Wall clock time and date at job start Mon Mar 30 2020 00:35:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 112.78036 * 2 1 4 4 C 1.53766 * 113.46264 * 229.10317 * 2 1 3 5 5 C 1.53496 * 83.25708 * 271.50358 * 4 2 1 6 6 N 1.47066 * 113.46937 * 130.78960 * 2 1 3 7 7 C 1.34779 * 136.05336 * 267.69688 * 6 2 1 8 8 O 1.21590 * 119.99876 * 354.03072 * 7 6 2 9 9 C 1.47637 * 119.99906 * 174.03223 * 7 6 2 10 10 C 1.40019 * 119.89240 * 173.49801 * 9 7 6 11 11 C 1.36320 * 120.10370 * 179.74415 * 10 9 7 12 12 C 1.40887 * 119.89219 * 0.26013 * 11 10 9 13 13 C 1.41104 * 120.10471 * 180.02562 * 12 11 10 14 14 H 1.08004 * 120.00261 * 208.99467 * 13 12 11 15 15 C 1.40231 * 119.99945 * 28.99593 * 13 12 11 16 16 N 1.30645 * 119.99823 * 10.19540 * 15 13 12 17 17 Si 1.86801 * 120.00026 * 190.20372 * 15 13 12 18 18 H 1.48502 * 109.47167 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47159 * 119.99816 * 17 15 13 20 20 H 1.48502 * 109.46683 * 239.99614 * 17 15 13 21 21 C 1.40894 * 119.79613 * 359.97438 * 12 11 10 22 22 C 1.36315 * 119.88666 * 0.02562 * 21 12 11 23 23 H 1.09000 * 109.46886 * 308.72210 * 1 2 3 24 24 H 1.09006 * 109.46898 * 68.72058 * 1 2 3 25 25 H 1.08999 * 109.47013 * 188.72041 * 1 2 3 26 26 H 1.09005 * 109.46844 * 171.28067 * 3 2 1 27 27 H 1.09003 * 109.47538 * 291.27813 * 3 2 1 28 28 H 1.09001 * 109.46645 * 51.28149 * 3 2 1 29 29 H 1.09001 * 114.39102 * 157.94336 * 4 2 1 30 30 H 1.08997 * 114.26554 * 25.05679 * 4 2 1 31 31 H 1.08997 * 113.46994 * 218.98787 * 5 4 2 32 32 H 1.09003 * 113.47099 * 88.54158 * 5 4 2 33 33 H 1.07993 * 119.94976 * 0.02562 * 10 9 7 34 34 H 1.07996 * 120.05128 * 180.27202 * 11 10 9 35 35 H 0.97007 * 119.99846 * 179.97438 * 16 15 13 36 36 H 1.08000 * 120.05510 * 180.02562 * 21 12 11 37 37 H 1.08001 * 119.94353 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1224 1.4106 0.0000 4 6 2.1422 -0.9235 -1.0662 5 6 2.0338 -1.9775 0.0444 6 7 2.1157 -0.8813 1.0213 7 6 2.5367 -0.7454 2.2945 8 8 2.5652 0.3549 2.8112 9 6 2.9631 -1.9325 3.0616 10 6 3.5274 -1.7758 4.3335 11 6 3.9178 -2.8693 5.0477 12 6 3.7578 -4.1582 4.5020 13 6 4.1599 -5.2932 5.2376 14 1 4.4845 -6.1844 4.7211 15 6 4.1380 -5.2640 6.6395 16 7 3.5629 -4.2706 7.2632 17 14 4.9314 -6.6455 7.6149 18 1 5.5096 -7.6434 6.6794 19 1 6.0077 -6.0901 8.4741 20 1 3.9070 -7.3016 8.4667 21 6 3.1940 -4.3106 3.2198 22 6 2.8066 -3.2112 2.5131 23 1 -0.3633 0.6429 0.8018 24 1 -0.3633 0.3730 -0.9577 25 1 -0.3633 -1.0158 0.1558 26 1 3.1997 1.3523 0.1558 27 1 1.9193 1.8901 -0.9576 28 1 1.6704 1.9945 0.8018 29 1 3.1654 -0.6722 -1.3455 30 1 1.4948 -1.1090 -1.9232 31 1 2.8850 -2.6572 0.0824 32 1 1.0766 -2.4988 0.0562 33 1 3.6493 -0.7874 4.7511 34 1 4.3489 -2.7476 6.0304 35 1 3.5475 -4.2506 8.2330 36 1 3.0691 -5.2968 2.7975 37 1 2.3740 -3.3270 1.5303 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000559710943.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:35:42 Heat of formation + Delta-G solvation = 16.364778 kcal Electronic energy + Delta-G solvation = -18994.369606 eV Core-core repulsion = 16123.454565 eV Total energy + Delta-G solvation = -2870.915041 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.45501 -37.89661 -36.63906 -33.83482 -31.67274 -30.00999 -29.53518 -28.79015 -27.38971 -25.75258 -23.17519 -22.31267 -20.99689 -20.19496 -17.68258 -17.49878 -16.25393 -15.55848 -15.50577 -15.32848 -14.31322 -13.96768 -13.59904 -13.38384 -13.11010 -12.91892 -12.37502 -12.31453 -12.25218 -11.97356 -11.79659 -11.55973 -11.48593 -11.34070 -11.23366 -11.09864 -10.92854 -10.58729 -10.25213 -9.84582 -9.44333 -9.37396 -8.85576 -8.23515 -7.66553 -7.47458 -6.91997 -4.58535 2.25504 2.93412 2.98015 3.03035 3.05132 3.32229 3.78222 3.89648 4.38421 4.59778 4.95955 5.05051 5.13548 5.28283 5.50345 5.55672 5.59911 5.64387 5.72736 5.82475 5.90125 5.96690 6.02808 6.10690 6.30353 6.34575 6.41791 6.60746 6.85565 6.89239 7.09951 7.15569 7.49176 7.64338 7.88468 7.93346 8.10020 8.39152 8.48365 8.67530 8.78916 9.09609 9.99334 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.045787 B = 0.004517 C = 0.004273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.381713 B = 6196.697666 C = 6551.078618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.151 3.849 3 C -0.141 4.141 4 C -0.151 4.151 5 C 0.098 3.902 6 N -0.643 5.643 7 C 0.599 3.401 8 O -0.567 6.567 9 C -0.272 4.272 10 C -0.040 4.040 11 C -0.175 4.175 12 C 0.128 3.872 13 C -0.447 4.447 14 H 0.083 0.917 15 C 0.071 3.929 16 N -0.781 5.781 17 Si 0.916 3.084 18 H -0.259 1.259 19 H -0.270 1.270 20 H -0.272 1.272 21 C -0.233 4.233 22 C -0.063 4.063 23 H 0.061 0.939 24 H 0.067 0.933 25 H 0.062 0.938 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.092 0.908 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.100 0.900 34 H 0.124 0.876 35 H 0.285 0.715 36 H 0.096 0.904 37 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.902 2.164 -11.630 12.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.066 3.934 3 C -0.199 4.199 4 C -0.188 4.188 5 C -0.025 4.025 6 N -0.379 5.379 7 C 0.397 3.603 8 O -0.448 6.448 9 C -0.276 4.276 10 C -0.060 4.060 11 C -0.194 4.194 12 C 0.125 3.875 13 C -0.476 4.476 14 H 0.101 0.899 15 C -0.149 4.149 16 N -0.405 5.405 17 Si 0.740 3.260 18 H -0.182 1.182 19 H -0.195 1.195 20 H -0.197 1.197 21 C -0.253 4.253 22 C -0.082 4.082 23 H 0.080 0.920 24 H 0.086 0.914 25 H 0.081 0.919 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.081 0.919 29 H 0.110 0.890 30 H 0.101 0.899 31 H 0.102 0.898 32 H 0.097 0.903 33 H 0.118 0.882 34 H 0.141 0.859 35 H 0.096 0.904 36 H 0.115 0.885 37 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -2.860 2.854 -10.853 11.581 hybrid contribution 0.130 -0.710 0.639 0.964 sum -2.730 2.144 -10.214 10.787 Atomic orbital electron populations 1.21949 0.93729 1.02694 1.02222 1.21883 0.93477 0.92557 0.85500 1.21843 1.01550 0.95069 1.01440 1.23604 1.02062 0.96979 0.96195 1.22949 1.01932 0.92173 0.85483 1.49728 1.63911 1.12493 1.11810 1.18247 0.75218 0.89200 0.77603 1.90639 1.57516 1.28200 1.68494 1.18930 1.19423 0.91168 0.98121 1.20519 0.95109 0.98002 0.92354 1.21085 1.05910 0.91377 1.01065 1.17826 0.85987 0.93081 0.90638 1.19833 1.37107 0.99696 0.90920 0.89877 1.26078 0.93070 0.97113 0.98599 1.69732 1.30526 1.29349 1.10858 0.86131 0.79551 0.80781 0.79576 1.18212 1.19490 1.19720 1.20741 1.09502 0.96523 0.98505 1.20855 0.97325 0.92380 0.97612 0.91975 0.91363 0.91924 0.92095 0.92152 0.91898 0.88962 0.89879 0.89840 0.90323 0.88227 0.85867 0.90392 0.88534 0.87961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 9.27 37.16 0.34 -1.40 16 2 C 0.15 2.07 1.61 -136.14 -0.22 1.85 16 3 C -0.14 -1.94 8.65 37.16 0.32 -1.62 16 4 C -0.15 -1.63 7.63 -26.08 -0.20 -1.83 16 5 C 0.10 1.31 5.73 -8.50 -0.05 1.26 16 6 N -0.64 -11.34 3.35 -170.94 -0.57 -11.91 16 7 C 0.60 13.51 7.93 -12.42 -0.10 13.41 16 8 O -0.57 -14.26 16.44 5.29 0.09 -14.17 16 9 C -0.27 -6.49 5.89 -104.73 -0.62 -7.11 16 10 C -0.04 -1.02 9.52 -39.60 -0.38 -1.40 16 11 C -0.18 -4.59 8.60 -39.27 -0.34 -4.93 16 12 C 0.13 3.33 5.55 -106.80 -0.59 2.73 16 13 C -0.45 -11.34 9.05 -37.75 -0.34 -11.68 16 14 H 0.08 2.00 7.87 -52.48 -0.41 1.58 16 15 C 0.07 1.71 5.26 -17.31 -0.09 1.62 16 16 N -0.78 -19.60 10.81 55.56 0.60 -19.00 16 17 Si 0.92 17.80 29.57 -169.99 -5.03 12.77 16 18 H -0.26 -4.94 7.11 56.52 0.40 -4.54 16 19 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 20 H -0.27 -5.22 7.11 56.52 0.40 -4.81 16 21 C -0.23 -5.51 9.73 -39.27 -0.38 -5.90 16 22 C -0.06 -1.39 9.07 -39.61 -0.36 -1.75 16 23 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 24 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.06 0.73 7.02 -51.93 -0.36 0.36 16 26 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.09 0.98 8.13 -51.93 -0.42 0.56 16 30 H 0.08 0.67 8.11 -51.93 -0.42 0.25 16 31 H 0.08 1.13 6.74 -51.93 -0.35 0.78 16 32 H 0.08 0.94 7.27 -51.93 -0.38 0.56 16 33 H 0.10 2.49 7.64 -52.49 -0.40 2.09 16 34 H 0.12 3.31 6.20 -52.49 -0.33 2.98 16 35 H 0.28 6.45 8.29 -40.82 -0.34 6.11 16 36 H 0.10 2.09 8.06 -52.49 -0.42 1.67 16 37 H 0.10 1.89 4.12 -52.49 -0.22 1.67 16 LS Contribution 305.15 15.07 4.60 4.60 Total: -1.00 -29.85 305.15 -8.27 -38.12 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -4.96 Total: 6.33 kcal Atomic # 6 Polarization: -13.74 SS G_CDS: -3.00 Total: -16.74 kcal Atomic # 7 Polarization: -30.94 SS G_CDS: 0.03 Total: -30.91 kcal Atomic # 8 Polarization: -14.26 SS G_CDS: 0.09 Total: -14.17 kcal Atomic # 14 Polarization: 17.80 SS G_CDS: -5.03 Total: 12.77 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -29.85 -8.27 -38.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000559710943.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.489 kcal (2) G-P(sol) polarization free energy of solvation -29.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.124 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds