Wall clock time and date at job start Sun Mar 29 2020 23:34:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86800 * 120.00128 * 2 1 4 4 H 1.48497 * 109.47318 * 269.99984 * 3 2 1 5 5 H 1.48492 * 109.47023 * 30.00356 * 3 2 1 6 6 H 1.48506 * 109.46861 * 150.00151 * 3 2 1 7 7 C 1.38798 * 119.99696 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99887 * 180.02562 * 7 2 1 9 9 S 1.76205 * 120.00323 * 359.97438 * 7 2 1 10 10 C 1.81004 * 99.99953 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.46578 * 180.02562 * 10 9 7 12 12 C 1.53004 * 109.46605 * 180.02562 * 11 10 9 13 13 N 1.46905 * 109.46878 * 179.97438 * 12 11 10 14 14 C 1.46901 * 111.00161 * 189.99805 * 13 12 11 15 15 C 1.52997 * 109.47126 * 75.86930 * 14 13 12 16 16 C 1.53006 * 109.47241 * 174.83906 * 15 14 13 17 17 O 1.42902 * 109.47028 * 180.02562 * 16 15 14 18 18 C 1.46902 * 111.00301 * 66.04191 * 13 12 11 19 19 C 1.52996 * 117.49830 * 254.39279 * 18 13 12 20 20 C 1.52996 * 117.49788 * 185.73181 * 18 13 12 21 21 H 0.97003 * 120.00239 * 359.97438 * 1 2 3 22 22 H 1.08998 * 109.47054 * 60.00322 * 10 9 7 23 23 H 1.09002 * 109.47102 * 300.00148 * 10 9 7 24 24 H 1.08998 * 109.47414 * 60.00239 * 11 10 9 25 25 H 1.09006 * 109.46979 * 299.99342 * 11 10 9 26 26 H 1.08998 * 109.47234 * 59.99891 * 12 11 10 27 27 H 1.09000 * 109.47361 * 299.99494 * 12 11 10 28 28 H 1.09007 * 109.46574 * 315.87603 * 14 13 12 29 29 H 1.08993 * 109.47878 * 195.87518 * 14 13 12 30 30 H 1.08999 * 109.47788 * 294.84463 * 15 14 13 31 31 H 1.09001 * 109.47165 * 54.84306 * 15 14 13 32 32 H 1.09002 * 109.46886 * 300.00504 * 16 15 14 33 33 H 1.09001 * 109.46715 * 60.00124 * 16 15 14 34 34 H 0.96699 * 113.99479 * 180.02562 * 17 16 15 35 35 H 1.09004 * 115.54724 * 40.06511 * 18 13 12 36 36 H 1.08999 * 117.49966 * 0.02562 * 19 18 13 37 37 H 1.09002 * 117.49541 * 145.01880 * 19 18 13 38 38 H 1.09003 * 117.49827 * 214.97722 * 20 18 13 39 39 H 1.08995 * 117.50373 * 359.97438 * 20 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4400 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 16 1.1292 -2.7280 -0.0005 10 6 2.5158 -3.8915 -0.0005 11 6 1.9791 -5.3243 -0.0012 12 6 3.1512 -6.3077 -0.0005 13 7 2.6360 -7.6835 -0.0005 14 6 3.7160 -8.6502 0.2382 15 6 4.0947 -8.6361 1.7205 16 6 5.1276 -9.7313 1.9935 17 8 5.4808 -9.7185 3.3781 18 6 1.9303 -7.9815 -1.2540 19 6 0.4024 -8.0436 -1.2070 20 6 1.2167 -9.3307 -1.3595 21 1 -0.4851 0.8401 0.0004 22 1 3.1243 -3.7315 0.8895 23 1 3.1244 -3.7314 -0.8905 24 1 1.3708 -5.4840 -0.8914 25 1 1.3703 -5.4846 0.8887 26 1 3.7592 -6.1478 0.8899 27 1 3.7604 -6.1476 -0.8901 28 1 4.5852 -8.3792 -0.3614 29 1 3.3788 -9.6483 -0.0412 30 1 4.5178 -7.6652 1.9783 31 1 3.2054 -8.8168 2.3244 32 1 4.7045 -10.7022 1.7357 33 1 6.0169 -9.5507 1.3896 34 1 6.1337 -10.3883 3.6236 35 1 2.3903 -7.5833 -2.1585 36 1 -0.0793 -7.8629 -0.2460 37 1 -0.1430 -7.6866 -2.0807 38 1 1.2068 -9.8200 -2.3334 39 1 1.2712 -9.9975 -0.4990 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610409930.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:34:14 Heat of formation + Delta-G solvation = -42.087210 kcal Electronic energy + Delta-G solvation = -16953.482351 eV Core-core repulsion = 14215.476593 eV Total energy + Delta-G solvation = -2738.005758 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 259.135 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.91226 -37.20713 -35.02966 -33.34502 -32.39026 -30.64765 -26.24990 -25.41518 -24.26692 -22.38341 -21.45068 -21.28176 -20.06644 -17.59058 -17.38482 -16.43473 -15.80873 -15.62499 -14.81237 -14.76031 -14.28807 -14.02016 -13.73141 -13.63624 -12.92967 -12.66495 -12.29865 -12.04833 -11.66221 -11.51825 -11.29538 -11.25548 -11.05509 -10.99516 -10.73700 -10.62073 -10.56731 -10.24759 -10.19042 -10.01567 -9.47907 -9.02259 -8.34893 -8.24486 -6.47678 -6.19048 -3.88625 3.23736 3.24726 3.31418 3.46895 3.67900 3.79598 4.18192 4.26663 4.72885 4.90576 4.93887 4.99108 5.03432 5.14022 5.16724 5.17898 5.29649 5.37134 5.47617 5.52637 5.58414 5.64047 5.69229 5.81727 5.94504 5.97842 6.01869 6.12194 6.17328 6.21928 6.42758 6.67882 6.83082 7.06733 7.15249 7.35932 7.64108 8.40363 9.27176 10.89151 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.022651 B = 0.003789 C = 0.003353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.869547 B = 7387.430711 C = 8348.916268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.070 3.930 3 Si 0.918 3.082 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.516 4.516 8 H 0.071 0.929 9 S -0.132 6.132 10 C -0.113 4.113 11 C -0.090 4.090 12 C 0.062 3.938 13 N -0.510 5.510 14 C 0.061 3.939 15 C -0.118 4.118 16 C 0.078 3.922 17 O -0.574 6.574 18 C 0.007 3.993 19 C -0.157 4.157 20 C -0.179 4.179 21 H 0.267 0.733 22 H 0.059 0.941 23 H 0.056 0.944 24 H 0.067 0.933 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.032 0.968 28 H 0.035 0.965 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.044 0.956 33 H 0.043 0.957 34 H 0.378 0.622 35 H 0.087 0.913 36 H 0.102 0.898 37 H 0.095 0.905 38 H 0.092 0.908 39 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.855 -20.719 -0.644 22.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.138 4.138 3 Si 0.744 3.256 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.664 4.664 8 H 0.090 0.910 9 S 0.097 5.903 10 C -0.262 4.262 11 C -0.129 4.129 12 C -0.066 4.066 13 N -0.234 5.234 14 C -0.067 4.067 15 C -0.156 4.156 16 C 0.000 4.000 17 O -0.379 6.379 18 C -0.101 4.101 19 C -0.195 4.195 20 C -0.216 4.216 21 H 0.076 0.924 22 H 0.078 0.922 23 H 0.075 0.925 24 H 0.085 0.915 25 H 0.090 0.910 26 H 0.093 0.907 27 H 0.051 0.949 28 H 0.053 0.947 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.097 0.903 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.224 0.776 35 H 0.105 0.895 36 H 0.121 0.879 37 H 0.113 0.887 38 H 0.110 0.890 39 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 5.803 -20.333 -0.253 21.147 hybrid contribution 2.911 0.952 -0.741 3.151 sum 8.715 -19.382 -0.994 21.274 Atomic orbital electron populations 1.70026 1.05905 1.27252 1.47381 1.25009 0.95073 0.99048 0.94680 0.86175 0.79470 0.81621 0.78315 1.20322 1.20762 1.19699 1.22704 0.94515 0.90900 1.58301 0.91039 1.84622 1.09600 0.99282 1.96822 1.23242 1.02796 0.97593 1.02573 1.21222 0.96893 0.91557 1.03235 1.22246 0.97133 0.86664 1.00605 1.61725 1.26673 1.02769 1.32260 1.21924 0.92906 0.96591 0.95288 1.21496 0.98977 0.98845 0.96261 1.22127 0.97361 0.98435 0.82110 1.86510 1.64854 1.60647 1.25853 1.22381 0.94668 1.01102 0.91997 1.23073 0.92956 0.99741 1.03700 1.23051 1.05054 0.90911 1.02597 0.92354 0.92235 0.92492 0.91465 0.90965 0.90676 0.94930 0.94691 0.90757 0.91088 0.90252 0.93762 0.93895 0.77569 0.89532 0.87929 0.88690 0.89003 0.88592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.37 13.22 55.49 0.73 -25.64 16 2 C 0.07 2.04 5.49 -17.43 -0.10 1.95 16 3 Si 0.92 21.85 29.55 -169.99 -5.02 16.83 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.52 -15.09 9.50 30.94 0.29 -14.80 16 8 H 0.07 2.03 7.80 -52.48 -0.41 1.62 16 9 S -0.13 -3.52 21.44 -107.50 -2.30 -5.83 16 10 C -0.11 -2.35 5.67 37.16 0.21 -2.14 16 11 C -0.09 -1.55 5.18 -26.73 -0.14 -1.69 16 12 C 0.06 0.88 4.78 -3.82 -0.02 0.86 16 13 N -0.51 -6.37 4.57 -226.64 -1.04 -7.40 16 14 C 0.06 0.62 4.95 -3.82 -0.02 0.60 16 15 C -0.12 -1.24 5.62 -26.73 -0.15 -1.39 16 16 C 0.08 0.66 7.05 37.16 0.26 0.93 16 17 O -0.57 -5.53 13.66 -35.23 -0.48 -6.01 16 18 C 0.01 0.08 4.18 -67.72 -0.28 -0.20 16 19 C -0.16 -1.79 10.00 -26.70 -0.27 -2.06 16 20 C -0.18 -1.72 9.56 -26.70 -0.26 -1.98 16 21 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 22 H 0.06 1.24 8.14 -51.92 -0.42 0.81 16 23 H 0.06 1.17 8.14 -51.92 -0.42 0.75 16 24 H 0.07 1.17 7.02 -51.93 -0.36 0.81 16 25 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 26 H 0.07 1.05 6.72 -51.93 -0.35 0.70 16 27 H 0.03 0.45 8.09 -51.93 -0.42 0.03 16 28 H 0.03 0.35 8.00 -51.93 -0.42 -0.07 16 29 H 0.07 0.67 6.80 -51.93 -0.35 0.32 16 30 H 0.07 0.84 6.96 -51.93 -0.36 0.48 16 31 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.38 1.76 9.12 45.56 0.42 2.17 16 35 H 0.09 1.03 8.10 -51.93 -0.42 0.61 16 36 H 0.10 1.28 8.14 -51.93 -0.42 0.85 16 37 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.10 0.90 7.72 -51.93 -0.40 0.50 16 LS Contribution 333.65 15.07 5.03 5.03 Total: -1.00 -32.66 333.65 -9.56 -42.22 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -6.02 Total: 0.72 kcal Atomic # 6 Polarization: -19.45 SS G_CDS: -0.46 Total: -19.91 kcal Atomic # 7 Polarization: -32.74 SS G_CDS: -0.30 Total: -33.04 kcal Atomic # 8 Polarization: -5.53 SS G_CDS: -0.48 Total: -6.01 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Atomic # 16 Polarization: -3.52 SS G_CDS: -2.30 Total: -5.83 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.66 -9.56 -42.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610409930.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.132 kcal (2) G-P(sol) polarization free energy of solvation -32.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds