Wall clock time and date at job start Mon Mar 30 2020 00:35:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 112.73662 * 2 1 4 4 C 1.53499 * 113.46865 * 229.18199 * 2 1 3 5 5 C 1.53758 * 83.25659 * 218.97968 * 4 2 1 6 6 N 1.47060 * 113.47027 * 130.74352 * 2 1 3 7 7 C 1.34779 * 136.05787 * 321.86613 * 6 2 1 8 8 O 1.21555 * 119.99769 * 357.04352 * 7 6 2 9 9 C 1.47881 * 120.00091 * 177.31318 * 7 6 2 10 10 C 1.39923 * 120.02549 * 187.61610 * 9 7 6 11 11 C 1.38324 * 120.35706 * 179.71587 * 10 9 7 12 12 C 1.37752 * 120.41196 * 0.56155 * 11 10 9 13 13 C 1.40749 * 120.04009 * 359.72154 * 12 11 10 14 14 C 1.41442 * 120.17530 * 180.02562 * 13 12 11 15 15 H 1.07996 * 119.99857 * 214.71446 * 14 13 12 16 16 C 1.39935 * 120.00084 * 34.72046 * 14 13 12 17 17 N 1.30831 * 120.00160 * 355.63366 * 16 14 13 18 18 Si 1.86802 * 120.00046 * 175.64236 * 16 14 13 19 19 H 1.48496 * 109.47199 * 59.98939 * 18 16 14 20 20 H 1.48497 * 109.47059 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.46532 * 299.99418 * 18 16 14 22 22 C 1.38995 * 120.02753 * 7.89091 * 9 7 6 23 23 H 1.08998 * 109.47347 * 308.76216 * 1 2 3 24 24 H 1.09001 * 109.47349 * 68.76245 * 1 2 3 25 25 H 1.08997 * 109.46732 * 188.76014 * 1 2 3 26 26 H 1.08999 * 109.47277 * 171.24273 * 3 2 1 27 27 H 1.09001 * 109.47224 * 291.23824 * 3 2 1 28 28 H 1.09003 * 109.47546 * 51.24059 * 3 2 1 29 29 H 1.08998 * 114.20372 * 332.73471 * 4 2 1 30 30 H 1.08995 * 114.20642 * 105.36434 * 4 2 1 31 31 H 1.08997 * 113.46473 * 271.50446 * 5 4 2 32 32 H 1.09005 * 113.54948 * 140.98155 * 5 4 2 33 33 H 1.07998 * 119.82056 * 359.97438 * 10 9 7 34 34 H 1.07999 * 119.79358 * 180.25380 * 11 10 9 35 35 H 1.08008 * 119.98224 * 179.73583 * 12 11 10 36 36 H 0.96998 * 120.00018 * 180.02562 * 17 16 14 37 37 H 1.08002 * 120.19711 * 359.97438 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1213 1.4111 0.0000 4 6 2.1413 -0.9204 -1.0656 5 6 3.1582 -1.2300 0.0454 6 7 2.1157 -0.8804 1.0220 7 6 1.8274 -1.2151 2.2954 8 8 0.8915 -0.6888 2.8650 9 6 2.6534 -2.2182 3.0014 10 6 2.2638 -2.6839 4.2620 11 6 3.0282 -3.6264 4.9260 12 6 4.1873 -4.1089 4.3593 13 6 4.5984 -3.6478 3.0946 14 6 5.7878 -4.1417 2.5099 15 1 6.4024 -3.4917 1.9049 16 6 6.1681 -5.4727 2.7153 17 7 5.4705 -6.2362 3.5165 18 14 7.6722 -6.1591 1.8456 19 1 8.8718 -5.3779 2.2405 20 1 7.8596 -7.5813 2.2292 21 1 7.4808 -6.0633 0.3761 22 6 3.8204 -2.6949 2.4158 23 1 -0.3634 0.6434 0.8013 24 1 -0.3634 0.3723 -0.9579 25 1 -0.3633 -1.0157 0.1565 26 1 3.1985 1.3537 0.1565 27 1 1.9184 1.8901 -0.9579 28 1 1.6684 1.9949 0.8014 29 1 1.5087 -1.7630 -1.3444 30 1 2.5609 -0.3943 -1.9230 31 1 4.0094 -0.5493 0.0567 32 1 3.4553 -2.2781 0.0841 33 1 1.3593 -2.3085 4.7173 34 1 2.7168 -3.9825 5.8968 35 1 4.7811 -4.8416 4.8858 36 1 5.7344 -7.1587 3.6591 37 1 4.1270 -2.3352 1.4447 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610116684.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:35:44 Heat of formation + Delta-G solvation = 21.292391 kcal Electronic energy + Delta-G solvation = -19205.174385 eV Core-core repulsion = 16334.473021 eV Total energy + Delta-G solvation = -2870.701364 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.53902 -37.95579 -36.72644 -33.59256 -31.84011 -29.88656 -29.73065 -28.64125 -27.41395 -25.31789 -23.24586 -22.80916 -20.88164 -20.27631 -18.11403 -16.99144 -15.85101 -15.78968 -15.54993 -15.10391 -14.60290 -14.05021 -13.77282 -13.43369 -13.13250 -12.95257 -12.56808 -12.33230 -12.27683 -11.90798 -11.69864 -11.59834 -11.49650 -11.27813 -11.14910 -11.06397 -10.67314 -10.46783 -10.32169 -10.01192 -9.49496 -9.22724 -8.96805 -8.33530 -7.64030 -7.37814 -6.67529 -4.48404 2.19919 2.74430 3.05267 3.06779 3.13217 3.21617 3.83864 3.93932 4.38606 4.66344 4.92528 5.01361 5.09319 5.22544 5.48982 5.53543 5.55210 5.62177 5.71288 5.85092 5.88007 5.93510 6.04165 6.17842 6.27922 6.34585 6.41843 6.48383 6.77643 6.93774 7.02582 7.23698 7.41092 7.65456 7.88554 7.94200 8.11822 8.24041 8.52582 8.82065 8.83624 8.88576 10.24528 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.023950 B = 0.005994 C = 0.005019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.800624 B = 4669.975751 C = 5577.467056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.151 3.849 3 C -0.147 4.147 4 C -0.150 4.150 5 C 0.093 3.907 6 N -0.636 5.636 7 C 0.593 3.407 8 O -0.556 6.556 9 C -0.124 4.124 10 C -0.163 4.163 11 C -0.124 4.124 12 C -0.124 4.124 13 C 0.092 3.908 14 C -0.468 4.468 15 H 0.076 0.924 16 C 0.071 3.929 17 N -0.815 5.815 18 Si 0.915 3.085 19 H -0.266 1.266 20 H -0.279 1.279 21 H -0.266 1.266 22 C -0.187 4.187 23 H 0.062 0.938 24 H 0.062 0.938 25 H 0.060 0.940 26 H 0.063 0.937 27 H 0.069 0.931 28 H 0.061 0.939 29 H 0.093 0.907 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.096 0.904 33 H 0.102 0.898 34 H 0.097 0.903 35 H 0.133 0.867 36 H 0.279 0.721 37 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.247 6.960 -8.629 11.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.066 3.934 3 C -0.206 4.206 4 C -0.188 4.188 5 C -0.030 4.030 6 N -0.372 5.372 7 C 0.388 3.612 8 O -0.435 6.435 9 C -0.127 4.127 10 C -0.183 4.183 11 C -0.143 4.143 12 C -0.144 4.144 13 C 0.090 3.910 14 C -0.499 4.499 15 H 0.094 0.906 16 C -0.143 4.143 17 N -0.443 5.443 18 Si 0.740 3.260 19 H -0.191 1.191 20 H -0.204 1.204 21 H -0.191 1.191 22 C -0.207 4.207 23 H 0.081 0.919 24 H 0.081 0.919 25 H 0.079 0.921 26 H 0.082 0.918 27 H 0.087 0.913 28 H 0.081 0.919 29 H 0.112 0.888 30 H 0.103 0.897 31 H 0.101 0.899 32 H 0.114 0.886 33 H 0.120 0.880 34 H 0.115 0.885 35 H 0.150 0.850 36 H 0.090 0.910 37 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -2.799 6.924 -7.989 10.936 hybrid contribution 0.706 -0.478 -0.278 0.896 sum -2.094 6.446 -8.266 10.690 Atomic orbital electron populations 1.21869 0.93680 1.02887 1.01713 1.21899 0.94710 0.91461 0.85330 1.21946 1.01424 0.94888 1.02308 1.23599 0.98918 1.00044 0.96215 1.23192 0.92215 1.02779 0.84818 1.49721 1.30211 1.45707 1.11564 1.18442 0.83497 0.81301 0.77958 1.90652 1.31782 1.55954 1.65159 1.19306 0.97173 0.99867 0.96308 1.20559 1.01191 1.01394 0.95151 1.20776 0.96543 0.98020 0.98915 1.21872 0.96466 1.00779 0.95265 1.17615 0.92608 0.90174 0.90610 1.19420 1.06273 0.95763 1.28491 0.90626 1.25839 0.97187 0.97166 0.94144 1.69712 1.36671 1.07930 1.29968 0.86254 0.81333 0.78066 0.80329 1.19066 1.20425 1.19096 1.21889 0.95294 1.03744 0.99743 0.91850 0.91863 0.92118 0.91829 0.91253 0.91949 0.88813 0.89670 0.89912 0.88569 0.88028 0.88510 0.84966 0.90993 0.86814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 8.78 37.16 0.33 -1.59 16 2 C 0.15 2.05 1.58 -136.29 -0.22 1.83 16 3 C -0.15 -1.70 9.26 37.16 0.34 -1.36 16 4 C -0.15 -1.69 7.63 -26.08 -0.20 -1.89 16 5 C 0.09 1.32 6.14 -8.37 -0.05 1.27 16 6 N -0.64 -11.19 3.36 -170.87 -0.57 -11.76 16 7 C 0.59 13.03 7.89 -12.31 -0.10 12.93 16 8 O -0.56 -13.37 16.64 5.32 0.09 -13.28 16 9 C -0.12 -2.91 5.87 -105.04 -0.62 -3.53 16 10 C -0.16 -3.87 9.60 -38.92 -0.37 -4.24 16 11 C -0.12 -2.92 10.01 -39.73 -0.40 -3.32 16 12 C -0.12 -3.16 8.67 -38.81 -0.34 -3.50 16 13 C 0.09 2.37 5.55 -106.87 -0.59 1.77 16 14 C -0.47 -11.88 9.04 -37.73 -0.34 -12.22 16 15 H 0.08 1.82 7.85 -52.49 -0.41 1.40 16 16 C 0.07 1.74 5.42 -17.34 -0.09 1.65 16 17 N -0.82 -20.65 10.60 55.55 0.59 -20.07 16 18 Si 0.92 18.27 29.56 -169.99 -5.03 13.25 16 19 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 20 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 21 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 22 C -0.19 -4.40 8.93 -38.45 -0.34 -4.74 16 23 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 24 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 25 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 26 H 0.06 0.73 7.02 -51.93 -0.36 0.37 16 27 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.09 1.05 8.12 -51.93 -0.42 0.63 16 30 H 0.08 0.73 8.11 -51.93 -0.42 0.30 16 31 H 0.08 1.05 7.28 -51.93 -0.38 0.67 16 32 H 0.10 1.49 6.15 -51.93 -0.32 1.17 16 33 H 0.10 2.34 7.66 -52.49 -0.40 1.94 16 34 H 0.10 2.02 8.06 -52.49 -0.42 1.60 16 35 H 0.13 3.47 6.13 -52.48 -0.32 3.15 16 36 H 0.28 6.52 8.30 -40.82 -0.34 6.18 16 37 H 0.11 2.38 3.84 -52.49 -0.20 2.18 16 LS Contribution 305.06 15.07 4.60 4.60 Total: -1.00 -29.38 305.06 -8.23 -37.61 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -4.91 Total: 6.59 kcal Atomic # 6 Polarization: -13.95 SS G_CDS: -2.99 Total: -16.94 kcal Atomic # 7 Polarization: -31.84 SS G_CDS: 0.01 Total: -31.83 kcal Atomic # 8 Polarization: -13.37 SS G_CDS: 0.09 Total: -13.28 kcal Atomic # 14 Polarization: 18.27 SS G_CDS: -5.03 Total: 13.25 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -29.38 -8.23 -37.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610116684.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.903 kcal (2) G-P(sol) polarization free energy of solvation -29.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds