 1.48252 1.06397 1.05547 1.75928 1.21746 0.80100 1.02103 0.97807 1.21905 1.00501 0.94725 1.00354 1.22057 0.92624 0.99125 1.03683 1.21369 0.95130 0.91527 0.82922 1.92895 1.93631 1.84479 1.46384 1.22693 0.82490 0.95709 1.01096 1.86606 1.17275 1.35412 1.97165 1.21939 1.00259 0.84541 0.95865 0.93024 0.95819 0.95767 0.90236 0.90269 0.91545 0.88527 0.90472 0.89953 0.90468 0.89833 0.91814 0.92372 0.77110 0.90746 0.87225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.97 13.29 55.43 0.74 -27.23 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 16 4 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 7 C -0.53 -15.20 9.11 -34.44 -0.31 -15.52 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.04 1.00 4.26 -27.88 -0.12 0.88 16 10 C -0.13 -2.71 3.99 -27.88 -0.11 -2.82 16 11 C 0.51 10.83 7.70 -10.99 -0.08 10.74 16 12 O -0.53 -13.48 15.40 5.55 0.09 -13.40 16 13 N -0.63 -9.98 2.95 -172.74 -0.51 -10.49 16 14 C 0.11 1.22 6.34 -3.71 -0.02 1.20 16 15 C -0.14 -1.32 5.96 -26.61 -0.16 -1.48 16 16 C -0.14 -1.18 4.97 -26.69 -0.13 -1.31 16 17 C 0.11 1.32 1.03 -90.48 -0.09 1.22 16 18 F -0.19 -3.16 16.14 2.25 0.04 -3.13 16 19 C 0.06 0.53 6.24 37.16 0.23 0.76 16 20 O -0.56 -6.04 13.05 -35.23 -0.46 -6.50 16 21 C 0.10 1.40 5.24 -3.69 -0.02 1.38 16 22 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 23 H 0.02 0.72 8.10 -51.93 -0.42 0.29 16 24 H 0.02 0.74 8.10 -51.93 -0.42 0.32 16 25 H 0.08 1.57 7.69 -51.93 -0.40 1.17 16 26 H 0.08 1.52 7.94 -51.93 -0.41 1.11 16 27 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.10 1.13 5.93 -51.93 -0.31 0.82 16 29 H 0.08 0.91 7.73 -51.93 -0.40 0.51 16 30 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.38 2.04 9.12 45.56 0.42 2.45 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 37 H 0.11 1.97 6.73 -51.93 -0.35 1.62 16 LS Contribution 306.38 15.07 4.62 4.62 Total: -1.00 -37.69 306.38 -6.23 -43.93 By element: Atomic # 1 Polarization: 3.40 SS G_CDS: -4.80 Total: -1.40 kcal Atomic # 6 Polarization: -2.41 SS G_CDS: -0.92 Total: -3.33 kcal Atomic # 7 Polarization: -37.95 SS G_CDS: 0.23 Total: -37.72 kcal Atomic # 8 Polarization: -19.52 SS G_CDS: -0.37 Total: -19.90 kcal Atomic # 9 Polarization: -3.16 SS G_CDS: 0.04 Total: -3.13 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -37.69 -6.23 -43.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360630821.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.491 kcal (2) G-P(sol) polarization free energy of solvation -37.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds