Wall clock time and date at job start Sun Mar 29 2020 23:51:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86792 * 120.00026 * 2 1 4 4 H 1.48505 * 109.47187 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.47300 * 299.99591 * 3 2 1 6 6 H 1.48497 * 109.47204 * 59.99666 * 3 2 1 7 7 C 1.37880 * 119.99858 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00017 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99909 * 0.02562 * 7 2 1 10 10 N 1.46503 * 109.46842 * 179.97438 * 9 7 2 11 11 C 1.34785 * 119.99729 * 179.97438 * 10 9 7 12 12 O 1.21273 * 120.00214 * 5.07267 * 11 10 9 13 13 C 1.50697 * 119.99674 * 185.07598 * 11 10 9 14 14 H 1.09006 * 109.47407 * 325.34906 * 13 11 10 15 15 C 1.50697 * 109.47712 * 85.35115 * 13 11 10 16 16 C 1.38231 * 120.00121 * 240.00163 * 15 13 11 17 17 C 1.38240 * 120.00342 * 180.02562 * 16 15 13 18 18 C 1.38235 * 119.99701 * 359.95602 * 17 16 15 19 19 C 1.38241 * 119.99987 * 0.27942 * 18 17 16 20 20 C 1.38232 * 119.99798 * 60.01716 * 15 13 11 21 21 C 1.53002 * 109.46929 * 205.35032 * 13 11 10 22 22 C 1.53004 * 117.49700 * 134.12501 * 21 13 11 23 23 C 1.52994 * 59.99968 * 252.51156 * 22 21 13 24 24 H 0.96995 * 120.00194 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.47647 * 59.99398 * 9 7 2 26 26 H 1.09008 * 109.47067 * 299.99299 * 9 7 2 27 27 H 0.96996 * 120.00062 * 359.97438 * 10 9 7 28 28 H 1.08006 * 120.00074 * 359.97438 * 16 15 13 29 29 H 1.07994 * 120.00539 * 179.97438 * 17 16 15 30 30 H 1.07992 * 120.00199 * 179.97438 * 18 17 16 31 31 H 1.07999 * 119.99880 * 179.72452 * 19 18 17 32 32 H 1.07998 * 120.00378 * 0.02562 * 20 15 13 33 33 H 1.08995 * 115.55041 * 279.83773 * 21 13 11 34 34 H 1.09000 * 117.50039 * 0.02562 * 22 21 13 35 35 H 1.09009 * 117.49745 * 145.02264 * 22 21 13 36 36 H 1.09004 * 117.50004 * 252.50714 * 23 22 21 37 37 H 1.09001 * 117.51844 * 107.48749 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 1.7537 -4.8834 0.0011 12 8 0.5652 -5.1064 -0.0913 13 6 2.7282 -6.0271 0.1165 14 1 3.6527 -5.7703 -0.4007 15 6 3.0228 -6.2913 1.5706 16 6 4.3175 -6.1875 2.0435 17 6 4.5879 -6.4304 3.3772 18 6 3.5633 -6.7763 4.2383 19 6 2.2692 -6.8848 3.7644 20 6 1.9982 -6.6378 2.4315 21 6 2.1208 -7.2805 -0.5167 22 6 3.0105 -8.1011 -1.4527 23 6 1.8692 -7.2586 -2.0257 24 1 -0.4850 0.8400 -0.0004 25 1 0.6245 -2.5571 -0.8896 26 1 0.6240 -2.5567 0.8904 27 1 3.1566 -3.4354 0.0002 28 1 5.1181 -5.9174 1.3707 29 1 5.5995 -6.3497 3.7466 30 1 3.7745 -6.9665 5.2801 31 1 1.4694 -7.1594 4.4362 32 1 0.9867 -6.7196 2.0619 33 1 1.4081 -7.8228 0.1045 34 1 4.0286 -7.7482 -1.6171 35 1 2.8833 -9.1837 -1.4473 36 1 0.9911 -7.7868 -2.3973 37 1 2.1359 -6.3510 -2.5673 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427608360.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:51:12 Heat of formation + Delta-G solvation = -20.255975 kcal Electronic energy + Delta-G solvation = -18789.238637 eV Core-core repulsion = 15916.735601 eV Total energy + Delta-G solvation = -2872.503036 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.33382 -39.58914 -37.95168 -36.11069 -34.41293 -33.38378 -31.77250 -29.77791 -28.21452 -24.87362 -23.67169 -23.25682 -22.74189 -22.16192 -20.75500 -18.91892 -18.01023 -17.56382 -17.11855 -16.64746 -16.21092 -15.86473 -15.75659 -15.44829 -14.85445 -14.51565 -14.25208 -14.07145 -13.99215 -13.52249 -13.38121 -12.95651 -12.76179 -12.52525 -12.39252 -12.23623 -12.06108 -11.85375 -11.47506 -11.37653 -11.20167 -10.82901 -10.59366 -9.83329 -9.79747 -9.58906 -8.30735 -6.47550 0.40143 0.52018 1.41828 1.43250 1.56780 1.75812 2.28557 2.47376 2.90083 3.03107 3.04288 3.59735 3.77401 3.89813 4.06709 4.13903 4.16485 4.27956 4.31042 4.35200 4.54804 4.66173 4.77779 4.79472 5.01423 5.06924 5.12655 5.17969 5.21095 5.23254 5.27088 5.47593 5.57880 5.63478 5.65513 5.71027 5.83420 6.12907 6.63495 6.89855 7.21747 7.47313 8.81888 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.017995 B = 0.005557 C = 0.004755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.614374 B = 5037.056241 C = 5887.118242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.003 3.997 3 Si 0.985 3.015 4 H -0.252 1.252 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.555 4.555 8 H 0.083 0.917 9 C 0.269 3.731 10 N -0.708 5.708 11 C 0.507 3.493 12 O -0.591 6.591 13 C -0.023 4.023 14 H 0.120 0.880 15 C -0.082 4.082 16 C -0.113 4.113 17 C -0.120 4.120 18 C -0.123 4.123 19 C -0.130 4.130 20 C -0.130 4.130 21 C -0.145 4.145 22 C -0.142 4.142 23 C -0.187 4.187 24 H 0.269 0.731 25 H -0.014 1.014 26 H -0.017 1.017 27 H 0.406 0.594 28 H 0.148 0.852 29 H 0.153 0.847 30 H 0.148 0.852 31 H 0.132 0.868 32 H 0.099 0.901 33 H 0.095 0.905 34 H 0.113 0.887 35 H 0.112 0.888 36 H 0.094 0.906 37 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.160 -15.249 3.835 20.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.808 3.192 4 H -0.176 1.176 5 H -0.203 1.203 6 H -0.204 1.204 7 C -0.592 4.592 8 H 0.101 0.899 9 C 0.146 3.854 10 N -0.357 5.357 11 C 0.294 3.706 12 O -0.472 6.472 13 C -0.044 4.044 14 H 0.138 0.862 15 C -0.082 4.082 16 C -0.131 4.131 17 C -0.137 4.137 18 C -0.141 4.141 19 C -0.148 4.148 20 C -0.148 4.148 21 C -0.164 4.164 22 C -0.179 4.179 23 C -0.224 4.224 24 H 0.078 0.922 25 H 0.004 0.996 26 H 0.001 0.999 27 H 0.241 0.759 28 H 0.166 0.834 29 H 0.171 0.829 30 H 0.165 0.835 31 H 0.150 0.850 32 H 0.117 0.883 33 H 0.113 0.887 34 H 0.132 0.868 35 H 0.131 0.869 36 H 0.113 0.887 37 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 12.163 -15.273 3.779 19.886 hybrid contribution -0.425 1.125 -0.090 1.206 sum 11.737 -14.148 3.690 18.749 Atomic orbital electron populations 1.70147 1.08333 1.28524 1.50058 1.26084 0.95777 1.03960 0.93797 0.85103 0.79115 0.77214 0.77744 1.17552 1.20333 1.20405 1.21637 0.94264 0.90541 1.52794 0.89870 1.18510 0.88655 0.84425 0.93802 1.46228 1.11015 1.05589 1.72855 1.21166 0.89544 0.84522 0.75356 1.90609 1.19414 1.85356 1.51845 1.19829 0.98167 0.91609 0.94821 0.86189 1.19423 0.94683 1.01063 0.93048 1.21351 0.95299 0.99425 0.96986 1.21506 1.00582 0.98659 0.93000 1.21516 0.92376 0.99135 1.01074 1.21357 0.98262 1.00392 0.94830 1.21128 0.98621 1.00243 0.94855 1.21882 1.03910 0.97615 0.92960 1.23158 0.95920 0.98678 1.00104 1.22910 1.01508 1.02607 0.95392 0.92236 0.99558 0.99884 0.75903 0.83391 0.82903 0.83472 0.84978 0.88282 0.88660 0.86842 0.86922 0.88744 0.90009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.14 13.29 21.45 0.28 -56.86 16 2 C 0.00 0.18 5.46 84.66 0.46 0.64 16 3 Si 0.99 42.78 29.54 68.60 2.03 44.80 16 4 H -0.25 -10.08 7.11 99.48 0.71 -9.37 16 5 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 6 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 7 C -0.55 -30.81 9.28 25.60 0.24 -30.57 16 8 H 0.08 4.18 7.60 -2.91 -0.02 4.16 16 9 C 0.27 15.24 5.43 85.63 0.47 15.71 16 10 N -0.71 -31.37 5.55 -466.78 -2.59 -33.96 16 11 C 0.51 21.31 6.34 87.65 0.56 21.87 16 12 O -0.59 -30.26 16.25 -3.01 -0.05 -30.31 16 13 C -0.02 -0.69 2.47 -12.29 -0.03 -0.72 16 14 H 0.12 2.84 7.68 -2.38 -0.02 2.82 16 15 C -0.08 -2.31 4.77 -19.87 -0.09 -2.41 16 16 C -0.11 -2.50 9.67 22.27 0.22 -2.29 16 17 C -0.12 -2.33 10.05 22.27 0.22 -2.11 16 18 C -0.12 -2.55 10.05 22.27 0.22 -2.32 16 19 C -0.13 -3.31 10.05 22.27 0.22 -3.09 16 20 C -0.13 -4.01 8.67 22.27 0.19 -3.82 16 21 C -0.14 -4.04 4.35 -10.79 -0.05 -4.08 16 22 C -0.14 -2.81 10.18 30.59 0.31 -2.50 16 23 C -0.19 -4.99 9.98 30.59 0.31 -4.69 16 24 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 25 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 26 H -0.02 -1.07 8.14 -2.38 -0.02 -1.09 16 27 H 0.41 15.05 8.33 -92.71 -0.77 14.27 16 28 H 0.15 2.43 7.95 -2.91 -0.02 2.41 16 29 H 0.15 1.98 8.06 -2.91 -0.02 1.95 16 30 H 0.15 2.15 8.06 -2.91 -0.02 2.13 16 31 H 0.13 2.87 8.06 -2.91 -0.02 2.84 16 32 H 0.10 3.49 7.80 -2.91 -0.02 3.47 16 33 H 0.10 2.88 7.42 -2.39 -0.02 2.86 16 34 H 0.11 1.82 8.08 -2.39 -0.02 1.80 16 35 H 0.11 1.83 8.14 -2.38 -0.02 1.81 16 36 H 0.09 2.46 8.14 -2.38 -0.02 2.44 16 37 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 Total: -1.00 -73.69 320.73 3.21 -70.48 By element: Atomic # 1 Polarization: 25.93 SS G_CDS: 0.29 Total: 26.22 kcal Atomic # 6 Polarization: -23.61 SS G_CDS: 3.25 Total: -20.37 kcal Atomic # 7 Polarization: -88.51 SS G_CDS: -2.30 Total: -90.82 kcal Atomic # 8 Polarization: -30.26 SS G_CDS: -0.05 Total: -30.31 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.80 kcal Total: -73.69 3.21 -70.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427608360.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.223 kcal (2) G-P(sol) polarization free energy of solvation -73.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds