Wall clock time and date at job start Sun Mar 29 2020 23:54:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00339 * 2 1 4 4 H 1.48494 * 109.47011 * 0.02562 * 3 2 1 5 5 H 1.48502 * 109.47438 * 120.00261 * 3 2 1 6 6 H 1.48502 * 109.47124 * 240.00583 * 3 2 1 7 7 C 1.37880 * 119.99689 * 180.27774 * 2 1 3 8 8 H 1.08003 * 119.99929 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00095 * 359.97438 * 7 2 1 10 10 H 1.09003 * 109.49632 * 300.06729 * 9 7 2 11 11 C 1.53038 * 109.49868 * 180.02562 * 9 7 2 12 12 C 1.53039 * 109.54042 * 178.68423 * 11 9 7 13 13 C 1.53191 * 109.31010 * 61.36236 * 12 11 9 14 14 N 1.46917 * 108.77845 * 305.36783 * 13 12 11 15 15 C 1.34782 * 120.63248 * 233.58921 * 14 13 12 16 16 O 1.21546 * 120.00187 * 174.16742 * 15 14 13 17 17 C 1.47846 * 119.99801 * 354.16361 * 15 14 13 18 18 C 1.39575 * 120.14565 * 318.69329 * 17 15 14 19 19 C 1.37962 * 119.85346 * 179.74300 * 18 17 15 20 20 C 1.38363 * 120.14017 * 0.53548 * 19 18 17 21 21 C 1.38357 * 120.29370 * 359.73581 * 20 19 18 22 22 C 1.37953 * 120.14413 * 359.97438 * 21 20 19 23 23 C 1.46921 * 118.74140 * 53.60702 * 14 13 12 24 24 H 0.96997 * 119.99548 * 359.72016 * 1 2 3 25 25 H 1.09006 * 109.45809 * 298.70600 * 11 9 7 26 26 H 1.08998 * 109.46240 * 58.66042 * 11 9 7 27 27 H 1.08993 * 109.49859 * 181.31632 * 12 11 9 28 28 H 1.09002 * 109.49367 * 301.38148 * 12 11 9 29 29 H 1.09004 * 109.58836 * 65.15856 * 13 12 11 30 30 H 1.09003 * 109.58624 * 185.57718 * 13 12 11 31 31 H 1.08005 * 120.07414 * 0.02562 * 18 17 15 32 32 H 1.07994 * 119.92931 * 180.27657 * 19 18 17 33 33 H 1.08005 * 119.84995 * 179.76802 * 20 19 18 34 34 H 1.08001 * 119.92594 * 180.02562 * 21 20 19 35 35 H 1.08007 * 120.06752 * 179.97438 * 22 21 20 36 36 H 1.09004 * 109.59361 * 186.60307 * 23 14 13 37 37 H 1.09001 * 109.58398 * 66.18013 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2843 2.7464 0.0006 5 1 3.1031 1.6963 1.2125 6 1 3.1029 1.6963 -1.2126 7 6 2.0045 -1.1941 -0.0058 8 1 3.0845 -1.1941 -0.0062 9 6 1.2509 -2.4992 -0.0115 10 1 0.6235 -2.5609 0.8777 11 6 2.2448 -3.6629 -0.0167 12 6 1.4808 -4.9887 0.0106 13 6 0.6055 -5.0948 -1.2421 14 7 -0.2530 -3.9052 -1.3214 15 6 -1.5894 -4.0296 -1.4444 16 8 -2.2981 -3.0430 -1.4025 17 6 -2.1933 -5.3662 -1.6305 18 6 -1.5901 -6.2960 -2.4789 19 6 -2.1559 -7.5434 -2.6440 20 6 -3.3247 -7.8696 -1.9792 21 6 -3.9307 -6.9505 -1.1411 22 6 -3.3720 -5.7019 -0.9627 23 6 0.3730 -2.5772 -1.2645 24 1 -0.4849 0.8401 0.0041 25 1 2.8560 -3.6144 -0.9179 26 1 2.8871 -3.5958 0.8614 27 1 2.1894 -5.8166 0.0306 28 1 0.8510 -5.0273 0.8995 29 1 1.2393 -5.1478 -2.1274 30 1 -0.0144 -5.9893 -1.1800 31 1 -0.6800 -6.0411 -3.0016 32 1 -1.6878 -8.2652 -3.2967 33 1 -3.7656 -8.8461 -2.1148 34 1 -4.8427 -7.2116 -0.6248 35 1 -3.8463 -4.9853 -0.3084 36 1 -0.4002 -1.8103 -1.2172 37 1 0.9879 -2.4248 -2.1515 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397612880.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:54:50 Heat of formation + Delta-G solvation = -32.644042 kcal Electronic energy + Delta-G solvation = -19370.267271 eV Core-core repulsion = 16497.227048 eV Total energy + Delta-G solvation = -2873.040223 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.46247 -39.41437 -38.27737 -35.37769 -33.62318 -32.26107 -31.89511 -31.24242 -27.15561 -26.60401 -23.99315 -23.77503 -23.15535 -21.50278 -20.13669 -18.69666 -17.99768 -17.50299 -16.87100 -16.51489 -16.29537 -15.47643 -15.40674 -15.20158 -14.72825 -14.50787 -14.33194 -14.29849 -13.90993 -13.53036 -13.49831 -12.87329 -12.71954 -12.56685 -12.29149 -12.25673 -11.99589 -11.85568 -11.64503 -11.18320 -10.97806 -10.71646 -10.53928 -9.91512 -9.82212 -9.43474 -8.12202 -6.30558 0.02732 0.43482 1.39747 1.41753 1.50231 1.78195 2.17877 2.41362 2.86396 3.15580 3.56085 3.94912 4.01788 4.10208 4.14555 4.25370 4.31503 4.52283 4.55052 4.56513 4.71658 4.77649 4.80256 4.91069 5.06021 5.09733 5.22280 5.24228 5.31594 5.43329 5.48787 5.52578 5.53651 5.62275 5.86335 5.96873 6.00848 6.30098 6.60272 6.82707 7.23401 7.40234 8.91180 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.034564 B = 0.005410 C = 0.004907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.906490 B = 5174.640664 C = 5704.426392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.008 3.992 3 Si 0.961 3.039 4 H -0.290 1.290 5 H -0.267 1.267 6 H -0.265 1.265 7 C -0.537 4.537 8 H 0.065 0.935 9 C 0.038 3.962 10 H -0.019 1.019 11 C -0.105 4.105 12 C -0.128 4.128 13 C 0.097 3.903 14 N -0.602 5.602 15 C 0.535 3.465 16 O -0.596 6.596 17 C -0.143 4.143 18 C -0.094 4.094 19 C -0.118 4.118 20 C -0.093 4.093 21 C -0.123 4.123 22 C -0.095 4.095 23 C 0.123 3.877 24 H 0.259 0.741 25 H 0.061 0.939 26 H 0.052 0.948 27 H 0.107 0.893 28 H 0.044 0.956 29 H 0.088 0.912 30 H 0.108 0.892 31 H 0.139 0.861 32 H 0.165 0.835 33 H 0.164 0.836 34 H 0.152 0.848 35 H 0.106 0.894 36 H 0.074 0.926 37 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.709 -19.857 -5.011 20.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.191 4.191 3 Si 0.786 3.214 4 H -0.216 1.216 5 H -0.192 1.192 6 H -0.190 1.190 7 C -0.576 4.576 8 H 0.083 0.917 9 C 0.019 3.981 10 H 0.000 1.000 11 C -0.142 4.142 12 C -0.165 4.165 13 C -0.024 4.024 14 N -0.332 5.332 15 C 0.325 3.675 16 O -0.478 6.478 17 C -0.147 4.147 18 C -0.112 4.112 19 C -0.135 4.135 20 C -0.111 4.111 21 C -0.141 4.141 22 C -0.114 4.114 23 C 0.001 3.999 24 H 0.068 0.932 25 H 0.080 0.920 26 H 0.071 0.929 27 H 0.126 0.874 28 H 0.063 0.937 29 H 0.106 0.894 30 H 0.126 0.874 31 H 0.157 0.843 32 H 0.183 0.817 33 H 0.182 0.818 34 H 0.170 0.830 35 H 0.125 0.875 36 H 0.093 0.907 37 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -2.185 -19.219 -4.992 19.977 hybrid contribution 0.120 1.923 0.372 1.962 sum -2.065 -17.296 -4.619 18.021 Atomic orbital electron populations 1.70109 1.07609 1.27363 1.50570 1.25952 0.95532 1.03143 0.94505 0.85571 0.78212 0.78463 0.79201 1.21557 1.19209 1.18967 1.21504 0.93363 0.91403 1.51291 0.91706 1.18899 0.93095 0.94089 0.92023 1.00046 1.21521 0.97597 0.93960 1.01159 1.21935 0.98962 0.98452 0.97199 1.22312 0.93539 0.87318 0.99269 1.48454 1.05765 1.09055 1.69970 1.19258 0.82371 0.89636 0.76271 1.90747 1.62061 1.41680 1.53317 1.19901 0.98344 0.93170 1.03237 1.21569 0.99733 0.93358 0.96541 1.21529 0.96204 0.95758 1.00031 1.21799 0.94768 1.00365 0.94134 1.21408 1.01001 0.92155 0.99535 1.21271 0.93754 0.97888 0.98455 1.21752 0.97196 0.82670 0.98248 0.93155 0.91998 0.92878 0.87426 0.93726 0.89390 0.87389 0.84280 0.81717 0.81805 0.83032 0.87544 0.90728 0.93969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.65 11.40 21.45 0.24 -57.40 16 2 C 0.01 0.46 5.30 84.66 0.45 0.90 16 3 Si 0.96 45.02 29.54 68.60 2.03 47.05 16 4 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 5 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 6 H -0.26 -11.82 7.11 99.48 0.71 -11.12 16 7 C -0.54 -30.23 8.56 25.60 0.22 -30.01 16 8 H 0.06 3.46 7.74 -2.91 -0.02 3.44 16 9 C 0.04 1.99 2.25 -11.46 -0.03 1.97 16 10 H -0.02 -1.13 8.14 -2.39 -0.02 -1.15 16 11 C -0.10 -4.13 5.11 30.62 0.16 -3.98 16 12 C -0.13 -3.95 6.08 30.67 0.19 -3.76 16 13 C 0.10 2.91 4.92 86.36 0.42 3.34 16 14 N -0.60 -25.64 2.97 -822.33 -2.44 -28.08 16 15 C 0.53 23.94 7.31 86.79 0.63 24.57 16 16 O -0.60 -33.37 16.36 -3.86 -0.06 -33.43 16 17 C -0.14 -4.73 5.09 -20.09 -0.10 -4.83 16 18 C -0.09 -2.20 7.40 22.53 0.17 -2.03 16 19 C -0.12 -1.88 10.03 22.23 0.22 -1.66 16 20 C -0.09 -1.39 10.04 22.33 0.22 -1.17 16 21 C -0.12 -2.47 10.03 22.23 0.22 -2.25 16 22 C -0.09 -2.82 9.65 22.52 0.22 -2.61 16 23 C 0.12 6.42 5.41 86.36 0.47 6.89 16 24 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 25 H 0.06 2.29 8.14 -2.38 -0.02 2.27 16 26 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 27 H 0.11 2.39 8.14 -2.39 -0.02 2.37 16 28 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.09 2.22 8.13 -2.38 -0.02 2.20 16 30 H 0.11 2.68 4.80 -2.39 -0.01 2.67 16 31 H 0.14 2.93 6.69 -2.91 -0.02 2.91 16 32 H 0.17 1.41 8.06 -2.91 -0.02 1.38 16 33 H 0.16 1.19 8.06 -2.91 -0.02 1.17 16 34 H 0.15 2.18 8.06 -2.91 -0.02 2.16 16 35 H 0.11 3.55 8.06 -2.91 -0.02 3.52 16 36 H 0.07 4.66 5.12 -2.38 -0.01 4.65 16 37 H 0.04 2.14 8.14 -2.39 -0.02 2.12 16 Total: -1.00 -77.87 300.65 4.28 -73.58 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: 1.05 Total: 12.91 kcal Atomic # 6 Polarization: -18.08 SS G_CDS: 3.46 Total: -14.62 kcal Atomic # 7 Polarization: -83.29 SS G_CDS: -2.20 Total: -85.49 kcal Atomic # 8 Polarization: -33.37 SS G_CDS: -0.06 Total: -33.43 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -77.87 4.28 -73.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397612880.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.939 kcal (2) G-P(sol) polarization free energy of solvation -77.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds