Wall clock time and date at job start Mon Mar 30 2020 00:27:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47209 * 179.97438 * 2 1 4 4 N 1.46496 * 109.46676 * 138.38349 * 3 2 1 5 5 C 1.36938 * 120.00215 * 270.71319 * 4 3 2 6 6 H 1.08003 * 120.00315 * 187.85125 * 5 4 3 7 7 C 1.38813 * 119.99735 * 7.85586 * 5 4 3 8 8 N 1.31618 * 120.00284 * 25.66216 * 7 5 4 9 9 Si 1.86805 * 119.99951 * 205.66502 * 7 5 4 10 10 H 1.48497 * 109.47234 * 89.99766 * 9 7 5 11 11 H 1.48494 * 109.46990 * 210.00022 * 9 7 5 12 12 H 1.48503 * 109.47085 * 329.99928 * 9 7 5 13 13 C 1.46499 * 120.00175 * 90.72158 * 4 3 2 14 14 C 1.53005 * 109.46945 * 269.99457 * 13 4 3 15 15 O 1.42900 * 109.46925 * 64.99938 * 14 13 4 16 16 C 1.35897 * 117.00069 * 180.02562 * 15 14 13 17 17 C 1.38732 * 120.05287 * 359.71885 * 16 15 14 18 18 C 1.38151 * 119.94043 * 179.77322 * 17 16 15 19 19 C 1.38264 * 120.05643 * 0.50331 * 18 17 16 20 20 C 1.50701 * 119.94165 * 179.76772 * 19 18 17 21 21 C 1.38259 * 120.11295 * 359.75196 * 19 18 17 22 22 C 1.38147 * 120.05410 * 359.97438 * 21 19 18 23 23 H 4.40636 * 5.51410 * 180.02562 * 4 1 2 24 24 H 1.09000 * 109.46802 * 18.38882 * 3 2 1 25 25 H 1.08995 * 109.46953 * 258.38608 * 3 2 1 26 26 H 0.96998 * 119.99725 * 179.97438 * 8 7 5 27 27 H 1.08994 * 109.47801 * 149.99513 * 13 4 3 28 28 H 1.08996 * 109.47016 * 29.99406 * 13 4 3 29 29 H 1.08997 * 109.46979 * 304.99824 * 14 13 4 30 30 H 1.08997 * 109.47085 * 184.99396 * 14 13 4 31 31 H 1.07999 * 120.03014 * 359.97438 * 17 16 15 32 32 H 1.07998 * 119.96939 * 180.25767 * 18 17 16 33 33 H 1.08994 * 109.47171 * 269.98031 * 20 19 18 34 34 H 1.09002 * 109.47287 * 29.98671 * 20 19 18 35 35 H 1.09007 * 109.46798 * 149.98297 * 20 19 18 36 36 H 1.07998 * 119.97627 * 179.97438 * 21 19 18 37 37 H 1.08003 * 120.02841 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1338 1.0335 -0.9173 5 6 3.3483 0.7324 -2.2359 6 1 3.8257 1.4527 -2.8836 7 6 2.9518 -0.4987 -2.7400 8 7 1.9675 -1.1584 -2.1670 9 14 3.8154 -1.2193 -4.2315 10 1 4.9626 -2.0502 -3.7858 11 1 2.8616 -2.0618 -4.9966 12 1 4.3085 -0.1184 -5.0977 13 6 3.3924 2.3885 -0.4241 14 6 2.1223 3.2311 -0.5582 15 8 1.1082 2.7037 0.2993 16 6 -0.0922 3.3408 0.2998 17 6 -0.2880 4.4544 -0.5042 18 6 -1.5106 5.0975 -0.5055 19 6 -2.5354 4.6386 0.3013 20 6 -3.8664 5.3453 0.3018 21 6 -2.3411 3.5322 1.1074 22 6 -1.1221 2.8822 1.1081 23 1 -1.0501 -0.0001 0.0003 24 1 3.0098 -0.9744 -0.3242 25 1 3.0093 0.2077 1.0066 26 1 1.6903 -2.0185 -2.5196 27 1 4.1925 2.8418 -1.0092 28 1 3.6895 2.3432 0.6237 29 1 1.7754 3.2034 -1.5911 30 1 2.3381 4.2612 -0.2748 31 1 0.5137 4.8162 -1.1310 32 1 -1.6648 5.9619 -1.1343 33 1 -3.8628 6.1264 1.0620 34 1 -4.0411 5.7917 -0.6771 35 1 -4.6581 4.6287 0.5209 36 1 -3.1429 3.1759 1.7371 37 1 -0.9707 2.0182 1.7383 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000799199963.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:27:36 Heat of formation + Delta-G solvation = 72.141188 kcal Electronic energy + Delta-G solvation = -19209.129596 eV Core-core repulsion = 16340.633202 eV Total energy + Delta-G solvation = -2868.496394 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.64145 -37.40827 -35.78760 -32.15168 -31.34161 -31.18781 -30.64730 -28.44826 -26.11712 -25.75242 -23.86966 -22.21747 -21.08058 -20.24576 -17.82415 -17.33648 -16.20829 -15.55782 -15.36363 -15.02158 -14.60130 -14.12842 -13.65067 -13.52748 -13.28912 -13.24225 -13.14267 -12.63945 -11.99188 -11.87215 -11.59160 -11.33982 -11.26172 -11.10280 -10.90974 -10.70661 -10.28821 -10.26370 -10.12646 -9.80764 -8.72241 -8.68178 -8.62387 -8.15727 -7.57360 -7.07226 -5.76223 -3.12095 1.65921 1.79403 3.38590 3.46049 3.47595 3.88066 4.10121 4.37083 4.59664 4.77912 5.04700 5.08935 5.25376 5.32252 5.43016 5.48324 5.63234 5.65160 5.79023 5.83567 5.97283 5.98362 6.01222 6.07596 6.15378 6.31834 6.43502 6.59092 6.62615 6.78664 6.82157 6.86809 7.16829 7.39139 7.62600 7.76309 8.07387 8.26316 9.13291 9.51790 9.80036 10.24258 11.25771 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.028117 B = 0.005408 C = 0.005331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.602362 B = 5176.339413 C = 5250.878067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.304 4.304 2 C -0.073 4.073 3 C 0.272 3.728 4 N -0.585 5.585 5 C -0.270 4.270 6 H 0.077 0.923 7 C 0.005 3.995 8 N -0.881 5.881 9 Si 0.896 3.104 10 H -0.287 1.287 11 H -0.294 1.294 12 H -0.281 1.281 13 C 0.150 3.850 14 C 0.034 3.966 15 O -0.284 6.284 16 C 0.151 3.849 17 C -0.214 4.214 18 C -0.082 4.082 19 C -0.146 4.146 20 C -0.103 4.103 21 C -0.084 4.084 22 C -0.149 4.149 23 H 0.181 0.819 24 H 0.092 0.908 25 H 0.034 0.966 26 H 0.254 0.746 27 H 0.072 0.928 28 H 0.052 0.948 29 H 0.060 0.940 30 H 0.040 0.960 31 H 0.123 0.877 32 H 0.116 0.884 33 H 0.061 0.939 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.121 0.879 37 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.238 10.400 6.181 13.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.324 4.324 2 C -0.076 4.076 3 C 0.147 3.853 4 N -0.305 5.305 5 C -0.398 4.398 6 H 0.095 0.905 7 C -0.194 4.194 8 N -0.524 5.524 9 Si 0.726 3.274 10 H -0.214 1.214 11 H -0.220 1.220 12 H -0.207 1.207 13 C 0.022 3.978 14 C -0.045 4.045 15 O -0.196 6.196 16 C 0.103 3.897 17 C -0.233 4.233 18 C -0.101 4.101 19 C -0.146 4.146 20 C -0.160 4.160 21 C -0.102 4.102 22 C -0.167 4.167 23 H 0.198 0.802 24 H 0.110 0.890 25 H 0.052 0.948 26 H 0.064 0.936 27 H 0.090 0.910 28 H 0.070 0.930 29 H 0.078 0.922 30 H 0.058 0.942 31 H 0.141 0.859 32 H 0.134 0.866 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.139 0.861 37 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -5.172 10.051 6.214 12.899 hybrid contribution -0.090 -0.208 -1.332 1.351 sum -5.261 9.843 4.882 12.182 Atomic orbital electron populations 1.23840 0.94939 1.05944 1.07636 1.23825 0.94811 0.95102 0.93843 1.17864 0.83444 0.94048 0.89947 1.44247 1.75028 1.04336 1.06885 1.19217 1.33885 1.00197 0.86499 0.90519 1.24796 0.97158 0.99026 0.98433 1.70214 1.24324 1.15552 1.42330 0.86388 0.79434 0.79226 0.82393 1.21432 1.22043 1.20672 1.21005 0.92284 0.86103 0.98394 1.23905 0.90179 0.96569 0.93817 1.86290 1.18842 1.52859 1.61600 1.19145 0.86869 0.90270 0.93377 1.21261 0.99255 0.98852 1.03884 1.20714 0.92385 0.98942 0.98023 1.19662 0.96356 0.98374 1.00213 1.20641 0.93906 0.99689 1.01747 1.20755 0.96309 0.94913 0.98259 1.20449 0.91949 1.02105 1.02237 0.80206 0.88997 0.94781 0.93557 0.90977 0.92961 0.92213 0.94168 0.85885 0.86624 0.92032 0.92182 0.92074 0.86127 0.85352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -7.27 17.62 29.55 0.52 -6.75 16 2 C -0.07 -1.82 9.34 -37.12 -0.35 -2.17 16 3 C 0.27 6.57 5.43 -6.83 -0.04 6.54 16 4 N -0.59 -14.10 2.47 -176.57 -0.44 -14.54 16 5 C -0.27 -7.12 9.69 -15.06 -0.15 -7.27 16 6 H 0.08 1.97 7.94 -52.48 -0.42 1.56 16 7 C 0.01 0.14 4.89 -17.43 -0.09 0.05 16 8 N -0.88 -25.13 9.15 55.49 0.51 -24.63 16 9 Si 0.90 21.42 29.62 -169.99 -5.04 16.39 16 10 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 13 C 0.15 2.92 6.12 -4.04 -0.02 2.89 16 14 C 0.03 0.63 5.08 37.16 0.19 0.82 16 15 O -0.28 -5.76 7.09 -19.42 -0.14 -5.90 16 16 C 0.15 2.78 6.53 -39.22 -0.26 2.53 16 17 C -0.21 -3.56 9.04 -39.43 -0.36 -3.91 16 18 C -0.08 -1.20 9.69 -39.60 -0.38 -1.59 16 19 C -0.15 -2.01 5.88 -104.60 -0.62 -2.63 16 20 C -0.10 -1.07 10.01 36.01 0.36 -0.71 16 21 C -0.08 -1.22 9.69 -39.61 -0.38 -1.60 16 22 C -0.15 -2.51 9.41 -39.43 -0.37 -2.88 16 23 H 0.18 3.84 7.80 -54.08 -0.42 3.42 16 24 H 0.09 2.42 6.33 -51.93 -0.33 2.09 16 25 H 0.03 0.74 7.88 -51.93 -0.41 0.33 16 26 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 27 H 0.07 1.28 8.03 -51.93 -0.42 0.86 16 28 H 0.05 0.93 7.89 -51.93 -0.41 0.52 16 29 H 0.06 1.24 7.67 -51.93 -0.40 0.85 16 30 H 0.04 0.63 7.65 -51.93 -0.40 0.23 16 31 H 0.12 1.93 6.30 -52.49 -0.33 1.60 16 32 H 0.12 1.40 8.06 -52.49 -0.42 0.97 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.57 8.08 -51.93 -0.42 0.15 16 35 H 0.06 0.57 8.08 -51.93 -0.42 0.15 16 36 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 37 H 0.13 2.16 7.81 -52.48 -0.41 1.75 16 LS Contribution 312.12 15.07 4.70 4.70 Total: -1.00 -30.17 312.12 -7.52 -37.68 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -5.18 Total: 2.97 kcal Atomic # 6 Polarization: -14.74 SS G_CDS: -1.94 Total: -16.68 kcal Atomic # 7 Polarization: -39.23 SS G_CDS: 0.07 Total: -39.16 kcal Atomic # 8 Polarization: -5.76 SS G_CDS: -0.14 Total: -5.90 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.04 Total: 16.39 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -30.17 -7.52 -37.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799199963.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.824 kcal (2) G-P(sol) polarization free energy of solvation -30.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.683 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds