Wall clock time and date at job start Mon Mar 30 2020 00:27:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47209 * 179.97438 * 2 1 4 4 N 1.46496 * 109.46676 * 138.38349 * 3 2 1 5 5 C 1.36938 * 120.00215 * 270.71319 * 4 3 2 6 6 H 1.08003 * 120.00315 * 187.85125 * 5 4 3 7 7 C 1.38813 * 119.99735 * 7.85586 * 5 4 3 8 8 N 1.31618 * 120.00284 * 25.66216 * 7 5 4 9 9 Si 1.86805 * 119.99951 * 205.66502 * 7 5 4 10 10 H 1.48497 * 109.47234 * 89.99766 * 9 7 5 11 11 H 1.48494 * 109.46990 * 210.00022 * 9 7 5 12 12 H 1.48503 * 109.47085 * 329.99928 * 9 7 5 13 13 C 1.46499 * 120.00175 * 90.72158 * 4 3 2 14 14 C 1.53005 * 109.46945 * 269.99457 * 13 4 3 15 15 O 1.42900 * 109.46925 * 64.99938 * 14 13 4 16 16 C 1.35897 * 117.00069 * 180.02562 * 15 14 13 17 17 C 1.38732 * 120.05287 * 359.71885 * 16 15 14 18 18 C 1.38151 * 119.94043 * 179.77322 * 17 16 15 19 19 C 1.38264 * 120.05643 * 0.50331 * 18 17 16 20 20 C 1.50701 * 119.94165 * 179.76772 * 19 18 17 21 21 C 1.38259 * 120.11295 * 359.75196 * 19 18 17 22 22 C 1.38147 * 120.05410 * 359.97438 * 21 19 18 23 23 H 4.40636 * 5.51410 * 180.02562 * 4 1 2 24 24 H 1.09000 * 109.46802 * 18.38882 * 3 2 1 25 25 H 1.08995 * 109.46953 * 258.38608 * 3 2 1 26 26 H 0.96998 * 119.99725 * 179.97438 * 8 7 5 27 27 H 1.08994 * 109.47801 * 149.99513 * 13 4 3 28 28 H 1.08996 * 109.47016 * 29.99406 * 13 4 3 29 29 H 1.08997 * 109.46979 * 304.99824 * 14 13 4 30 30 H 1.08997 * 109.47085 * 184.99396 * 14 13 4 31 31 H 1.07999 * 120.03014 * 359.97438 * 17 16 15 32 32 H 1.07998 * 119.96939 * 180.25767 * 18 17 16 33 33 H 1.08994 * 109.47171 * 269.98031 * 20 19 18 34 34 H 1.09002 * 109.47287 * 29.98671 * 20 19 18 35 35 H 1.09007 * 109.46798 * 149.98297 * 20 19 18 36 36 H 1.07998 * 119.97627 * 179.97438 * 21 19 18 37 37 H 1.08003 * 120.02841 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1338 1.0335 -0.9173 5 6 3.3483 0.7324 -2.2359 6 1 3.8257 1.4527 -2.8836 7 6 2.9518 -0.4987 -2.7400 8 7 1.9675 -1.1584 -2.1670 9 14 3.8154 -1.2193 -4.2315 10 1 4.9626 -2.0502 -3.7858 11 1 2.8616 -2.0618 -4.9966 12 1 4.3085 -0.1184 -5.0977 13 6 3.3924 2.3885 -0.4241 14 6 2.1223 3.2311 -0.5582 15 8 1.1082 2.7037 0.2993 16 6 -0.0922 3.3408 0.2998 17 6 -0.2880 4.4544 -0.5042 18 6 -1.5106 5.0975 -0.5055 19 6 -2.5354 4.6386 0.3013 20 6 -3.8664 5.3453 0.3018 21 6 -2.3411 3.5322 1.1074 22 6 -1.1221 2.8822 1.1081 23 1 -1.0501 -0.0001 0.0003 24 1 3.0098 -0.9744 -0.3242 25 1 3.0093 0.2077 1.0066 26 1 1.6903 -2.0185 -2.5196 27 1 4.1925 2.8418 -1.0092 28 1 3.6895 2.3432 0.6237 29 1 1.7754 3.2034 -1.5911 30 1 2.3381 4.2612 -0.2748 31 1 0.5137 4.8162 -1.1310 32 1 -1.6648 5.9619 -1.1343 33 1 -3.8628 6.1264 1.0620 34 1 -4.0411 5.7917 -0.6771 35 1 -4.6581 4.6287 0.5209 36 1 -3.1429 3.1759 1.7371 37 1 -0.9707 2.0182 1.7383 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000799199963.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:27:35 Heat of formation + Delta-G solvation = 57.030234 kcal Electronic energy + Delta-G solvation = -19209.784856 eV Core-core repulsion = 16340.633202 eV Total energy + Delta-G solvation = -2869.151655 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.92259 -38.77533 -37.52346 -33.72826 -33.24816 -32.54724 -31.86429 -30.10474 -27.90675 -27.00341 -25.47671 -23.62725 -22.44730 -21.68406 -19.41896 -19.00535 -18.06243 -17.14834 -16.79800 -16.35701 -16.13976 -15.53916 -15.21422 -15.10277 -14.87959 -14.38964 -14.31668 -14.12126 -13.45844 -13.35887 -12.94876 -12.93424 -12.71034 -12.68855 -12.33365 -12.28821 -12.14355 -11.89675 -11.55677 -11.41507 -10.67101 -10.54484 -10.08794 -9.87023 -9.01614 -8.81330 -7.80332 -5.15914 0.46555 0.59508 1.48216 1.51336 1.58006 2.41615 2.57565 2.66750 2.86588 2.90216 3.28660 3.79937 3.93408 4.03520 4.15265 4.22516 4.32708 4.42546 4.50530 4.52337 4.55047 4.67629 4.89211 4.91644 4.93594 4.96902 5.10319 5.15376 5.24957 5.42500 5.46363 5.55551 5.66672 5.74258 5.79888 6.02328 6.27166 6.72390 7.12051 7.61645 7.86599 8.27799 9.20204 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.028117 B = 0.005408 C = 0.005331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.602362 B = 5176.339413 C = 5250.878067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.304 4.304 2 C -0.095 4.095 3 C 0.274 3.726 4 N -0.598 5.598 5 C -0.269 4.269 6 H 0.081 0.919 7 C -0.047 4.047 8 N -0.910 5.910 9 Si 0.957 3.043 10 H -0.286 1.286 11 H -0.305 1.305 12 H -0.272 1.272 13 C 0.145 3.855 14 C 0.043 3.957 15 O -0.308 6.308 16 C 0.116 3.884 17 C -0.226 4.226 18 C -0.088 4.088 19 C -0.142 4.142 20 C -0.102 4.102 21 C -0.086 4.086 22 C -0.164 4.164 23 H 0.199 0.801 24 H 0.065 0.935 25 H 0.057 0.943 26 H 0.244 0.756 27 H 0.090 0.910 28 H 0.070 0.930 29 H 0.031 0.969 30 H 0.072 0.928 31 H 0.125 0.875 32 H 0.142 0.858 33 H 0.078 0.922 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.148 0.852 37 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.097 12.243 6.298 15.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.324 4.324 2 C -0.098 4.098 3 C 0.149 3.851 4 N -0.318 5.318 5 C -0.398 4.398 6 H 0.099 0.901 7 C -0.243 4.243 8 N -0.555 5.555 9 Si 0.786 3.214 10 H -0.213 1.213 11 H -0.233 1.233 12 H -0.197 1.197 13 C 0.018 3.982 14 C -0.035 4.035 15 O -0.221 6.221 16 C 0.070 3.930 17 C -0.245 4.245 18 C -0.106 4.106 19 C -0.142 4.142 20 C -0.158 4.158 21 C -0.103 4.103 22 C -0.183 4.183 23 H 0.216 0.784 24 H 0.083 0.917 25 H 0.075 0.925 26 H 0.054 0.946 27 H 0.108 0.892 28 H 0.089 0.911 29 H 0.050 0.950 30 H 0.090 0.910 31 H 0.143 0.857 32 H 0.160 0.840 33 H 0.096 0.904 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.166 0.834 37 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -6.015 11.936 6.339 14.793 hybrid contribution 0.097 -0.664 -1.309 1.471 sum -5.918 11.272 5.031 13.689 Atomic orbital electron populations 1.24332 0.95624 1.05303 1.07092 1.24166 0.95487 0.95743 0.94403 1.17769 0.83285 0.93111 0.90943 1.44410 1.75042 1.06218 1.06156 1.19539 1.32583 1.00138 0.87581 0.90079 1.25449 0.97947 0.99687 1.01230 1.70377 1.25834 1.15393 1.43932 0.85427 0.77960 0.78358 0.79647 1.21299 1.23292 1.19651 1.21252 0.93106 0.84173 0.99633 1.23690 0.89486 0.98013 0.92315 1.86231 1.19799 1.54053 1.62011 1.19443 0.86757 0.91572 0.95217 1.21419 1.00441 0.98743 1.03848 1.21085 0.91709 0.99475 0.98300 1.20144 0.97675 0.97727 0.98647 1.20713 0.91930 1.00132 1.03046 1.21108 0.95968 0.94807 0.98457 1.20573 0.92804 1.02439 1.02440 0.78362 0.91690 0.92510 0.94604 0.89160 0.91139 0.95019 0.90964 0.85704 0.84025 0.90376 0.91058 0.90878 0.83434 0.86210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -14.71 17.62 74.32 1.31 -13.40 16 2 C -0.10 -4.82 9.34 31.13 0.29 -4.53 16 3 C 0.27 13.43 5.43 84.58 0.46 13.89 16 4 N -0.60 -28.80 2.47 -712.56 -1.76 -30.57 16 5 C -0.27 -14.23 9.69 84.03 0.81 -13.42 16 6 H 0.08 4.13 7.94 -2.91 -0.02 4.10 16 7 C -0.05 -2.58 4.89 84.86 0.41 -2.17 16 8 N -0.91 -53.08 9.15 21.65 0.20 -52.88 16 9 Si 0.96 44.65 29.62 68.60 2.03 46.68 16 10 H -0.29 -13.15 7.11 99.48 0.71 -12.45 16 11 H -0.31 -14.72 7.11 99.48 0.71 -14.02 16 12 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 13 C 0.14 5.48 6.12 86.38 0.53 6.00 16 14 C 0.04 1.58 5.08 71.98 0.37 1.95 16 15 O -0.31 -12.53 7.09 -92.39 -0.66 -13.18 16 16 C 0.12 4.28 6.53 22.51 0.15 4.43 16 17 C -0.23 -7.33 9.04 22.37 0.20 -7.13 16 18 C -0.09 -2.36 9.69 22.26 0.22 -2.15 16 19 C -0.14 -3.52 5.88 -19.85 -0.12 -3.64 16 20 C -0.10 -1.71 10.01 71.24 0.71 -0.99 16 21 C -0.09 -2.30 9.69 22.25 0.22 -2.09 16 22 C -0.16 -5.47 9.41 22.37 0.21 -5.26 16 23 H 0.20 8.47 7.80 -4.41 -0.03 8.43 16 24 H 0.07 3.52 6.33 -2.39 -0.02 3.51 16 25 H 0.06 2.45 7.88 -2.39 -0.02 2.43 16 26 H 0.24 14.16 8.31 -92.71 -0.77 13.38 16 27 H 0.09 3.05 8.03 -2.39 -0.02 3.03 16 28 H 0.07 2.40 7.89 -2.39 -0.02 2.39 16 29 H 0.03 1.33 7.67 -2.39 -0.02 1.31 16 30 H 0.07 2.17 7.65 -2.39 -0.02 2.15 16 31 H 0.13 3.86 6.30 -2.91 -0.02 3.84 16 32 H 0.14 2.99 8.06 -2.91 -0.02 2.96 16 33 H 0.08 1.10 8.14 -2.39 -0.02 1.09 16 34 H 0.07 1.07 8.08 -2.39 -0.02 1.05 16 35 H 0.07 1.08 8.08 -2.38 -0.02 1.06 16 36 H 0.15 3.06 8.06 -2.91 -0.02 3.04 16 37 H 0.12 4.08 7.81 -2.91 -0.02 4.06 16 Total: -1.00 -65.09 312.12 6.62 -58.47 By element: Atomic # 1 Polarization: 18.94 SS G_CDS: 1.04 Total: 19.98 kcal Atomic # 6 Polarization: -34.27 SS G_CDS: 5.77 Total: -28.49 kcal Atomic # 7 Polarization: -81.88 SS G_CDS: -1.56 Total: -83.45 kcal Atomic # 8 Polarization: -12.53 SS G_CDS: -0.66 Total: -13.18 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -65.09 6.62 -58.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799199963.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.496 kcal (2) G-P(sol) polarization free energy of solvation -65.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds