Wall clock time and date at job start Sun Mar 29 2020 23:54:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00339 * 2 1 4 4 H 1.48494 * 109.47011 * 0.02562 * 3 2 1 5 5 H 1.48502 * 109.47438 * 120.00261 * 3 2 1 6 6 H 1.48502 * 109.47124 * 240.00583 * 3 2 1 7 7 C 1.37880 * 119.99689 * 180.27774 * 2 1 3 8 8 H 1.08003 * 119.99929 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00095 * 359.97438 * 7 2 1 10 10 H 1.09003 * 109.49632 * 300.06729 * 9 7 2 11 11 C 1.53038 * 109.49868 * 180.02562 * 9 7 2 12 12 C 1.53039 * 109.54042 * 178.68423 * 11 9 7 13 13 C 1.53191 * 109.31010 * 61.36236 * 12 11 9 14 14 N 1.46917 * 108.77845 * 305.36783 * 13 12 11 15 15 C 1.34782 * 120.63248 * 233.58921 * 14 13 12 16 16 O 1.21546 * 120.00187 * 174.16742 * 15 14 13 17 17 C 1.47846 * 119.99801 * 354.16361 * 15 14 13 18 18 C 1.39575 * 120.14565 * 318.69329 * 17 15 14 19 19 C 1.37962 * 119.85346 * 179.74300 * 18 17 15 20 20 C 1.38363 * 120.14017 * 0.53548 * 19 18 17 21 21 C 1.38357 * 120.29370 * 359.73581 * 20 19 18 22 22 C 1.37953 * 120.14413 * 359.97438 * 21 20 19 23 23 C 1.46921 * 118.74140 * 53.60702 * 14 13 12 24 24 H 0.96997 * 119.99548 * 359.72016 * 1 2 3 25 25 H 1.09006 * 109.45809 * 298.70600 * 11 9 7 26 26 H 1.08998 * 109.46240 * 58.66042 * 11 9 7 27 27 H 1.08993 * 109.49859 * 181.31632 * 12 11 9 28 28 H 1.09002 * 109.49367 * 301.38148 * 12 11 9 29 29 H 1.09004 * 109.58836 * 65.15856 * 13 12 11 30 30 H 1.09003 * 109.58624 * 185.57718 * 13 12 11 31 31 H 1.08005 * 120.07414 * 0.02562 * 18 17 15 32 32 H 1.07994 * 119.92931 * 180.27657 * 19 18 17 33 33 H 1.08005 * 119.84995 * 179.76802 * 20 19 18 34 34 H 1.08001 * 119.92594 * 180.02562 * 21 20 19 35 35 H 1.08007 * 120.06752 * 179.97438 * 22 21 20 36 36 H 1.09004 * 109.59361 * 186.60307 * 23 14 13 37 37 H 1.09001 * 109.58398 * 66.18013 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2843 2.7464 0.0006 5 1 3.1031 1.6963 1.2125 6 1 3.1029 1.6963 -1.2126 7 6 2.0045 -1.1941 -0.0058 8 1 3.0845 -1.1941 -0.0062 9 6 1.2509 -2.4992 -0.0115 10 1 0.6235 -2.5609 0.8777 11 6 2.2448 -3.6629 -0.0167 12 6 1.4808 -4.9887 0.0106 13 6 0.6055 -5.0948 -1.2421 14 7 -0.2530 -3.9052 -1.3214 15 6 -1.5894 -4.0296 -1.4444 16 8 -2.2981 -3.0430 -1.4025 17 6 -2.1933 -5.3662 -1.6305 18 6 -1.5901 -6.2960 -2.4789 19 6 -2.1559 -7.5434 -2.6440 20 6 -3.3247 -7.8696 -1.9792 21 6 -3.9307 -6.9505 -1.1411 22 6 -3.3720 -5.7019 -0.9627 23 6 0.3730 -2.5772 -1.2645 24 1 -0.4849 0.8401 0.0041 25 1 2.8560 -3.6144 -0.9179 26 1 2.8871 -3.5958 0.8614 27 1 2.1894 -5.8166 0.0306 28 1 0.8510 -5.0273 0.8995 29 1 1.2393 -5.1478 -2.1274 30 1 -0.0144 -5.9893 -1.1800 31 1 -0.6800 -6.0411 -3.0016 32 1 -1.6878 -8.2652 -3.2967 33 1 -3.7656 -8.8461 -2.1148 34 1 -4.8427 -7.2116 -0.6248 35 1 -3.8463 -4.9853 -0.3084 36 1 -0.4002 -1.8103 -1.2172 37 1 0.9879 -2.4248 -2.1515 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397612880.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:54:50 Heat of formation + Delta-G solvation = -13.171773 kcal Electronic energy + Delta-G solvation = -19369.422890 eV Core-core repulsion = 16497.227048 eV Total energy + Delta-G solvation = -2872.195842 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.04797 -38.18462 -36.58683 -33.47190 -31.91483 -30.97887 -30.92310 -29.58038 -25.23720 -25.02033 -22.73017 -22.56916 -21.71005 -19.92913 -18.61043 -17.06778 -16.37749 -16.07415 -15.48017 -14.89173 -14.57191 -14.34145 -14.01363 -13.70059 -13.37020 -13.22156 -12.72460 -12.64458 -12.56470 -12.06849 -11.84881 -11.56983 -11.11825 -10.94992 -10.86553 -10.50516 -10.40270 -10.22601 -9.87876 -9.36796 -9.12109 -8.97236 -8.90481 -8.73278 -8.42228 -7.73338 -5.98093 -4.07435 1.08098 1.36921 3.23940 3.32773 3.38785 3.39978 3.66757 3.97151 4.43848 4.82080 4.89096 4.93086 5.09668 5.31091 5.33580 5.44068 5.47675 5.56104 5.69034 5.83891 5.98847 6.00004 6.19349 6.32162 6.34746 6.43316 6.45389 6.61711 6.68770 6.85577 6.90621 6.98502 7.16010 7.29248 7.64971 7.88174 8.00795 8.25161 8.39688 8.84813 8.96968 9.58189 11.07117 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.034564 B = 0.005410 C = 0.004907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.906490 B = 5174.640664 C = 5704.426392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.063 3.937 3 Si 0.893 3.107 4 H -0.287 1.287 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.522 4.522 8 H 0.058 0.942 9 C 0.040 3.960 10 H 0.029 0.971 11 C -0.111 4.111 12 C -0.134 4.134 13 C 0.100 3.900 14 N -0.599 5.599 15 C 0.544 3.456 16 O -0.531 6.531 17 C -0.115 4.115 18 C -0.092 4.092 19 C -0.130 4.130 20 C -0.109 4.109 21 C -0.127 4.127 22 C -0.071 4.071 23 C 0.112 3.888 24 H 0.264 0.736 25 H 0.049 0.951 26 H 0.051 0.949 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.080 0.920 31 H 0.130 0.870 32 H 0.125 0.875 33 H 0.122 0.878 34 H 0.125 0.875 35 H 0.130 0.870 36 H 0.123 0.877 37 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.942 -16.003 -3.798 16.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.140 4.140 3 Si 0.720 3.280 4 H -0.213 1.213 5 H -0.203 1.203 6 H -0.202 1.202 7 C -0.561 4.561 8 H 0.076 0.924 9 C 0.021 3.979 10 H 0.047 0.953 11 C -0.148 4.148 12 C -0.172 4.172 13 C -0.023 4.023 14 N -0.331 5.331 15 C 0.331 3.669 16 O -0.408 6.408 17 C -0.118 4.118 18 C -0.110 4.110 19 C -0.148 4.148 20 C -0.127 4.127 21 C -0.146 4.146 22 C -0.090 4.090 23 C -0.008 4.008 24 H 0.074 0.926 25 H 0.068 0.932 26 H 0.070 0.930 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.098 0.902 31 H 0.148 0.852 32 H 0.143 0.857 33 H 0.140 0.860 34 H 0.143 0.857 35 H 0.148 0.852 36 H 0.141 0.859 37 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -3.461 -15.311 -3.782 16.146 hybrid contribution 0.557 0.829 -0.006 0.999 sum -2.904 -14.482 -3.788 15.249 Atomic orbital electron populations 1.69885 1.05739 1.26960 1.49161 1.25059 0.94876 0.99250 0.94829 0.86650 0.79566 0.83171 0.78566 1.21256 1.20291 1.20241 1.21042 0.92859 0.90140 1.52059 0.92410 1.18958 0.92627 0.92297 0.94003 0.95296 1.21633 0.98548 0.94107 1.00557 1.21952 0.98601 0.99068 0.97596 1.21943 0.93535 0.88424 0.98388 1.48428 1.05105 1.09079 1.70462 1.18348 0.82603 0.88101 0.77839 1.90803 1.60654 1.38960 1.50379 1.20229 0.96826 0.94953 0.99803 1.21436 0.99282 0.92971 0.97354 1.21074 0.96512 0.96617 1.00568 1.21264 0.95624 0.99330 0.96501 1.21105 1.00337 0.93667 0.99444 1.21263 0.93609 0.96362 0.97779 1.22323 0.98716 0.81161 0.98612 0.92575 0.93189 0.93014 0.92208 0.92168 0.92058 0.90237 0.85243 0.85713 0.86001 0.85666 0.85166 0.85896 0.93843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.93 11.40 55.43 0.63 -25.30 16 2 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 3 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 4 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.52 -14.24 8.56 -34.44 -0.29 -14.53 16 8 H 0.06 1.53 7.74 -52.48 -0.41 1.13 16 9 C 0.04 1.01 2.25 -91.65 -0.21 0.80 16 10 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 11 C -0.11 -2.22 5.11 -26.69 -0.14 -2.36 16 12 C -0.13 -2.21 6.08 -26.61 -0.16 -2.37 16 13 C 0.10 1.61 4.92 -3.72 -0.02 1.59 16 14 N -0.60 -12.31 2.97 -173.89 -0.52 -12.83 16 15 C 0.54 11.46 7.31 -12.33 -0.09 11.37 16 16 O -0.53 -13.52 16.36 5.32 0.09 -13.43 16 17 C -0.11 -1.88 5.09 -104.97 -0.53 -2.42 16 18 C -0.09 -1.21 7.40 -39.18 -0.29 -1.50 16 19 C -0.13 -1.38 10.03 -39.64 -0.40 -1.78 16 20 C -0.11 -1.11 10.04 -39.49 -0.40 -1.50 16 21 C -0.13 -1.46 10.03 -39.64 -0.40 -1.86 16 22 C -0.07 -1.05 9.65 -39.19 -0.38 -1.43 16 23 C 0.11 2.74 5.41 -3.71 -0.02 2.72 16 24 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 25 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 26 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 29 H 0.06 0.88 8.13 -51.93 -0.42 0.46 16 30 H 0.08 1.11 4.80 -51.93 -0.25 0.86 16 31 H 0.13 1.58 6.69 -52.48 -0.35 1.22 16 32 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 33 H 0.12 0.89 8.06 -52.48 -0.42 0.47 16 34 H 0.13 1.11 8.06 -52.49 -0.42 0.68 16 35 H 0.13 1.97 8.06 -52.48 -0.42 1.55 16 36 H 0.12 3.53 5.12 -51.93 -0.27 3.26 16 37 H 0.04 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 300.65 15.07 4.53 4.53 Total: -1.00 -31.73 300.65 -8.76 -40.49 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -5.06 Total: 1.80 kcal Atomic # 6 Polarization: -8.18 SS G_CDS: -3.42 Total: -11.60 kcal Atomic # 7 Polarization: -38.24 SS G_CDS: 0.12 Total: -38.12 kcal Atomic # 8 Polarization: -13.52 SS G_CDS: 0.09 Total: -13.43 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -31.73 -8.76 -40.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397612880.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.322 kcal (2) G-P(sol) polarization free energy of solvation -31.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds