Wall clock time and date at job start Mon Mar 30 2020 00:35:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 112.73662 * 2 1 4 4 C 1.53499 * 113.46865 * 229.18199 * 2 1 3 5 5 C 1.53758 * 83.25659 * 218.97968 * 4 2 1 6 6 N 1.47060 * 113.47027 * 130.74352 * 2 1 3 7 7 C 1.34779 * 136.05787 * 321.86613 * 6 2 1 8 8 O 1.21555 * 119.99769 * 357.04352 * 7 6 2 9 9 C 1.47881 * 120.00091 * 177.31318 * 7 6 2 10 10 C 1.39923 * 120.02549 * 187.61610 * 9 7 6 11 11 C 1.38324 * 120.35706 * 179.71587 * 10 9 7 12 12 C 1.37752 * 120.41196 * 0.56155 * 11 10 9 13 13 C 1.40749 * 120.04009 * 359.72154 * 12 11 10 14 14 C 1.41442 * 120.17530 * 180.02562 * 13 12 11 15 15 H 1.07996 * 119.99857 * 214.71446 * 14 13 12 16 16 C 1.39935 * 120.00084 * 34.72046 * 14 13 12 17 17 N 1.30831 * 120.00160 * 355.63366 * 16 14 13 18 18 Si 1.86802 * 120.00046 * 175.64236 * 16 14 13 19 19 H 1.48496 * 109.47199 * 59.98939 * 18 16 14 20 20 H 1.48497 * 109.47059 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.46532 * 299.99418 * 18 16 14 22 22 C 1.38995 * 120.02753 * 7.89091 * 9 7 6 23 23 H 1.08998 * 109.47347 * 308.76216 * 1 2 3 24 24 H 1.09001 * 109.47349 * 68.76245 * 1 2 3 25 25 H 1.08997 * 109.46732 * 188.76014 * 1 2 3 26 26 H 1.08999 * 109.47277 * 171.24273 * 3 2 1 27 27 H 1.09001 * 109.47224 * 291.23824 * 3 2 1 28 28 H 1.09003 * 109.47546 * 51.24059 * 3 2 1 29 29 H 1.08998 * 114.20372 * 332.73471 * 4 2 1 30 30 H 1.08995 * 114.20642 * 105.36434 * 4 2 1 31 31 H 1.08997 * 113.46473 * 271.50446 * 5 4 2 32 32 H 1.09005 * 113.54948 * 140.98155 * 5 4 2 33 33 H 1.07998 * 119.82056 * 359.97438 * 10 9 7 34 34 H 1.07999 * 119.79358 * 180.25380 * 11 10 9 35 35 H 1.08008 * 119.98224 * 179.73583 * 12 11 10 36 36 H 0.96998 * 120.00018 * 180.02562 * 17 16 14 37 37 H 1.08002 * 120.19711 * 359.97438 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1213 1.4111 0.0000 4 6 2.1413 -0.9204 -1.0656 5 6 3.1582 -1.2300 0.0454 6 7 2.1157 -0.8804 1.0220 7 6 1.8274 -1.2151 2.2954 8 8 0.8915 -0.6888 2.8650 9 6 2.6534 -2.2182 3.0014 10 6 2.2638 -2.6839 4.2620 11 6 3.0282 -3.6264 4.9260 12 6 4.1873 -4.1089 4.3593 13 6 4.5984 -3.6478 3.0946 14 6 5.7878 -4.1417 2.5099 15 1 6.4024 -3.4917 1.9049 16 6 6.1681 -5.4727 2.7153 17 7 5.4705 -6.2362 3.5165 18 14 7.6722 -6.1591 1.8456 19 1 8.8718 -5.3779 2.2405 20 1 7.8596 -7.5813 2.2292 21 1 7.4808 -6.0633 0.3761 22 6 3.8204 -2.6949 2.4158 23 1 -0.3634 0.6434 0.8013 24 1 -0.3634 0.3723 -0.9579 25 1 -0.3633 -1.0157 0.1565 26 1 3.1985 1.3537 0.1565 27 1 1.9184 1.8901 -0.9579 28 1 1.6684 1.9949 0.8014 29 1 1.5087 -1.7630 -1.3444 30 1 2.5609 -0.3943 -1.9230 31 1 4.0094 -0.5493 0.0567 32 1 3.4553 -2.2781 0.0841 33 1 1.3593 -2.3085 4.7173 34 1 2.7168 -3.9825 5.8968 35 1 4.7811 -4.8416 4.8858 36 1 5.7344 -7.1587 3.6591 37 1 4.1270 -2.3352 1.4447 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610116684.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:35:44 Heat of formation + Delta-G solvation = 5.012860 kcal Electronic energy + Delta-G solvation = -19205.880318 eV Core-core repulsion = 16334.473021 eV Total energy + Delta-G solvation = -2871.407297 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.83760 -39.62250 -38.48241 -35.45497 -33.20881 -31.76676 -31.24305 -30.05083 -28.37984 -27.21212 -24.66857 -24.17936 -22.57996 -21.95628 -19.71711 -18.54541 -17.49407 -17.31817 -16.86475 -16.66154 -16.28548 -15.40500 -15.28351 -15.09626 -14.66439 -14.44344 -14.13660 -13.63999 -13.44690 -13.25567 -13.12327 -12.92211 -12.79276 -12.72980 -12.56520 -12.46354 -12.20800 -12.10193 -12.04213 -11.49319 -11.10336 -11.01090 -10.62278 -9.76262 -9.49426 -9.27106 -8.51333 -6.42353 0.36855 0.90639 1.43241 1.51395 1.55054 1.87662 2.11037 2.25745 2.82686 3.33474 3.60734 3.71925 3.98257 4.02338 4.04784 4.26873 4.43710 4.46864 4.57262 4.68480 4.72050 4.85234 4.88167 4.94981 4.97913 5.02141 5.06669 5.13098 5.19680 5.26733 5.37125 5.44516 5.58447 5.78923 5.99274 6.04245 6.20798 6.61075 6.74382 6.92486 6.93897 7.23702 8.42301 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.023950 B = 0.005994 C = 0.005019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.800624 B = 4669.975751 C = 5577.467056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.139 3.861 3 C -0.143 4.143 4 C -0.123 4.123 5 C 0.081 3.919 6 N -0.642 5.642 7 C 0.585 3.415 8 O -0.590 6.590 9 C -0.133 4.133 10 C -0.180 4.180 11 C -0.121 4.121 12 C -0.150 4.150 13 C 0.065 3.935 14 C -0.494 4.494 15 H 0.084 0.916 16 C 0.029 3.971 17 N -0.845 5.845 18 Si 0.989 3.011 19 H -0.260 1.260 20 H -0.275 1.275 21 H -0.257 1.257 22 C -0.187 4.187 23 H 0.041 0.959 24 H 0.101 0.899 25 H 0.038 0.962 26 H 0.065 0.935 27 H 0.107 0.893 28 H 0.043 0.957 29 H 0.095 0.905 30 H 0.129 0.871 31 H 0.104 0.896 32 H 0.080 0.920 33 H 0.104 0.896 34 H 0.119 0.881 35 H 0.119 0.881 36 H 0.285 0.715 37 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.276 7.712 -11.556 13.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.056 3.944 3 C -0.201 4.201 4 C -0.160 4.160 5 C -0.041 4.041 6 N -0.376 5.376 7 C 0.378 3.622 8 O -0.473 6.473 9 C -0.135 4.135 10 C -0.200 4.200 11 C -0.140 4.140 12 C -0.170 4.170 13 C 0.063 3.937 14 C -0.524 4.524 15 H 0.102 0.898 16 C -0.183 4.183 17 N -0.473 5.473 18 Si 0.810 3.190 19 H -0.184 1.184 20 H -0.199 1.199 21 H -0.181 1.181 22 C -0.206 4.206 23 H 0.060 0.940 24 H 0.120 0.880 25 H 0.057 0.943 26 H 0.084 0.916 27 H 0.126 0.874 28 H 0.062 0.938 29 H 0.113 0.887 30 H 0.148 0.852 31 H 0.122 0.878 32 H 0.099 0.901 33 H 0.122 0.878 34 H 0.137 0.863 35 H 0.137 0.863 36 H 0.095 0.905 37 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -1.824 7.698 -10.959 13.516 hybrid contribution 0.349 -0.673 0.595 0.964 sum -1.475 7.025 -10.364 12.607 Atomic orbital electron populations 1.21865 0.93764 1.01254 1.03000 1.22387 0.94962 0.92680 0.84368 1.21950 1.01121 0.93210 1.03784 1.23550 0.96924 0.99506 0.96037 1.23498 0.93125 1.02411 0.85035 1.49932 1.31390 1.45782 1.10502 1.18212 0.83165 0.81286 0.79536 1.90616 1.33030 1.57135 1.66521 1.19672 0.97417 1.00007 0.96452 1.20729 1.01520 1.01895 0.95846 1.20971 0.95808 0.97486 0.99699 1.21840 0.97514 1.01784 0.95880 1.18009 0.93580 0.91062 0.91027 1.19725 1.06683 0.96752 1.29251 0.89827 1.26767 1.00035 0.97028 0.94495 1.69808 1.38176 1.08424 1.30883 0.85136 0.77273 0.77315 0.79288 1.18384 1.19928 1.18144 1.22145 0.94893 1.02991 1.00573 0.94021 0.88011 0.94258 0.91603 0.87439 0.93777 0.88683 0.85243 0.87769 0.90140 0.87817 0.86339 0.86335 0.90470 0.84434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.54 8.78 71.98 0.63 -2.90 16 2 C 0.14 3.42 1.58 0.40 0.00 3.42 16 3 C -0.14 -2.83 9.26 71.98 0.67 -2.17 16 4 C -0.12 -2.27 7.63 31.02 0.24 -2.03 16 5 C 0.08 2.11 6.14 83.27 0.51 2.62 16 6 N -0.64 -21.96 3.36 -812.77 -2.73 -24.69 16 7 C 0.58 26.07 7.89 86.80 0.68 26.75 16 8 O -0.59 -29.18 16.64 -3.89 -0.06 -29.25 16 9 C -0.13 -6.38 5.87 -20.13 -0.12 -6.50 16 10 C -0.18 -8.82 9.60 22.70 0.22 -8.60 16 11 C -0.12 -5.90 10.01 22.18 0.22 -5.67 16 12 C -0.15 -7.93 8.67 22.77 0.20 -7.73 16 13 C 0.07 3.43 5.55 -21.32 -0.12 3.31 16 14 C -0.49 -25.21 9.04 23.47 0.21 -24.99 16 15 H 0.08 3.99 7.85 -2.91 -0.02 3.96 16 16 C 0.03 1.40 5.42 85.25 0.46 1.86 16 17 N -0.85 -43.42 10.60 21.82 0.23 -43.19 16 18 Si 0.99 36.73 29.56 68.60 2.03 38.76 16 19 H -0.26 -9.32 7.11 99.48 0.71 -8.61 16 20 H -0.27 -9.89 7.11 99.48 0.71 -9.19 16 21 H -0.26 -9.13 7.11 99.48 0.71 -8.43 16 22 C -0.19 -8.89 8.93 23.01 0.21 -8.68 16 23 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 24 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 25 H 0.04 1.13 8.14 -2.39 -0.02 1.12 16 26 H 0.06 1.29 7.02 -2.39 -0.02 1.27 16 27 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.09 1.79 8.12 -2.39 -0.02 1.77 16 30 H 0.13 1.38 8.11 -2.39 -0.02 1.36 16 31 H 0.10 2.31 7.28 -2.39 -0.02 2.29 16 32 H 0.08 2.37 6.15 -2.38 -0.01 2.36 16 33 H 0.10 4.95 7.66 -2.91 -0.02 4.93 16 34 H 0.12 5.05 8.06 -2.91 -0.02 5.03 16 35 H 0.12 6.50 6.13 -2.91 -0.02 6.48 16 36 H 0.28 13.40 8.30 -92.71 -0.77 12.63 16 37 H 0.14 5.70 3.84 -2.91 -0.01 5.69 16 Total: -1.00 -66.34 305.06 4.54 -61.79 By element: Atomic # 1 Polarization: 26.82 SS G_CDS: 1.07 Total: 27.89 kcal Atomic # 6 Polarization: -35.32 SS G_CDS: 4.01 Total: -31.31 kcal Atomic # 7 Polarization: -65.38 SS G_CDS: -2.50 Total: -67.88 kcal Atomic # 8 Polarization: -29.18 SS G_CDS: -0.06 Total: -29.25 kcal Atomic # 14 Polarization: 36.73 SS G_CDS: 2.03 Total: 38.76 kcal Total: -66.34 4.54 -61.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610116684.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.807 kcal (2) G-P(sol) polarization free energy of solvation -66.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.795 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds