Wall clock time and date at job start Sun Mar 29 2020 23:43:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00053 * 2 1 4 4 H 1.48506 * 109.47186 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46905 * 299.99530 * 3 2 1 6 6 H 1.48494 * 109.47159 * 59.99796 * 3 2 1 7 7 C 1.37886 * 119.99860 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99853 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99789 * 0.02562 * 7 2 1 10 10 N 1.46498 * 109.46769 * 179.97438 * 9 7 2 11 11 C 1.34777 * 119.99828 * 179.72341 * 10 9 7 12 12 O 1.21283 * 120.00222 * 0.28168 * 11 10 9 13 13 C 1.50703 * 120.00290 * 180.27728 * 11 10 9 14 14 C 1.50701 * 109.47355 * 180.02562 * 13 11 10 15 15 C 1.38253 * 120.00012 * 269.72511 * 14 13 11 16 16 C 1.38209 * 119.99915 * 179.78541 * 15 14 13 17 17 C 1.38259 * 119.99702 * 0.47005 * 16 15 14 18 18 C 1.38209 * 120.00394 * 359.76332 * 17 16 15 19 19 C 1.50697 * 120.00461 * 180.02562 * 18 17 16 20 20 C 1.52999 * 117.49512 * 8.64583 * 19 18 17 21 21 C 1.53001 * 60.00066 * 252.51166 * 20 19 18 22 22 C 1.38212 * 119.99633 * 90.00192 * 14 13 11 23 23 H 0.96999 * 120.00067 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.47210 * 60.00161 * 9 7 2 25 25 H 1.08994 * 109.47121 * 300.00131 * 9 7 2 26 26 H 0.97001 * 120.00384 * 0.02562 * 10 9 7 27 27 H 1.08998 * 109.46954 * 300.00581 * 13 11 10 28 28 H 1.09002 * 109.46946 * 59.99717 * 13 11 10 29 29 H 1.07997 * 120.00045 * 0.02562 * 15 14 13 30 30 H 1.08001 * 120.00342 * 180.25021 * 16 15 14 31 31 H 1.08009 * 119.99413 * 179.78679 * 17 16 15 32 32 H 1.08997 * 115.55016 * 154.35126 * 19 18 17 33 33 H 1.09004 * 117.50463 * 359.97438 * 20 19 18 34 34 H 1.09005 * 117.49919 * 145.02426 * 20 19 18 35 35 H 1.09008 * 117.49672 * 252.51323 * 21 20 19 36 36 H 1.08998 * 117.52185 * 107.48536 * 21 20 19 37 37 H 1.07997 * 120.00355 * 359.97438 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 1.7537 -4.8834 0.0062 12 8 0.5613 -5.1050 0.0061 13 6 2.7329 -6.0289 0.0125 14 6 1.9793 -7.3340 0.0174 15 6 1.6372 -7.9301 1.2169 16 6 0.9422 -9.1248 1.2214 17 6 0.5977 -9.7285 0.0263 18 6 0.9440 -9.1350 -1.1729 19 6 0.5680 -9.7928 -2.4756 20 6 -0.3664 -11.0026 -2.4121 21 6 1.1150 -11.1966 -2.7418 22 6 1.6354 -7.9377 -1.1774 23 1 -0.4850 0.8400 -0.0004 24 1 0.6246 -2.5571 -0.8897 25 1 0.6240 -2.5567 0.8902 26 1 3.1566 -3.4355 0.0009 27 1 3.3604 -5.9753 -0.8771 28 1 3.3588 -5.9669 0.9027 29 1 1.9096 -7.4604 2.1504 30 1 0.6714 -9.5885 2.1584 31 1 0.0576 -10.6639 0.0298 32 1 0.4663 -9.1221 -3.3287 33 1 -0.7089 -11.3231 -1.4282 34 1 -1.0832 -11.1281 -3.2237 35 1 1.3728 -11.4497 -3.7703 36 1 1.7472 -11.6443 -1.9750 37 1 1.9062 -7.4741 -2.1144 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000412285427.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:43:40 Heat of formation + Delta-G solvation = -2.721701 kcal Electronic energy + Delta-G solvation = -18021.450447 eV Core-core repulsion = 15149.707754 eV Total energy + Delta-G solvation = -2871.742693 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.86974 -38.58204 -36.78610 -34.15616 -32.53640 -32.17027 -30.70601 -28.20451 -26.42167 -23.79409 -22.87886 -22.50237 -21.84337 -20.07605 -19.28364 -17.17630 -16.81306 -15.93424 -15.63472 -15.26786 -15.07454 -14.61910 -14.31037 -14.01336 -13.78254 -13.05317 -12.91435 -12.45894 -12.27462 -12.16788 -11.94609 -11.70211 -11.41101 -11.16594 -10.95279 -10.91114 -10.86965 -10.68471 -10.44849 -10.30790 -9.37414 -9.12589 -8.73482 -8.59087 -8.37453 -7.86088 -6.16397 -4.23293 1.43138 1.52279 3.23409 3.30411 3.33506 3.40962 3.53582 3.98016 4.24476 4.40199 4.48743 4.71313 4.82682 4.88858 4.99815 5.09541 5.18406 5.19691 5.42554 5.45589 5.52779 5.62154 5.67424 5.68177 5.78839 5.90364 5.93641 6.15456 6.19020 6.57307 6.67130 6.75929 7.11938 7.32729 7.46105 7.53049 7.67775 7.97732 8.64712 8.79356 9.13400 9.43560 10.93870 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.040027 B = 0.003387 C = 0.003304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.367576 B = 8265.215611 C = 8472.622809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.542 4.542 8 H 0.063 0.937 9 C 0.249 3.751 10 N -0.715 5.715 11 C 0.498 3.502 12 O -0.548 6.548 13 C -0.107 4.107 14 C -0.050 4.050 15 C -0.110 4.110 16 C -0.116 4.116 17 C -0.127 4.127 18 C -0.054 4.054 19 C -0.114 4.114 20 C -0.178 4.178 21 C -0.171 4.171 22 C -0.099 4.099 23 H 0.265 0.735 24 H 0.026 0.974 25 H 0.026 0.974 26 H 0.390 0.610 27 H 0.097 0.903 28 H 0.097 0.903 29 H 0.119 0.881 30 H 0.119 0.881 31 H 0.118 0.882 32 H 0.112 0.888 33 H 0.098 0.902 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.490 -20.082 -1.988 20.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.581 4.581 8 H 0.082 0.918 9 C 0.129 3.871 10 N -0.363 5.363 11 C 0.283 3.717 12 O -0.426 6.426 13 C -0.147 4.147 14 C -0.050 4.050 15 C -0.128 4.128 16 C -0.134 4.134 17 C -0.145 4.145 18 C -0.054 4.054 19 C -0.132 4.132 20 C -0.215 4.215 21 C -0.208 4.208 22 C -0.117 4.117 23 H 0.075 0.925 24 H 0.044 0.956 25 H 0.044 0.956 26 H 0.223 0.777 27 H 0.115 0.885 28 H 0.116 0.884 29 H 0.137 0.863 30 H 0.138 0.862 31 H 0.136 0.864 32 H 0.130 0.870 33 H 0.116 0.884 34 H 0.115 0.885 35 H 0.114 0.886 36 H 0.113 0.887 37 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 4.453 -20.078 -1.992 20.662 hybrid contribution 0.787 1.170 0.017 1.410 sum 5.239 -18.909 -1.974 19.720 Atomic orbital electron populations 1.69989 1.06117 1.27176 1.49004 1.24967 0.94917 0.99482 0.94734 0.86359 0.79826 0.82967 0.77749 1.19623 1.20798 1.20804 1.21273 0.93293 0.90462 1.53048 0.91842 1.19095 0.88343 0.82005 0.97690 1.46468 1.11073 1.06109 1.72678 1.20332 0.89435 0.84133 0.77815 1.90687 1.16805 1.84826 1.50298 1.20752 0.97932 0.91338 1.04706 1.19313 0.97996 0.94403 0.93287 1.20979 0.98824 0.95525 0.97473 1.21011 0.98797 0.95919 0.97720 1.20925 1.01196 1.00341 0.92052 1.19012 0.98359 0.95064 0.92985 1.21027 1.04700 0.90562 0.96908 1.23055 0.93117 1.02019 1.03287 1.23013 0.96726 0.98504 1.02570 1.20750 0.98539 0.94772 0.97608 0.92508 0.95611 0.95605 0.77723 0.88479 0.88438 0.86253 0.86250 0.86406 0.86971 0.88386 0.88534 0.88611 0.88672 0.86267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.30 13.29 55.43 0.74 -25.56 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.90 20.91 29.54 -169.99 -5.02 15.88 16 4 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 5 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.54 -14.80 9.28 -34.44 -0.32 -15.12 16 8 H 0.06 1.62 7.60 -52.49 -0.40 1.22 16 9 C 0.25 6.69 5.43 -5.19 -0.03 6.66 16 10 N -0.71 -15.09 5.55 -61.47 -0.34 -15.44 16 11 C 0.50 10.03 7.82 -10.98 -0.09 9.95 16 12 O -0.55 -13.54 16.03 5.55 0.09 -13.46 16 13 C -0.11 -1.53 5.83 -29.03 -0.17 -1.70 16 14 C -0.05 -0.74 4.37 -104.63 -0.46 -1.20 16 15 C -0.11 -1.55 9.70 -39.59 -0.38 -1.93 16 16 C -0.12 -1.48 10.05 -39.58 -0.40 -1.88 16 17 C -0.13 -1.58 9.30 -39.58 -0.37 -1.94 16 18 C -0.05 -0.71 5.61 -104.63 -0.59 -1.30 16 19 C -0.11 -1.23 6.04 -91.77 -0.55 -1.79 16 20 C -0.18 -1.59 9.86 -26.73 -0.26 -1.86 16 21 C -0.17 -1.48 10.16 -26.73 -0.27 -1.75 16 22 C -0.10 -1.42 9.39 -39.58 -0.37 -1.79 16 23 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 24 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 25 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.39 6.96 8.32 -40.82 -0.34 6.62 16 27 H 0.10 1.15 8.08 -51.93 -0.42 0.73 16 28 H 0.10 1.15 8.08 -51.93 -0.42 0.73 16 29 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 30 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 31 H 0.12 1.19 6.02 -52.48 -0.32 0.88 16 32 H 0.11 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.10 0.84 6.18 -51.93 -0.32 0.52 16 34 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.10 0.70 8.14 -51.92 -0.42 0.28 16 36 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.12 1.59 8.06 -52.49 -0.42 1.16 16 LS Contribution 319.65 15.07 4.82 4.82 Total: -1.00 -33.13 319.65 -9.23 -42.36 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -5.15 Total: 5.39 kcal Atomic # 6 Polarization: -9.64 SS G_CDS: -4.36 Total: -14.00 kcal Atomic # 7 Polarization: -41.39 SS G_CDS: 0.40 Total: -41.00 kcal Atomic # 8 Polarization: -13.54 SS G_CDS: 0.09 Total: -13.46 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -33.13 -9.23 -42.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412285427.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.639 kcal (2) G-P(sol) polarization free energy of solvation -33.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds