Wall clock time and date at job start Mon Mar 30 2020 00:09:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38233 * 120.00021 * 2 1 4 4 C 1.38236 * 120.00069 * 180.28023 * 3 2 1 5 5 C 1.38239 * 120.00091 * 359.46318 * 4 3 2 6 6 C 1.50695 * 120.00307 * 180.28022 * 5 4 3 7 7 C 1.50698 * 112.85212 * 113.79558 * 6 5 4 8 8 O 1.21299 * 120.00177 * 123.23150 * 7 6 5 9 9 N 1.34777 * 120.00249 * 303.23589 * 7 6 5 10 10 C 1.37095 * 120.00437 * 184.81140 * 9 7 6 11 11 H 1.08004 * 119.99765 * 359.97438 * 10 9 7 12 12 C 1.38949 * 120.00230 * 179.97438 * 10 9 7 13 13 N 1.31413 * 119.99719 * 359.97438 * 12 10 9 14 14 Si 1.86802 * 120.00030 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47056 * 59.99846 * 14 12 10 16 16 H 1.48497 * 109.46981 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.46822 * 299.99799 * 14 12 10 18 18 C 1.53787 * 113.61354 * 342.59984 * 6 5 4 19 19 C 1.53961 * 87.01893 * 220.04773 * 18 6 5 20 20 C 1.53781 * 113.61395 * 244.99394 * 6 5 4 21 21 C 1.38237 * 119.99638 * 0.25914 * 5 4 3 22 22 C 1.38234 * 120.00044 * 179.72132 * 2 1 3 23 23 H 1.08996 * 109.47013 * 270.27681 * 1 2 3 24 24 H 1.08999 * 109.47087 * 30.28274 * 1 2 3 25 25 H 1.09009 * 109.46813 * 150.27709 * 1 2 3 26 26 H 1.08001 * 120.00121 * 0.02562 * 3 2 1 27 27 H 1.08000 * 120.00454 * 179.74434 * 4 3 2 28 28 H 0.97000 * 119.99447 * 4.80051 * 9 7 6 29 29 H 0.96997 * 119.99458 * 180.02562 * 13 12 10 30 30 H 1.08992 * 113.61218 * 334.57011 * 18 6 5 31 31 H 1.08994 * 113.61141 * 105.47345 * 18 6 5 32 32 H 1.08997 * 113.53490 * 270.81057 * 19 18 6 33 33 H 1.08998 * 113.74030 * 139.94241 * 19 18 6 34 34 H 1.09000 * 113.61444 * 254.52755 * 20 6 5 35 35 H 1.09002 * 113.61651 * 25.34823 * 20 6 5 36 36 H 1.07999 * 119.99969 * 180.02562 * 21 5 4 37 37 H 1.08001 * 120.00159 * 0.02562 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1971 0.0000 4 6 3.5805 1.1971 -0.0059 5 6 4.2717 0.0000 -0.0005 6 6 5.7787 0.0000 -0.0005 7 6 6.3639 -0.5546 1.2726 8 8 7.1300 -1.4941 1.2292 9 7 6.0361 -0.0068 2.4597 10 6 6.6428 -0.4456 3.6081 11 1 7.3832 -1.2306 3.5617 12 6 6.3053 0.1195 4.8318 13 7 5.4048 1.0750 4.8881 14 14 7.1314 -0.4789 6.3966 15 1 8.5975 -0.2655 6.2951 16 1 6.5996 0.2785 7.5579 17 1 6.8534 -1.9260 6.5808 18 6 6.3947 1.3427 -0.4279 19 6 7.4411 0.5235 -1.2053 20 6 6.3947 -0.6013 -1.2748 21 6 3.5805 -1.1971 0.0053 22 6 2.1981 -1.1971 0.0058 23 1 -0.3633 0.0050 1.0276 24 1 -0.3633 0.8874 -0.5182 25 1 -0.3633 -0.8925 -0.5096 26 1 1.6581 2.1325 0.0004 27 1 4.1205 2.1324 -0.0100 28 1 5.3711 0.6980 2.5013 29 1 5.1694 1.4697 5.7423 30 1 5.7432 1.9381 -1.0674 31 1 6.8137 1.9141 0.4003 32 1 8.3198 0.2666 -0.6138 33 1 7.6941 0.9451 -2.1781 34 1 6.8137 -1.5970 -1.1293 35 1 5.7426 -0.5397 -2.1461 36 1 4.1205 -2.1324 0.0099 37 1 1.6582 -2.1324 0.0100 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591757620.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:09:26 Heat of formation + Delta-G solvation = -4.841047 kcal Electronic energy + Delta-G solvation = -19358.793408 eV Core-core repulsion = 16486.958813 eV Total energy + Delta-G solvation = -2871.834595 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.28297 -38.27979 -36.43525 -33.88924 -32.49880 -31.14387 -30.63031 -27.82419 -25.52925 -25.27127 -23.83217 -22.18649 -20.78749 -20.62489 -18.23160 -17.56423 -16.67214 -15.60414 -14.93997 -14.81672 -14.67063 -14.16430 -13.99225 -13.58670 -13.42790 -13.13269 -12.91052 -12.43091 -12.23129 -12.00648 -11.82001 -11.55709 -11.29474 -11.16997 -11.04977 -10.71850 -10.45598 -10.41719 -10.21013 -9.95299 -9.81157 -9.47755 -8.60181 -8.57215 -7.97953 -7.90949 -6.40015 -3.80796 1.65762 1.75429 3.19995 3.26014 3.30413 3.84956 4.05809 4.18224 4.78211 4.97767 5.03519 5.10808 5.14327 5.18454 5.28022 5.36313 5.43104 5.57623 5.68453 5.71451 5.85902 5.93065 5.98970 6.02983 6.07259 6.28581 6.33207 6.38158 6.42995 6.53034 6.59839 6.72780 6.87166 6.89011 7.02724 7.34508 7.55588 8.07148 8.62655 9.17992 9.57380 10.07966 10.77109 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.016463 B = 0.007372 C = 0.005780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.404469 B = 3797.411581 C = 4842.951517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.098 4.098 3 C -0.119 4.119 4 C -0.111 4.111 5 C -0.058 4.058 6 C -0.058 4.058 7 C 0.468 3.532 8 O -0.592 6.592 9 N -0.551 5.551 10 C -0.302 4.302 11 H 0.102 0.898 12 C 0.025 3.975 13 N -0.897 5.897 14 Si 0.930 3.070 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.273 1.273 18 C -0.128 4.128 19 C -0.136 4.136 20 C -0.112 4.112 21 C -0.101 4.101 22 C -0.120 4.120 23 H 0.067 0.933 24 H 0.062 0.938 25 H 0.061 0.939 26 H 0.118 0.882 27 H 0.124 0.876 28 H 0.394 0.606 29 H 0.272 0.728 30 H 0.085 0.915 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.063 0.937 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.120 0.880 37 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.902 1.929 -10.620 12.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.098 4.098 3 C -0.137 4.137 4 C -0.129 4.129 5 C -0.058 4.058 6 C -0.061 4.061 7 C 0.253 3.747 8 O -0.478 6.478 9 N -0.185 5.185 10 C -0.432 4.432 11 H 0.120 0.880 12 C -0.178 4.178 13 N -0.537 5.537 14 Si 0.757 3.243 15 H -0.199 1.199 16 H -0.209 1.209 17 H -0.199 1.199 18 C -0.166 4.166 19 C -0.173 4.173 20 C -0.149 4.149 21 C -0.120 4.120 22 C -0.138 4.138 23 H 0.086 0.914 24 H 0.081 0.919 25 H 0.080 0.920 26 H 0.136 0.864 27 H 0.141 0.859 28 H 0.228 0.772 29 H 0.082 0.918 30 H 0.103 0.897 31 H 0.091 0.909 32 H 0.103 0.897 33 H 0.082 0.918 34 H 0.100 0.900 35 H 0.096 0.904 36 H 0.138 0.862 37 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -6.457 1.426 -10.446 12.363 hybrid contribution -0.100 0.191 1.028 1.050 sum -6.557 1.617 -9.418 11.589 Atomic orbital electron populations 1.20742 0.91691 1.02154 1.02098 1.19826 0.95688 0.93352 1.00956 1.20919 0.94066 0.97222 1.01525 1.21047 0.93963 0.97703 1.00142 1.19576 0.94011 0.93254 0.98997 1.20880 0.90689 0.98580 0.95963 1.19009 0.85727 0.86230 0.83726 1.90498 1.40393 1.30316 1.86561 1.41785 1.37057 1.34641 1.04995 1.19679 1.20499 1.19348 0.83679 0.87988 1.25271 0.96829 0.96215 0.99449 1.69623 1.31536 1.25434 1.27140 0.85936 0.79331 0.78785 0.80282 1.19860 1.20929 1.19890 1.23040 0.98043 0.95239 1.00240 1.22782 0.97617 0.97037 0.99885 1.22759 0.97207 0.99956 0.95000 1.20987 0.93915 0.97980 0.99070 1.20934 0.94041 0.97275 1.01519 0.91405 0.91923 0.91954 0.86433 0.85856 0.77237 0.91797 0.89695 0.90852 0.89740 0.91822 0.89991 0.90414 0.86168 0.86502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.19 10.01 36.00 0.36 -0.83 16 2 C -0.10 -1.40 5.88 -104.63 -0.62 -2.01 16 3 C -0.12 -1.73 9.70 -39.58 -0.38 -2.12 16 4 C -0.11 -1.77 9.05 -39.58 -0.36 -2.12 16 5 C -0.06 -1.03 4.65 -104.62 -0.49 -1.52 16 6 C -0.06 -1.09 0.94 -156.00 -0.15 -1.24 16 7 C 0.47 11.41 6.35 -10.99 -0.07 11.34 16 8 O -0.59 -16.32 15.47 5.54 0.09 -16.23 16 9 N -0.55 -14.47 5.23 -10.96 -0.06 -14.53 16 10 C -0.30 -8.60 9.68 -14.93 -0.14 -8.74 16 11 H 0.10 3.01 7.17 -52.48 -0.38 2.64 16 12 C 0.02 0.67 5.50 -17.47 -0.10 0.57 16 13 N -0.90 -24.82 13.05 55.50 0.72 -24.10 16 14 Si 0.93 21.31 29.55 -169.99 -5.02 16.29 16 15 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 16 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 17 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 18 C -0.13 -2.08 6.32 -25.82 -0.16 -2.24 16 19 C -0.14 -2.15 7.81 -25.82 -0.20 -2.35 16 20 C -0.11 -1.87 6.92 -25.92 -0.18 -2.05 16 21 C -0.10 -1.77 9.46 -39.58 -0.37 -2.14 16 22 C -0.12 -1.83 9.70 -39.58 -0.38 -2.21 16 23 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.06 0.58 8.09 -51.93 -0.42 0.16 16 25 H 0.06 0.59 8.09 -51.92 -0.42 0.17 16 26 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 27 H 0.12 1.79 6.43 -52.49 -0.34 1.45 16 28 H 0.39 10.20 7.73 -40.82 -0.32 9.89 16 29 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 30 H 0.08 1.16 6.81 -51.93 -0.35 0.81 16 31 H 0.07 1.28 8.09 -51.93 -0.42 0.86 16 32 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 33 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.08 1.51 7.36 -51.93 -0.38 1.13 16 35 H 0.08 1.13 8.09 -51.93 -0.42 0.71 16 36 H 0.12 2.14 8.06 -52.49 -0.42 1.72 16 37 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 LS Contribution 311.37 15.07 4.69 4.69 Total: -1.00 -30.97 311.37 -7.94 -38.91 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: -5.12 Total: 12.63 kcal Atomic # 6 Polarization: -14.42 SS G_CDS: -3.24 Total: -17.66 kcal Atomic # 7 Polarization: -39.29 SS G_CDS: 0.67 Total: -38.63 kcal Atomic # 8 Polarization: -16.32 SS G_CDS: 0.09 Total: -16.23 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -30.97 -7.94 -38.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591757620.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.073 kcal (2) G-P(sol) polarization free energy of solvation -30.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds