Wall clock time and date at job start Mon Mar 30 2020 00:09:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38233 * 120.00021 * 2 1 4 4 C 1.38236 * 120.00069 * 180.28023 * 3 2 1 5 5 C 1.38239 * 120.00091 * 359.46318 * 4 3 2 6 6 C 1.50695 * 120.00307 * 180.28022 * 5 4 3 7 7 C 1.50698 * 112.85212 * 113.79558 * 6 5 4 8 8 O 1.21299 * 120.00177 * 123.23150 * 7 6 5 9 9 N 1.34777 * 120.00249 * 303.23589 * 7 6 5 10 10 C 1.37095 * 120.00437 * 184.81140 * 9 7 6 11 11 H 1.08004 * 119.99765 * 359.97438 * 10 9 7 12 12 C 1.38949 * 120.00230 * 179.97438 * 10 9 7 13 13 N 1.31413 * 119.99719 * 359.97438 * 12 10 9 14 14 Si 1.86802 * 120.00030 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47056 * 59.99846 * 14 12 10 16 16 H 1.48497 * 109.46981 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.46822 * 299.99799 * 14 12 10 18 18 C 1.53787 * 113.61354 * 342.59984 * 6 5 4 19 19 C 1.53961 * 87.01893 * 220.04773 * 18 6 5 20 20 C 1.53781 * 113.61395 * 244.99394 * 6 5 4 21 21 C 1.38237 * 119.99638 * 0.25914 * 5 4 3 22 22 C 1.38234 * 120.00044 * 179.72132 * 2 1 3 23 23 H 1.08996 * 109.47013 * 270.27681 * 1 2 3 24 24 H 1.08999 * 109.47087 * 30.28274 * 1 2 3 25 25 H 1.09009 * 109.46813 * 150.27709 * 1 2 3 26 26 H 1.08001 * 120.00121 * 0.02562 * 3 2 1 27 27 H 1.08000 * 120.00454 * 179.74434 * 4 3 2 28 28 H 0.97000 * 119.99447 * 4.80051 * 9 7 6 29 29 H 0.96997 * 119.99458 * 180.02562 * 13 12 10 30 30 H 1.08992 * 113.61218 * 334.57011 * 18 6 5 31 31 H 1.08994 * 113.61141 * 105.47345 * 18 6 5 32 32 H 1.08997 * 113.53490 * 270.81057 * 19 18 6 33 33 H 1.08998 * 113.74030 * 139.94241 * 19 18 6 34 34 H 1.09000 * 113.61444 * 254.52755 * 20 6 5 35 35 H 1.09002 * 113.61651 * 25.34823 * 20 6 5 36 36 H 1.07999 * 119.99969 * 180.02562 * 21 5 4 37 37 H 1.08001 * 120.00159 * 0.02562 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1971 0.0000 4 6 3.5805 1.1971 -0.0059 5 6 4.2717 0.0000 -0.0005 6 6 5.7787 0.0000 -0.0005 7 6 6.3639 -0.5546 1.2726 8 8 7.1300 -1.4941 1.2292 9 7 6.0361 -0.0068 2.4597 10 6 6.6428 -0.4456 3.6081 11 1 7.3832 -1.2306 3.5617 12 6 6.3053 0.1195 4.8318 13 7 5.4048 1.0750 4.8881 14 14 7.1314 -0.4789 6.3966 15 1 8.5975 -0.2655 6.2951 16 1 6.5996 0.2785 7.5579 17 1 6.8534 -1.9260 6.5808 18 6 6.3947 1.3427 -0.4279 19 6 7.4411 0.5235 -1.2053 20 6 6.3947 -0.6013 -1.2748 21 6 3.5805 -1.1971 0.0053 22 6 2.1981 -1.1971 0.0058 23 1 -0.3633 0.0050 1.0276 24 1 -0.3633 0.8874 -0.5182 25 1 -0.3633 -0.8925 -0.5096 26 1 1.6581 2.1325 0.0004 27 1 4.1205 2.1324 -0.0100 28 1 5.3711 0.6980 2.5013 29 1 5.1694 1.4697 5.7423 30 1 5.7432 1.9381 -1.0674 31 1 6.8137 1.9141 0.4003 32 1 8.3198 0.2666 -0.6138 33 1 7.6941 0.9451 -2.1781 34 1 6.8137 -1.5970 -1.1293 35 1 5.7426 -0.5397 -2.1461 36 1 4.1205 -2.1324 0.0099 37 1 1.6582 -2.1324 0.0100 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591757620.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:09:25 Heat of formation + Delta-G solvation = -22.656139 kcal Electronic energy + Delta-G solvation = -19359.565928 eV Core-core repulsion = 16486.958813 eV Total energy + Delta-G solvation = -2872.607115 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.77370 -39.69419 -38.12550 -35.97251 -33.70906 -33.15708 -31.83157 -29.09186 -27.25865 -26.67214 -25.33864 -23.43165 -22.29818 -21.96150 -20.21593 -19.35861 -18.11490 -17.11102 -16.77614 -16.14319 -15.99716 -15.86110 -15.62838 -15.04629 -14.69872 -14.54792 -14.27974 -14.02034 -13.60141 -13.26604 -13.22400 -12.97079 -12.92120 -12.57759 -12.45334 -12.36118 -12.14609 -11.90456 -11.80103 -11.55737 -11.26035 -11.16506 -10.43177 -10.05596 -9.78323 -9.28766 -8.49368 -5.99280 0.43790 0.54013 1.36165 1.37994 1.49547 1.97392 2.26501 2.82426 3.13331 3.14274 3.64052 3.73570 3.82354 3.90057 4.05956 4.12607 4.19710 4.27435 4.53523 4.61580 4.68012 4.77373 4.79263 4.88914 4.90526 4.99210 5.00690 5.12170 5.20376 5.24338 5.32210 5.35985 5.47431 5.58933 5.73255 5.75656 5.96880 6.16965 6.54568 7.07082 7.51765 8.05922 8.67483 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.016463 B = 0.007372 C = 0.005780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.404469 B = 3797.411581 C = 4842.951517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.097 4.097 3 C -0.121 4.121 4 C -0.116 4.116 5 C -0.078 4.078 6 C -0.063 4.063 7 C 0.466 3.534 8 O -0.633 6.633 9 N -0.560 5.560 10 C -0.341 4.341 11 H 0.079 0.921 12 C -0.010 4.010 13 N -0.916 5.916 14 Si 0.994 3.006 15 H -0.269 1.269 16 H -0.267 1.267 17 H -0.273 1.273 18 C -0.117 4.117 19 C -0.131 4.131 20 C -0.106 4.106 21 C -0.125 4.125 22 C -0.127 4.127 23 H 0.071 0.929 24 H 0.082 0.918 25 H 0.075 0.925 26 H 0.147 0.853 27 H 0.137 0.863 28 H 0.394 0.606 29 H 0.279 0.721 30 H 0.122 0.878 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.102 0.898 34 H 0.055 0.945 35 H 0.108 0.892 36 H 0.101 0.899 37 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.676 3.394 -11.285 14.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.097 4.097 3 C -0.139 4.139 4 C -0.134 4.134 5 C -0.078 4.078 6 C -0.066 4.066 7 C 0.254 3.746 8 O -0.521 6.521 9 N -0.194 5.194 10 C -0.470 4.470 11 H 0.097 0.903 12 C -0.210 4.210 13 N -0.556 5.556 14 Si 0.817 3.183 15 H -0.194 1.194 16 H -0.192 1.192 17 H -0.198 1.198 18 C -0.154 4.154 19 C -0.168 4.168 20 C -0.144 4.144 21 C -0.143 4.143 22 C -0.145 4.145 23 H 0.090 0.910 24 H 0.101 0.899 25 H 0.094 0.906 26 H 0.165 0.835 27 H 0.155 0.845 28 H 0.228 0.772 29 H 0.088 0.912 30 H 0.140 0.860 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.121 0.879 34 H 0.074 0.926 35 H 0.126 0.874 36 H 0.119 0.881 37 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -8.245 2.906 -11.123 14.147 hybrid contribution 0.387 -0.294 1.200 1.294 sum -7.858 2.612 -9.924 12.925 Atomic orbital electron populations 1.20810 0.88946 1.03912 1.02832 1.20280 0.97715 0.92702 0.98993 1.21322 0.93634 0.98674 1.00271 1.21259 0.94900 0.97398 0.99858 1.19518 0.93027 0.94193 1.01088 1.20771 0.91888 1.00485 0.93484 1.20015 0.84470 0.85095 0.85060 1.90455 1.42076 1.32033 1.87544 1.41826 1.37337 1.34968 1.05279 1.19678 1.21615 1.20237 0.85456 0.90348 1.26079 0.97088 0.95963 1.01912 1.69687 1.31926 1.25720 1.28252 0.84992 0.78467 0.78304 0.76586 1.19421 1.19154 1.19837 1.23079 0.98200 0.94003 1.00124 1.22736 0.96229 0.96518 1.01295 1.22797 0.97746 0.98785 0.95045 1.21024 0.95166 0.97359 1.00788 1.21198 0.93221 0.98910 1.01147 0.90995 0.89930 0.90581 0.83483 0.84486 0.77202 0.91175 0.86019 0.92536 0.92656 0.87912 0.92637 0.87364 0.88110 0.84705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.95 10.01 71.23 0.71 -1.24 16 2 C -0.10 -2.50 5.88 -19.87 -0.12 -2.62 16 3 C -0.12 -3.17 9.70 22.27 0.22 -2.96 16 4 C -0.12 -3.50 9.05 22.27 0.20 -3.30 16 5 C -0.08 -2.74 4.65 -19.87 -0.09 -2.83 16 6 C -0.06 -2.41 0.94 -53.15 -0.05 -2.46 16 7 C 0.47 23.83 6.35 87.66 0.56 24.39 16 8 O -0.63 -37.05 15.47 -3.09 -0.05 -37.10 16 9 N -0.56 -30.66 5.23 -306.98 -1.61 -32.26 16 10 C -0.34 -20.15 9.68 84.04 0.81 -19.34 16 11 H 0.08 4.91 7.17 -2.91 -0.02 4.89 16 12 C -0.01 -0.56 5.50 84.93 0.47 -0.09 16 13 N -0.92 -50.81 13.05 21.66 0.28 -50.53 16 14 Si 0.99 43.91 29.55 68.60 2.03 45.94 16 15 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 16 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 17 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 18 C -0.12 -3.67 6.32 31.18 0.20 -3.47 16 19 C -0.13 -4.02 7.81 31.18 0.24 -3.78 16 20 C -0.11 -3.55 6.92 31.12 0.22 -3.34 16 21 C -0.13 -4.42 9.46 22.27 0.21 -4.21 16 22 C -0.13 -3.74 9.70 22.27 0.22 -3.52 16 23 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 24 H 0.08 1.18 8.09 -2.39 -0.02 1.16 16 25 H 0.08 1.17 8.09 -2.38 -0.02 1.16 16 26 H 0.15 2.93 8.06 -2.91 -0.02 2.91 16 27 H 0.14 3.63 6.43 -2.91 -0.02 3.61 16 28 H 0.39 21.09 7.73 -92.71 -0.72 20.37 16 29 H 0.28 14.42 8.31 -92.71 -0.77 13.65 16 30 H 0.12 2.94 6.81 -2.39 -0.02 2.93 16 31 H 0.06 1.97 8.09 -2.39 -0.02 1.95 16 32 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 34 H 0.05 2.14 7.36 -2.39 -0.02 2.12 16 35 H 0.11 2.95 8.09 -2.39 -0.02 2.93 16 36 H 0.10 3.82 8.06 -2.91 -0.02 3.80 16 37 H 0.14 3.34 8.06 -2.91 -0.02 3.31 16 Total: -1.00 -69.69 311.37 4.80 -64.88 By element: Atomic # 1 Polarization: 37.48 SS G_CDS: 0.35 Total: 37.83 kcal Atomic # 6 Polarization: -32.56 SS G_CDS: 3.79 Total: -28.76 kcal Atomic # 7 Polarization: -81.47 SS G_CDS: -1.32 Total: -82.79 kcal Atomic # 8 Polarization: -37.05 SS G_CDS: -0.05 Total: -37.10 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Total: -69.69 4.80 -64.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591757620.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.228 kcal (2) G-P(sol) polarization free energy of solvation -69.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds