Wall clock time and date at job start Sun Mar 29 2020 23:43:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00053 * 2 1 4 4 H 1.48506 * 109.47186 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46905 * 299.99530 * 3 2 1 6 6 H 1.48494 * 109.47159 * 59.99796 * 3 2 1 7 7 C 1.37886 * 119.99860 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99853 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99789 * 0.02562 * 7 2 1 10 10 N 1.46498 * 109.46769 * 179.97438 * 9 7 2 11 11 C 1.34777 * 119.99828 * 179.72341 * 10 9 7 12 12 O 1.21283 * 120.00222 * 0.28168 * 11 10 9 13 13 C 1.50703 * 120.00290 * 180.27728 * 11 10 9 14 14 C 1.50701 * 109.47355 * 180.02562 * 13 11 10 15 15 C 1.38253 * 120.00012 * 269.72511 * 14 13 11 16 16 C 1.38209 * 119.99915 * 179.78541 * 15 14 13 17 17 C 1.38259 * 119.99702 * 0.47005 * 16 15 14 18 18 C 1.38209 * 120.00394 * 359.76332 * 17 16 15 19 19 C 1.50697 * 120.00461 * 180.02562 * 18 17 16 20 20 C 1.52999 * 117.49512 * 8.64583 * 19 18 17 21 21 C 1.53001 * 60.00066 * 252.51166 * 20 19 18 22 22 C 1.38212 * 119.99633 * 90.00192 * 14 13 11 23 23 H 0.96999 * 120.00067 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.47210 * 60.00161 * 9 7 2 25 25 H 1.08994 * 109.47121 * 300.00131 * 9 7 2 26 26 H 0.97001 * 120.00384 * 0.02562 * 10 9 7 27 27 H 1.08998 * 109.46954 * 300.00581 * 13 11 10 28 28 H 1.09002 * 109.46946 * 59.99717 * 13 11 10 29 29 H 1.07997 * 120.00045 * 0.02562 * 15 14 13 30 30 H 1.08001 * 120.00342 * 180.25021 * 16 15 14 31 31 H 1.08009 * 119.99413 * 179.78679 * 17 16 15 32 32 H 1.08997 * 115.55016 * 154.35126 * 19 18 17 33 33 H 1.09004 * 117.50463 * 359.97438 * 20 19 18 34 34 H 1.09005 * 117.49919 * 145.02426 * 20 19 18 35 35 H 1.09008 * 117.49672 * 252.51323 * 21 20 19 36 36 H 1.08998 * 117.52185 * 107.48536 * 21 20 19 37 37 H 1.07997 * 120.00355 * 359.97438 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 1.7537 -4.8834 0.0062 12 8 0.5613 -5.1050 0.0061 13 6 2.7329 -6.0289 0.0125 14 6 1.9793 -7.3340 0.0174 15 6 1.6372 -7.9301 1.2169 16 6 0.9422 -9.1248 1.2214 17 6 0.5977 -9.7285 0.0263 18 6 0.9440 -9.1350 -1.1729 19 6 0.5680 -9.7928 -2.4756 20 6 -0.3664 -11.0026 -2.4121 21 6 1.1150 -11.1966 -2.7418 22 6 1.6354 -7.9377 -1.1774 23 1 -0.4850 0.8400 -0.0004 24 1 0.6246 -2.5571 -0.8897 25 1 0.6240 -2.5567 0.8902 26 1 3.1566 -3.4355 0.0009 27 1 3.3604 -5.9753 -0.8771 28 1 3.3588 -5.9669 0.9027 29 1 1.9096 -7.4604 2.1504 30 1 0.6714 -9.5885 2.1584 31 1 0.0576 -10.6639 0.0298 32 1 0.4663 -9.1221 -3.3287 33 1 -0.7089 -11.3231 -1.4282 34 1 -1.0832 -11.1281 -3.2237 35 1 1.3728 -11.4497 -3.7703 36 1 1.7472 -11.6443 -1.9750 37 1 1.9062 -7.4741 -2.1144 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000412285427.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:43:40 Heat of formation + Delta-G solvation = -23.077638 kcal Electronic energy + Delta-G solvation = -18022.333146 eV Core-core repulsion = 15149.707754 eV Total energy + Delta-G solvation = -2872.625393 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.03686 -40.03033 -37.68093 -36.12213 -34.37228 -33.51492 -31.67366 -29.88137 -28.01027 -24.90359 -24.48515 -23.42006 -22.86071 -21.58934 -20.49862 -18.92652 -17.86419 -17.46243 -17.03101 -16.91573 -16.31009 -16.05155 -15.71780 -15.18721 -14.83738 -14.66006 -14.07164 -14.02825 -14.00487 -13.54289 -13.09818 -12.90155 -12.86472 -12.70115 -12.42988 -12.22343 -12.02512 -11.83881 -11.53567 -11.46170 -11.22347 -10.82413 -10.81911 -9.82574 -9.65992 -9.36880 -8.29941 -6.46728 0.40900 0.49642 1.42871 1.44093 1.57696 1.79008 2.31868 2.51655 2.85393 3.04951 3.19919 3.57990 3.76373 3.97541 4.02507 4.13850 4.18099 4.21958 4.30497 4.42934 4.53755 4.63274 4.77630 4.80760 4.97574 5.08449 5.13451 5.17886 5.20537 5.23183 5.26544 5.49053 5.57471 5.67995 5.70247 5.71832 5.84439 6.13563 6.65065 6.92570 7.22987 7.51887 8.82590 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.040027 B = 0.003387 C = 0.003304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.367576 B = 8265.215611 C = 8472.622809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.986 3.014 4 H -0.252 1.252 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.555 4.555 8 H 0.085 0.915 9 C 0.266 3.734 10 N -0.709 5.709 11 C 0.496 3.504 12 O -0.599 6.599 13 C -0.091 4.091 14 C -0.072 4.072 15 C -0.129 4.129 16 C -0.121 4.121 17 C -0.132 4.132 18 C -0.061 4.061 19 C -0.139 4.139 20 C -0.173 4.173 21 C -0.156 4.156 22 C -0.121 4.121 23 H 0.268 0.732 24 H -0.015 1.015 25 H -0.015 1.015 26 H 0.410 0.590 27 H 0.126 0.874 28 H 0.129 0.871 29 H 0.128 0.872 30 H 0.144 0.856 31 H 0.141 0.859 32 H 0.108 0.892 33 H 0.103 0.897 34 H 0.108 0.892 35 H 0.111 0.889 36 H 0.098 0.902 37 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.482 -20.964 -2.020 22.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.198 4.198 3 Si 0.809 3.191 4 H -0.175 1.175 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.592 4.592 8 H 0.103 0.897 9 C 0.143 3.857 10 N -0.359 5.359 11 C 0.284 3.716 12 O -0.481 6.481 13 C -0.130 4.130 14 C -0.072 4.072 15 C -0.147 4.147 16 C -0.139 4.139 17 C -0.150 4.150 18 C -0.061 4.061 19 C -0.158 4.158 20 C -0.209 4.209 21 C -0.192 4.192 22 C -0.139 4.139 23 H 0.077 0.923 24 H 0.003 0.997 25 H 0.003 0.997 26 H 0.246 0.754 27 H 0.144 0.856 28 H 0.147 0.853 29 H 0.146 0.854 30 H 0.162 0.838 31 H 0.159 0.841 32 H 0.126 0.874 33 H 0.121 0.879 34 H 0.126 0.874 35 H 0.129 0.871 36 H 0.116 0.884 37 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 6.501 -20.992 -2.025 22.069 hybrid contribution 0.092 1.334 0.014 1.338 sum 6.593 -19.657 -2.011 20.831 Atomic orbital electron populations 1.70152 1.08347 1.28504 1.50094 1.26104 0.95786 1.04026 0.93871 0.85089 0.79132 0.77199 0.77659 1.17486 1.20477 1.20472 1.21664 0.94358 0.90514 1.52698 0.89664 1.18522 0.88764 0.84523 0.93882 1.46208 1.11206 1.05464 1.73004 1.21396 0.89809 0.84806 0.75595 1.90659 1.19617 1.85548 1.52226 1.20720 0.96573 0.88106 1.07600 1.19487 0.99065 0.94811 0.93880 1.21240 0.99480 0.96376 0.97622 1.21370 0.97991 0.95513 0.99023 1.21255 1.00875 1.01131 0.91702 1.19334 0.97616 0.94785 0.94404 1.21054 1.07268 0.91553 0.95882 1.23169 0.93594 1.00138 1.04024 1.23081 0.96527 0.96057 1.03567 1.20960 0.99490 0.95746 0.97674 0.92268 0.99746 0.99683 0.75438 0.85562 0.85273 0.85429 0.83818 0.84135 0.87429 0.87921 0.87404 0.87099 0.88372 0.86156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.91 13.29 21.45 0.28 -56.63 16 2 C 0.00 0.08 5.46 84.66 0.46 0.55 16 3 Si 0.99 42.50 29.54 68.60 2.03 44.53 16 4 H -0.25 -9.95 7.11 99.48 0.71 -9.24 16 5 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 6 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 7 C -0.55 -30.40 9.28 25.60 0.24 -30.16 16 8 H 0.09 4.20 7.60 -2.91 -0.02 4.18 16 9 C 0.27 14.87 5.43 85.63 0.46 15.33 16 10 N -0.71 -30.18 5.55 -466.79 -2.59 -32.77 16 11 C 0.50 20.19 7.82 87.66 0.69 20.88 16 12 O -0.60 -30.83 16.03 -3.04 -0.05 -30.88 16 13 C -0.09 -2.46 5.83 29.10 0.17 -2.29 16 14 C -0.07 -2.11 4.37 -19.87 -0.09 -2.20 16 15 C -0.13 -3.55 9.70 22.27 0.22 -3.33 16 16 C -0.12 -2.92 10.05 22.27 0.22 -2.70 16 17 C -0.13 -3.09 9.30 22.27 0.21 -2.89 16 18 C -0.06 -1.58 5.61 -19.87 -0.11 -1.69 16 19 C -0.14 -2.89 6.04 -11.54 -0.07 -2.96 16 20 C -0.17 -2.76 9.86 30.59 0.30 -2.46 16 21 C -0.16 -2.36 10.16 30.60 0.31 -2.05 16 22 C -0.12 -3.47 9.39 22.27 0.21 -3.26 16 23 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 24 H -0.02 -0.97 8.14 -2.38 -0.02 -0.99 16 25 H -0.01 -0.93 8.14 -2.39 -0.02 -0.95 16 26 H 0.41 14.10 8.32 -92.71 -0.77 13.33 16 27 H 0.13 2.70 8.08 -2.39 -0.02 2.68 16 28 H 0.13 2.70 8.08 -2.39 -0.02 2.68 16 29 H 0.13 3.14 8.06 -2.91 -0.02 3.12 16 30 H 0.14 2.63 8.06 -2.91 -0.02 2.61 16 31 H 0.14 2.54 6.02 -2.91 -0.02 2.52 16 32 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 33 H 0.10 1.53 6.18 -2.38 -0.01 1.51 16 34 H 0.11 1.47 8.14 -2.38 -0.02 1.45 16 35 H 0.11 1.35 8.14 -2.38 -0.02 1.33 16 36 H 0.10 1.44 8.14 -2.39 -0.02 1.43 16 37 H 0.12 3.25 8.06 -2.91 -0.02 3.23 16 Total: -1.00 -74.81 319.65 3.19 -71.62 By element: Atomic # 1 Polarization: 23.06 SS G_CDS: 0.30 Total: 23.36 kcal Atomic # 6 Polarization: -22.45 SS G_CDS: 3.22 Total: -19.23 kcal Atomic # 7 Polarization: -87.10 SS G_CDS: -2.30 Total: -89.40 kcal Atomic # 8 Polarization: -30.83 SS G_CDS: -0.05 Total: -30.88 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.53 kcal Total: -74.81 3.19 -71.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412285427.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.539 kcal (2) G-P(sol) polarization free energy of solvation -74.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds