Wall clock time and date at job start Mon Mar 30 2020 00:35:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 112.78036 * 2 1 4 4 C 1.53766 * 113.46264 * 229.10317 * 2 1 3 5 5 C 1.53496 * 83.25708 * 271.50358 * 4 2 1 6 6 N 1.47066 * 113.46937 * 130.78960 * 2 1 3 7 7 C 1.34779 * 136.05336 * 267.69688 * 6 2 1 8 8 O 1.21590 * 119.99876 * 354.03072 * 7 6 2 9 9 C 1.47637 * 119.99906 * 174.03223 * 7 6 2 10 10 C 1.40019 * 119.89240 * 173.49801 * 9 7 6 11 11 C 1.36320 * 120.10370 * 179.74415 * 10 9 7 12 12 C 1.40887 * 119.89219 * 0.26013 * 11 10 9 13 13 C 1.41104 * 120.10471 * 180.02562 * 12 11 10 14 14 H 1.08004 * 120.00261 * 208.99467 * 13 12 11 15 15 C 1.40231 * 119.99945 * 28.99593 * 13 12 11 16 16 N 1.30645 * 119.99823 * 10.19540 * 15 13 12 17 17 Si 1.86801 * 120.00026 * 190.20372 * 15 13 12 18 18 H 1.48502 * 109.47167 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47159 * 119.99816 * 17 15 13 20 20 H 1.48502 * 109.46683 * 239.99614 * 17 15 13 21 21 C 1.40894 * 119.79613 * 359.97438 * 12 11 10 22 22 C 1.36315 * 119.88666 * 0.02562 * 21 12 11 23 23 H 1.09000 * 109.46886 * 308.72210 * 1 2 3 24 24 H 1.09006 * 109.46898 * 68.72058 * 1 2 3 25 25 H 1.08999 * 109.47013 * 188.72041 * 1 2 3 26 26 H 1.09005 * 109.46844 * 171.28067 * 3 2 1 27 27 H 1.09003 * 109.47538 * 291.27813 * 3 2 1 28 28 H 1.09001 * 109.46645 * 51.28149 * 3 2 1 29 29 H 1.09001 * 114.39102 * 157.94336 * 4 2 1 30 30 H 1.08997 * 114.26554 * 25.05679 * 4 2 1 31 31 H 1.08997 * 113.46994 * 218.98787 * 5 4 2 32 32 H 1.09003 * 113.47099 * 88.54158 * 5 4 2 33 33 H 1.07993 * 119.94976 * 0.02562 * 10 9 7 34 34 H 1.07996 * 120.05128 * 180.27202 * 11 10 9 35 35 H 0.97007 * 119.99846 * 179.97438 * 16 15 13 36 36 H 1.08000 * 120.05510 * 180.02562 * 21 12 11 37 37 H 1.08001 * 119.94353 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1224 1.4106 0.0000 4 6 2.1422 -0.9235 -1.0662 5 6 2.0338 -1.9775 0.0444 6 7 2.1157 -0.8813 1.0213 7 6 2.5367 -0.7454 2.2945 8 8 2.5652 0.3549 2.8112 9 6 2.9631 -1.9325 3.0616 10 6 3.5274 -1.7758 4.3335 11 6 3.9178 -2.8693 5.0477 12 6 3.7578 -4.1582 4.5020 13 6 4.1599 -5.2932 5.2376 14 1 4.4845 -6.1844 4.7211 15 6 4.1380 -5.2640 6.6395 16 7 3.5629 -4.2706 7.2632 17 14 4.9314 -6.6455 7.6149 18 1 5.5096 -7.6434 6.6794 19 1 6.0077 -6.0901 8.4741 20 1 3.9070 -7.3016 8.4667 21 6 3.1940 -4.3106 3.2198 22 6 2.8066 -3.2112 2.5131 23 1 -0.3633 0.6429 0.8018 24 1 -0.3633 0.3730 -0.9577 25 1 -0.3633 -1.0158 0.1558 26 1 3.1997 1.3523 0.1558 27 1 1.9193 1.8901 -0.9576 28 1 1.6704 1.9945 0.8018 29 1 3.1654 -0.6722 -1.3455 30 1 1.4948 -1.1090 -1.9232 31 1 2.8850 -2.6572 0.0824 32 1 1.0766 -2.4988 0.0562 33 1 3.6493 -0.7874 4.7511 34 1 4.3489 -2.7476 6.0304 35 1 3.5475 -4.2506 8.2330 36 1 3.0691 -5.2968 2.7975 37 1 2.3740 -3.3270 1.5303 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000559710943.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:35:41 Heat of formation + Delta-G solvation = -0.806196 kcal Electronic energy + Delta-G solvation = -18995.114196 eV Core-core repulsion = 16123.454565 eV Total energy + Delta-G solvation = -2871.659630 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.73468 -39.62187 -38.40713 -35.67801 -33.03953 -31.83022 -31.21908 -30.17375 -28.38267 -27.55608 -24.36831 -23.89533 -22.75295 -21.84441 -19.36657 -19.15080 -17.75248 -17.10409 -16.96647 -16.67988 -15.78752 -15.49344 -15.15720 -15.06975 -14.56976 -14.46810 -14.06634 -13.66512 -13.52989 -13.26923 -13.19070 -13.00859 -12.84727 -12.70482 -12.63295 -12.52048 -12.35950 -12.10725 -11.76263 -11.40001 -11.20236 -11.06579 -10.54130 -9.69587 -9.56887 -9.33574 -8.73661 -6.51593 0.41459 1.11578 1.37886 1.41031 1.54922 1.98918 2.12518 2.18371 2.79338 3.37697 3.65046 3.87539 4.00846 4.06679 4.13356 4.28313 4.37271 4.49556 4.56669 4.69890 4.71995 4.86794 4.90713 4.93951 4.99912 5.02317 5.13380 5.13949 5.22716 5.25364 5.36515 5.48255 5.58460 5.76976 5.99212 6.03134 6.18719 6.55095 6.76449 6.85890 6.91443 7.42291 8.20818 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.045787 B = 0.004517 C = 0.004273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.381713 B = 6196.697666 C = 6551.078618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.136 3.864 3 C -0.139 4.139 4 C -0.121 4.121 5 C 0.085 3.915 6 N -0.651 5.651 7 C 0.591 3.409 8 O -0.610 6.610 9 C -0.285 4.285 10 C -0.057 4.057 11 C -0.194 4.194 12 C 0.100 3.900 13 C -0.475 4.475 14 H 0.092 0.908 15 C 0.029 3.971 16 N -0.817 5.817 17 Si 0.994 3.006 18 H -0.250 1.250 19 H -0.266 1.266 20 H -0.264 1.264 21 C -0.242 4.242 22 C -0.052 4.052 23 H 0.038 0.962 24 H 0.106 0.894 25 H 0.067 0.933 26 H 0.038 0.962 27 H 0.099 0.901 28 H 0.035 0.965 29 H 0.095 0.905 30 H 0.128 0.872 31 H 0.083 0.917 32 H 0.103 0.897 33 H 0.087 0.913 34 H 0.106 0.894 35 H 0.293 0.707 36 H 0.119 0.881 37 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.714 0.591 -14.466 14.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.053 3.947 3 C -0.197 4.197 4 C -0.159 4.159 5 C -0.037 4.037 6 N -0.385 5.385 7 C 0.388 3.612 8 O -0.495 6.495 9 C -0.289 4.289 10 C -0.076 4.076 11 C -0.214 4.214 12 C 0.097 3.903 13 C -0.503 4.503 14 H 0.110 0.890 15 C -0.187 4.187 16 N -0.441 5.441 17 Si 0.813 3.187 18 H -0.173 1.173 19 H -0.191 1.191 20 H -0.189 1.189 21 C -0.261 4.261 22 C -0.070 4.070 23 H 0.057 0.943 24 H 0.125 0.875 25 H 0.086 0.914 26 H 0.057 0.943 27 H 0.118 0.882 28 H 0.054 0.946 29 H 0.113 0.887 30 H 0.146 0.854 31 H 0.102 0.898 32 H 0.121 0.879 33 H 0.106 0.894 34 H 0.124 0.876 35 H 0.104 0.896 36 H 0.137 0.863 37 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -3.696 1.274 -13.762 14.306 hybrid contribution 0.325 -0.126 1.402 1.445 sum -3.371 1.148 -12.360 12.863 Atomic orbital electron populations 1.21953 0.91892 1.02748 1.03530 1.22403 0.94918 0.92434 0.84974 1.21836 0.99793 0.95521 1.02525 1.23533 1.02958 0.93429 0.95953 1.23359 1.03203 0.92238 0.84912 1.49878 1.62194 1.15883 1.10575 1.18059 0.75815 0.88008 0.79363 1.90599 1.59500 1.29266 1.70145 1.19272 1.18848 0.93026 0.97797 1.20574 0.96113 0.97263 0.93660 1.20997 1.07362 0.92257 1.00781 1.18194 0.86905 0.93087 0.92138 1.20156 1.38163 0.99896 0.92049 0.88964 1.27043 0.92859 0.99633 0.99210 1.69804 1.31365 1.31313 1.11654 0.84981 0.78494 0.77346 0.77868 1.17316 1.19055 1.18914 1.21032 1.09153 0.98083 0.97859 1.21201 0.95978 0.90901 0.98913 0.94288 0.87524 0.91422 0.94327 0.88248 0.94613 0.88682 0.85381 0.89845 0.87898 0.89429 0.87625 0.89628 0.86347 0.83869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.90 9.27 71.98 0.67 -2.24 16 2 C 0.14 3.36 1.61 0.50 0.00 3.36 16 3 C -0.14 -3.64 8.65 71.98 0.62 -3.01 16 4 C -0.12 -2.03 7.63 31.02 0.24 -1.80 16 5 C 0.08 1.94 5.73 83.18 0.48 2.42 16 6 N -0.65 -22.01 3.35 -812.99 -2.72 -24.73 16 7 C 0.59 27.14 7.93 86.72 0.69 27.83 16 8 O -0.61 -32.12 16.44 -4.00 -0.07 -32.19 16 9 C -0.29 -13.92 5.89 -19.93 -0.12 -14.04 16 10 C -0.06 -3.04 9.52 22.25 0.21 -2.83 16 11 C -0.19 -10.78 8.60 22.47 0.19 -10.59 16 12 C 0.10 5.33 5.55 -21.28 -0.12 5.21 16 13 C -0.47 -24.42 9.05 23.46 0.21 -24.20 16 14 H 0.09 4.41 7.87 -2.91 -0.02 4.39 16 15 C 0.03 1.42 5.26 85.35 0.45 1.87 16 16 N -0.82 -42.32 10.81 21.87 0.24 -42.08 16 17 Si 0.99 36.30 29.57 68.60 2.03 38.33 16 18 H -0.25 -8.71 7.11 99.48 0.71 -8.00 16 19 H -0.27 -9.46 7.11 99.48 0.71 -8.75 16 20 H -0.26 -9.28 7.11 99.48 0.71 -8.58 16 21 C -0.24 -11.35 9.73 22.47 0.22 -11.13 16 22 C -0.05 -2.24 9.07 22.25 0.20 -2.04 16 23 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 24 H 0.11 1.36 8.14 -2.38 -0.02 1.34 16 25 H 0.07 1.31 7.02 -2.39 -0.02 1.29 16 26 H 0.04 1.16 8.14 -2.38 -0.02 1.14 16 27 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.09 1.61 8.13 -2.39 -0.02 1.59 16 30 H 0.13 1.15 8.11 -2.39 -0.02 1.13 16 31 H 0.08 1.95 6.74 -2.39 -0.02 1.93 16 32 H 0.10 1.94 7.27 -2.39 -0.02 1.92 16 33 H 0.09 4.76 7.64 -2.91 -0.02 4.74 16 34 H 0.11 6.09 6.20 -2.91 -0.02 6.07 16 35 H 0.29 13.63 8.29 -92.70 -0.77 12.86 16 36 H 0.12 4.93 8.06 -2.91 -0.02 4.91 16 37 H 0.14 4.88 4.12 -2.91 -0.01 4.87 16 Total: -1.00 -69.74 305.15 4.49 -65.25 By element: Atomic # 1 Polarization: 25.55 SS G_CDS: 1.07 Total: 26.61 kcal Atomic # 6 Polarization: -35.13 SS G_CDS: 3.94 Total: -31.19 kcal Atomic # 7 Polarization: -64.33 SS G_CDS: -2.48 Total: -66.82 kcal Atomic # 8 Polarization: -32.12 SS G_CDS: -0.07 Total: -32.19 kcal Atomic # 14 Polarization: 36.30 SS G_CDS: 2.03 Total: 38.33 kcal Total: -69.74 4.49 -65.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000559710943.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.442 kcal (2) G-P(sol) polarization free energy of solvation -69.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds