Wall clock time and date at job start Sun Mar 29 2020 23:51:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86792 * 120.00026 * 2 1 4 4 H 1.48505 * 109.47187 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.47300 * 299.99591 * 3 2 1 6 6 H 1.48497 * 109.47204 * 59.99666 * 3 2 1 7 7 C 1.37880 * 119.99858 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00017 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99909 * 0.02562 * 7 2 1 10 10 N 1.46503 * 109.46842 * 179.97438 * 9 7 2 11 11 C 1.34785 * 119.99729 * 179.97438 * 10 9 7 12 12 O 1.21273 * 120.00214 * 5.07267 * 11 10 9 13 13 C 1.50697 * 119.99674 * 185.07598 * 11 10 9 14 14 H 1.09006 * 109.47407 * 325.34906 * 13 11 10 15 15 C 1.50697 * 109.47712 * 85.35115 * 13 11 10 16 16 C 1.38231 * 120.00121 * 240.00163 * 15 13 11 17 17 C 1.38240 * 120.00342 * 180.02562 * 16 15 13 18 18 C 1.38235 * 119.99701 * 359.95602 * 17 16 15 19 19 C 1.38241 * 119.99987 * 0.27942 * 18 17 16 20 20 C 1.38232 * 119.99798 * 60.01716 * 15 13 11 21 21 C 1.53002 * 109.46929 * 205.35032 * 13 11 10 22 22 C 1.53004 * 117.49700 * 134.12501 * 21 13 11 23 23 C 1.52994 * 59.99968 * 252.51156 * 22 21 13 24 24 H 0.96995 * 120.00194 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.47647 * 59.99398 * 9 7 2 26 26 H 1.09008 * 109.47067 * 299.99299 * 9 7 2 27 27 H 0.96996 * 120.00062 * 359.97438 * 10 9 7 28 28 H 1.08006 * 120.00074 * 359.97438 * 16 15 13 29 29 H 1.07994 * 120.00539 * 179.97438 * 17 16 15 30 30 H 1.07992 * 120.00199 * 179.97438 * 18 17 16 31 31 H 1.07999 * 119.99880 * 179.72452 * 19 18 17 32 32 H 1.07998 * 120.00378 * 0.02562 * 20 15 13 33 33 H 1.08995 * 115.55041 * 279.83773 * 21 13 11 34 34 H 1.09000 * 117.50039 * 0.02562 * 22 21 13 35 35 H 1.09009 * 117.49745 * 145.02264 * 22 21 13 36 36 H 1.09004 * 117.50004 * 252.50714 * 23 22 21 37 37 H 1.09001 * 117.51844 * 107.48749 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 1.7537 -4.8834 0.0011 12 8 0.5652 -5.1064 -0.0913 13 6 2.7282 -6.0271 0.1165 14 1 3.6527 -5.7703 -0.4007 15 6 3.0228 -6.2913 1.5706 16 6 4.3175 -6.1875 2.0435 17 6 4.5879 -6.4304 3.3772 18 6 3.5633 -6.7763 4.2383 19 6 2.2692 -6.8848 3.7644 20 6 1.9982 -6.6378 2.4315 21 6 2.1208 -7.2805 -0.5167 22 6 3.0105 -8.1011 -1.4527 23 6 1.8692 -7.2586 -2.0257 24 1 -0.4850 0.8400 -0.0004 25 1 0.6245 -2.5571 -0.8896 26 1 0.6240 -2.5567 0.8904 27 1 3.1566 -3.4354 0.0002 28 1 5.1181 -5.9174 1.3707 29 1 5.5995 -6.3497 3.7466 30 1 3.7745 -6.9665 5.2801 31 1 1.4694 -7.1594 4.4362 32 1 0.9867 -6.7196 2.0619 33 1 1.4081 -7.8228 0.1045 34 1 4.0286 -7.7482 -1.6171 35 1 2.8833 -9.1837 -1.4473 36 1 0.9911 -7.7868 -2.3973 37 1 2.1359 -6.3510 -2.5673 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427608360.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:51:13 Heat of formation + Delta-G solvation = -0.696634 kcal Electronic energy + Delta-G solvation = -18788.390480 eV Core-core repulsion = 15916.735601 eV Total energy + Delta-G solvation = -2871.654879 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.00823 -38.29406 -36.76388 -34.12420 -32.59712 -32.03778 -30.80060 -28.11674 -26.62193 -22.91271 -22.67527 -22.22207 -21.73657 -20.64451 -19.25836 -17.18912 -16.92495 -15.79740 -15.55824 -15.32276 -14.77955 -14.51842 -14.35474 -14.06766 -13.56328 -13.22215 -12.89490 -12.67189 -12.40843 -11.95203 -11.68406 -11.53922 -11.39817 -11.06964 -10.97666 -10.88104 -10.82053 -10.30148 -10.24195 -10.09881 -9.36785 -9.12674 -8.81388 -8.72439 -8.45729 -7.84659 -6.15788 -4.22320 1.41244 1.50570 3.23861 3.30872 3.34005 3.37088 3.72228 3.92908 4.23172 4.40075 4.73493 4.86439 4.98763 5.06668 5.08085 5.19496 5.20501 5.28717 5.38086 5.53817 5.60339 5.65272 5.70583 5.81535 6.01286 6.08785 6.15205 6.19853 6.33915 6.53407 6.60246 6.71536 7.08388 7.32684 7.46687 7.53729 7.68507 7.98433 8.65468 8.79808 9.12457 9.44341 10.94563 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.017995 B = 0.005557 C = 0.004755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.614374 B = 5037.056241 C = 5887.118242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.063 3.937 3 Si 0.903 3.097 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.541 4.541 8 H 0.063 0.937 9 C 0.250 3.750 10 N -0.711 5.711 11 C 0.510 3.490 12 O -0.547 6.547 13 C -0.040 4.040 14 H 0.092 0.908 15 C -0.063 4.063 16 C -0.112 4.112 17 C -0.121 4.121 18 C -0.124 4.124 19 C -0.119 4.119 20 C -0.103 4.103 21 C -0.122 4.122 22 C -0.181 4.181 23 C -0.168 4.168 24 H 0.265 0.735 25 H 0.027 0.973 26 H 0.025 0.975 27 H 0.389 0.611 28 H 0.122 0.878 29 H 0.120 0.880 30 H 0.118 0.882 31 H 0.120 0.880 32 H 0.127 0.873 33 H 0.109 0.891 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.282 -15.028 3.199 17.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.730 3.270 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.580 4.580 8 H 0.081 0.919 9 C 0.130 3.870 10 N -0.359 5.359 11 C 0.294 3.706 12 O -0.425 6.425 13 C -0.062 4.062 14 H 0.110 0.890 15 C -0.064 4.064 16 C -0.130 4.130 17 C -0.140 4.140 18 C -0.142 4.142 19 C -0.137 4.137 20 C -0.121 4.121 21 C -0.141 4.141 22 C -0.218 4.218 23 C -0.205 4.205 24 H 0.075 0.925 25 H 0.045 0.955 26 H 0.043 0.957 27 H 0.222 0.778 28 H 0.140 0.860 29 H 0.138 0.862 30 H 0.136 0.864 31 H 0.138 0.862 32 H 0.145 0.855 33 H 0.127 0.873 34 H 0.111 0.889 35 H 0.111 0.889 36 H 0.113 0.887 37 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 8.242 -15.015 3.143 17.415 hybrid contribution 0.846 1.138 0.060 1.420 sum 9.088 -13.877 3.203 16.895 Atomic orbital electron populations 1.69983 1.06106 1.27158 1.49093 1.24950 0.94903 0.99438 0.94732 0.86373 0.79852 0.83009 0.77755 1.19636 1.20782 1.20791 1.21266 0.93281 0.90469 1.52954 0.91898 1.19095 0.88303 0.81984 0.97641 1.46467 1.11026 1.06098 1.72272 1.20129 0.89081 0.83920 0.77493 1.90639 1.16855 1.84683 1.50369 1.19930 0.99013 0.93868 0.93368 0.88999 1.19406 0.93646 0.99540 0.93797 1.21028 0.95806 1.00268 0.95871 1.21063 0.99081 1.00262 0.93544 1.21121 0.93159 1.00488 0.99479 1.21132 0.96751 1.00328 0.95516 1.21148 0.99436 0.98140 0.93373 1.21890 1.02186 0.97090 0.92896 1.23050 0.96054 0.98070 1.04676 1.22875 0.99737 1.02012 0.95903 0.92524 0.95500 0.95690 0.77845 0.86043 0.86183 0.86358 0.86155 0.85517 0.87301 0.88923 0.88911 0.88712 0.88854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.34 13.29 55.43 0.74 -25.60 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 21.03 29.54 -169.99 -5.02 16.01 16 4 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 5 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.54 -14.88 9.28 -34.44 -0.32 -15.20 16 8 H 0.06 1.63 7.60 -52.49 -0.40 1.23 16 9 C 0.25 6.74 5.43 -5.19 -0.03 6.71 16 10 N -0.71 -15.34 5.55 -61.47 -0.34 -15.68 16 11 C 0.51 10.30 6.34 -10.98 -0.07 10.23 16 12 O -0.55 -13.05 16.25 5.56 0.09 -12.96 16 13 C -0.04 -0.61 2.47 -92.93 -0.23 -0.84 16 14 H 0.09 1.20 7.68 -51.93 -0.40 0.80 16 15 C -0.06 -0.92 4.77 -104.63 -0.50 -1.42 16 16 C -0.11 -1.41 9.67 -39.58 -0.38 -1.79 16 17 C -0.12 -1.41 10.05 -39.58 -0.40 -1.81 16 18 C -0.12 -1.46 10.05 -39.58 -0.40 -1.86 16 19 C -0.12 -1.54 10.05 -39.58 -0.40 -1.94 16 20 C -0.10 -1.54 8.67 -39.58 -0.34 -1.88 16 21 C -0.12 -1.70 4.35 -90.62 -0.39 -2.10 16 22 C -0.18 -2.02 10.18 -26.73 -0.27 -2.29 16 23 C -0.17 -2.25 9.98 -26.73 -0.27 -2.52 16 24 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 25 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.03 0.75 8.14 -51.92 -0.42 0.32 16 27 H 0.39 7.33 8.33 -40.82 -0.34 6.99 16 28 H 0.12 1.27 7.95 -52.48 -0.42 0.86 16 29 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 30 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 31 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 32 H 0.13 2.02 7.80 -52.49 -0.41 1.61 16 33 H 0.11 1.56 7.42 -51.93 -0.39 1.18 16 34 H 0.09 0.93 8.08 -51.93 -0.42 0.51 16 35 H 0.09 0.90 8.14 -51.92 -0.42 0.48 16 36 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 LS Contribution 320.73 15.07 4.83 4.83 Total: -1.00 -32.02 320.73 -9.08 -41.11 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: -5.29 Total: 7.32 kcal Atomic # 6 Polarization: -10.93 SS G_CDS: -4.10 Total: -15.03 kcal Atomic # 7 Polarization: -41.68 SS G_CDS: 0.40 Total: -41.28 kcal Atomic # 8 Polarization: -13.05 SS G_CDS: 0.09 Total: -12.96 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -32.02 -9.08 -41.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427608360.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.410 kcal (2) G-P(sol) polarization free energy of solvation -32.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds