Wall clock time and date at job start Sun Mar 29 2020 23:34:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86800 * 120.00128 * 2 1 4 4 H 1.48497 * 109.47318 * 269.99984 * 3 2 1 5 5 H 1.48492 * 109.47023 * 30.00356 * 3 2 1 6 6 H 1.48506 * 109.46861 * 150.00151 * 3 2 1 7 7 C 1.38798 * 119.99696 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99887 * 180.02562 * 7 2 1 9 9 S 1.76205 * 120.00323 * 359.97438 * 7 2 1 10 10 C 1.81004 * 99.99953 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.46578 * 180.02562 * 10 9 7 12 12 C 1.53004 * 109.46605 * 180.02562 * 11 10 9 13 13 N 1.46905 * 109.46878 * 179.97438 * 12 11 10 14 14 C 1.46901 * 111.00161 * 189.99805 * 13 12 11 15 15 C 1.52997 * 109.47126 * 75.86930 * 14 13 12 16 16 C 1.53006 * 109.47241 * 174.83906 * 15 14 13 17 17 O 1.42902 * 109.47028 * 180.02562 * 16 15 14 18 18 C 1.46902 * 111.00301 * 66.04191 * 13 12 11 19 19 C 1.52996 * 117.49830 * 254.39279 * 18 13 12 20 20 C 1.52996 * 117.49788 * 185.73181 * 18 13 12 21 21 H 0.97003 * 120.00239 * 359.97438 * 1 2 3 22 22 H 1.08998 * 109.47054 * 60.00322 * 10 9 7 23 23 H 1.09002 * 109.47102 * 300.00148 * 10 9 7 24 24 H 1.08998 * 109.47414 * 60.00239 * 11 10 9 25 25 H 1.09006 * 109.46979 * 299.99342 * 11 10 9 26 26 H 1.08998 * 109.47234 * 59.99891 * 12 11 10 27 27 H 1.09000 * 109.47361 * 299.99494 * 12 11 10 28 28 H 1.09007 * 109.46574 * 315.87603 * 14 13 12 29 29 H 1.08993 * 109.47878 * 195.87518 * 14 13 12 30 30 H 1.08999 * 109.47788 * 294.84463 * 15 14 13 31 31 H 1.09001 * 109.47165 * 54.84306 * 15 14 13 32 32 H 1.09002 * 109.46886 * 300.00504 * 16 15 14 33 33 H 1.09001 * 109.46715 * 60.00124 * 16 15 14 34 34 H 0.96699 * 113.99479 * 180.02562 * 17 16 15 35 35 H 1.09004 * 115.54724 * 40.06511 * 18 13 12 36 36 H 1.08999 * 117.49966 * 0.02562 * 19 18 13 37 37 H 1.09002 * 117.49541 * 145.01880 * 19 18 13 38 38 H 1.09003 * 117.49827 * 214.97722 * 20 18 13 39 39 H 1.08995 * 117.50373 * 359.97438 * 20 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4400 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 16 1.1292 -2.7280 -0.0005 10 6 2.5158 -3.8915 -0.0005 11 6 1.9791 -5.3243 -0.0012 12 6 3.1512 -6.3077 -0.0005 13 7 2.6360 -7.6835 -0.0005 14 6 3.7160 -8.6502 0.2382 15 6 4.0947 -8.6361 1.7205 16 6 5.1276 -9.7313 1.9935 17 8 5.4808 -9.7185 3.3781 18 6 1.9303 -7.9815 -1.2540 19 6 0.4024 -8.0436 -1.2070 20 6 1.2167 -9.3307 -1.3595 21 1 -0.4851 0.8401 0.0004 22 1 3.1243 -3.7315 0.8895 23 1 3.1244 -3.7314 -0.8905 24 1 1.3708 -5.4840 -0.8914 25 1 1.3703 -5.4846 0.8887 26 1 3.7592 -6.1478 0.8899 27 1 3.7604 -6.1476 -0.8901 28 1 4.5852 -8.3792 -0.3614 29 1 3.3788 -9.6483 -0.0412 30 1 4.5178 -7.6652 1.9783 31 1 3.2054 -8.8168 2.3244 32 1 4.7045 -10.7022 1.7357 33 1 6.0169 -9.5507 1.3896 34 1 6.1337 -10.3883 3.6236 35 1 2.3903 -7.5833 -2.1585 36 1 -0.0793 -7.8629 -0.2460 37 1 -0.1430 -7.6866 -2.0807 38 1 1.2068 -9.8200 -2.3334 39 1 1.2712 -9.9975 -0.4990 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610409930.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:34:14 Heat of formation + Delta-G solvation = -64.857778 kcal Electronic energy + Delta-G solvation = -16954.469757 eV Core-core repulsion = 14215.476593 eV Total energy + Delta-G solvation = -2738.993164 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 259.135 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.84911 -37.90322 -36.02199 -34.65030 -34.47274 -31.67565 -27.95566 -27.09174 -25.20897 -23.20651 -22.82392 -22.09980 -21.05368 -19.55638 -18.24039 -17.39570 -16.90104 -16.79954 -16.45687 -16.16137 -15.74640 -15.25851 -14.95469 -14.52983 -14.37177 -13.67008 -13.54545 -13.46160 -13.08664 -12.92955 -12.89924 -12.53299 -12.35356 -12.29646 -12.03060 -11.99527 -11.69211 -11.37917 -11.19890 -11.14392 -10.97631 -10.84339 -10.32136 -9.30398 -8.66947 -8.37558 -6.14018 1.30826 1.39073 1.48339 1.73950 2.27999 2.67265 2.91721 2.96433 3.31584 3.50071 3.89860 4.01786 4.05999 4.10072 4.16173 4.26471 4.33431 4.38362 4.43459 4.47221 4.56248 4.63617 4.70861 4.78902 4.82437 4.84340 4.85971 5.12802 5.16179 5.20469 5.29532 5.34130 5.35732 5.38986 6.07950 6.17638 6.19870 6.93408 7.04326 8.71963 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.022651 B = 0.003789 C = 0.003353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.869547 B = 7387.430711 C = 8348.916268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.015 3.985 3 Si 0.995 3.005 4 H -0.267 1.267 5 H -0.273 1.273 6 H -0.263 1.263 7 C -0.540 4.540 8 H 0.072 0.928 9 S -0.196 6.196 10 C -0.088 4.088 11 C -0.076 4.076 12 C 0.073 3.927 13 N -0.521 5.521 14 C 0.066 3.934 15 C -0.116 4.116 16 C 0.080 3.920 17 O -0.600 6.600 18 C -0.007 4.007 19 C -0.173 4.173 20 C -0.151 4.151 21 H 0.272 0.728 22 H 0.060 0.940 23 H 0.061 0.939 24 H 0.063 0.937 25 H 0.059 0.941 26 H 0.076 0.924 27 H 0.039 0.961 28 H 0.043 0.957 29 H 0.092 0.908 30 H 0.052 0.948 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.057 0.943 34 H 0.398 0.602 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.097 0.903 38 H 0.113 0.887 39 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.517 -21.778 -1.164 23.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.190 4.190 3 Si 0.817 3.183 4 H -0.192 1.192 5 H -0.198 1.198 6 H -0.188 1.188 7 C -0.688 4.688 8 H 0.090 0.910 9 S 0.033 5.967 10 C -0.237 4.237 11 C -0.115 4.115 12 C -0.056 4.056 13 N -0.245 5.245 14 C -0.062 4.062 15 C -0.154 4.154 16 C 0.002 3.998 17 O -0.408 6.408 18 C -0.115 4.115 19 C -0.211 4.211 20 C -0.188 4.188 21 H 0.081 0.919 22 H 0.078 0.922 23 H 0.079 0.921 24 H 0.082 0.918 25 H 0.078 0.922 26 H 0.094 0.906 27 H 0.057 0.943 28 H 0.061 0.939 29 H 0.110 0.890 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.248 0.752 35 H 0.104 0.896 36 H 0.104 0.896 37 H 0.115 0.885 38 H 0.131 0.869 39 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 7.476 -21.424 -0.770 22.704 hybrid contribution 2.385 1.180 -0.559 2.719 sum 9.861 -20.244 -1.329 22.558 Atomic orbital electron populations 1.70158 1.07701 1.28560 1.47965 1.26083 0.96053 1.03136 0.93725 0.85003 0.78156 0.76293 0.78873 1.19174 1.19835 1.18759 1.23049 0.94718 0.92064 1.58921 0.91010 1.84645 1.14014 1.01069 1.97018 1.23164 1.00148 0.97732 1.02688 1.21070 0.97890 0.90090 1.02439 1.22019 0.95465 0.87157 1.00964 1.61649 1.27660 1.02174 1.32990 1.21945 0.92496 0.96705 0.95017 1.21462 0.98847 0.98836 0.96279 1.22123 0.97361 0.98390 0.81929 1.86452 1.65885 1.61982 1.26519 1.22448 0.94419 1.03100 0.91557 1.23067 0.93047 1.01967 1.03037 1.23110 1.01973 0.89845 1.03901 0.91940 0.92163 0.92062 0.91815 0.92201 0.90588 0.94293 0.93875 0.88981 0.92954 0.92029 0.91885 0.92499 0.75214 0.89571 0.89557 0.88454 0.86921 0.88019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.76 13.22 21.65 0.29 -55.47 16 2 C 0.01 0.86 5.49 84.86 0.47 1.33 16 3 Si 1.00 44.66 29.55 68.60 2.03 46.68 16 4 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 5 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 6 H -0.26 -11.33 7.11 99.48 0.71 -10.63 16 7 C -0.54 -31.98 9.50 67.95 0.65 -31.33 16 8 H 0.07 4.10 7.80 -2.91 -0.02 4.07 16 9 S -0.20 -10.79 21.44 -56.49 -1.21 -12.00 16 10 C -0.09 -3.69 5.67 71.98 0.41 -3.28 16 11 C -0.08 -2.61 5.18 30.59 0.16 -2.45 16 12 C 0.07 2.00 4.78 86.30 0.41 2.42 16 13 N -0.52 -12.35 4.57 -870.97 -3.98 -16.33 16 14 C 0.07 1.21 4.95 86.30 0.43 1.63 16 15 C -0.12 -2.31 5.62 30.60 0.17 -2.14 16 16 C 0.08 1.19 7.05 71.98 0.51 1.70 16 17 O -0.60 -10.62 13.66 -148.98 -2.04 -12.66 16 18 C -0.01 -0.15 4.18 44.91 0.19 0.04 16 19 C -0.17 -3.84 10.00 30.62 0.31 -3.53 16 20 C -0.15 -2.55 9.56 30.62 0.29 -2.25 16 21 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 22 H 0.06 2.51 8.14 -2.40 -0.02 2.49 16 23 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 24 H 0.06 2.24 7.02 -2.39 -0.02 2.22 16 25 H 0.06 2.20 8.14 -2.38 -0.02 2.18 16 26 H 0.08 2.07 6.72 -2.39 -0.02 2.05 16 27 H 0.04 1.02 8.09 -2.39 -0.02 1.00 16 28 H 0.04 0.75 8.00 -2.38 -0.02 0.73 16 29 H 0.09 1.38 6.80 -2.39 -0.02 1.37 16 30 H 0.05 1.22 6.96 -2.39 -0.02 1.20 16 31 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.40 2.96 9.12 -74.06 -0.68 2.29 16 35 H 0.09 1.91 8.10 -2.38 -0.02 1.89 16 36 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 37 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 38 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.10 1.63 7.72 -2.39 -0.02 1.61 16 Total: -1.00 -70.83 333.65 -0.59 -71.42 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: 0.34 Total: 16.24 kcal Atomic # 6 Polarization: -41.86 SS G_CDS: 3.98 Total: -37.88 kcal Atomic # 7 Polarization: -68.12 SS G_CDS: -3.69 Total: -71.81 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: -2.04 Total: -12.66 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.68 kcal Atomic # 16 Polarization: -10.79 SS G_CDS: -1.21 Total: -12.00 kcal Total: -70.83 -0.59 -71.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610409930.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.566 kcal (2) G-P(sol) polarization free energy of solvation -70.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds