Wall clock time and date at job start Sun Mar 29 2020 23:25:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47109 * 2 1 4 4 N 1.46505 * 109.47113 * 119.99828 * 2 1 3 5 5 C 1.36928 * 119.99926 * 275.00118 * 4 2 1 6 6 H 1.08003 * 120.00490 * 359.97438 * 5 4 2 7 7 C 1.38814 * 119.99804 * 179.97438 * 5 4 2 8 8 N 1.31618 * 120.00298 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 120.00124 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46859 * 60.00225 * 9 7 5 11 11 H 1.48497 * 109.47411 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47290 * 300.00086 * 9 7 5 13 13 C 1.50699 * 109.47248 * 239.99962 * 2 1 3 14 14 C 1.38330 * 119.94285 * 279.99817 * 13 2 1 15 15 C 1.38292 * 120.24058 * 179.97438 * 14 13 2 16 16 C 1.38055 * 120.11393 * 0.02562 * 15 14 13 17 17 C 1.39271 * 119.88127 * 359.97438 * 16 15 14 18 18 C 1.48469 * 120.11730 * 179.97438 * 17 16 15 19 19 N 1.34044 * 126.67356 * 179.68680 * 18 17 16 20 20 N 1.28987 * 107.26916 * 179.83434 * 19 18 17 21 21 N 1.28735 * 108.94013 * 0.43503 * 20 19 18 22 22 H 0.97001 * 125.33851 * 179.71507 * 21 20 19 23 23 N 1.28866 * 109.31668 * 359.72617 * 21 20 19 24 24 C 1.38004 * 119.93876 * 99.97905 * 13 2 1 25 25 H 1.08997 * 109.47514 * 299.99528 * 1 2 3 26 26 H 1.08997 * 109.47385 * 60.00543 * 1 2 3 27 27 H 1.09004 * 109.46853 * 179.97438 * 1 2 3 28 28 H 0.96999 * 119.99595 * 95.00080 * 4 2 1 29 29 H 0.97004 * 120.00331 * 180.02562 * 8 7 5 30 30 H 1.08007 * 119.88015 * 359.95797 * 14 13 2 31 31 H 1.07997 * 119.94435 * 180.02562 * 15 14 13 32 32 H 1.08001 * 120.05763 * 179.70068 * 16 15 14 33 33 H 1.08000 * 120.06231 * 0.04098 * 24 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1491 -0.0075 2.3757 6 1 1.8926 1.0406 2.4242 7 6 2.6113 -0.6620 3.5093 8 7 2.9243 -1.9390 3.4502 9 14 2.7904 0.2701 5.1182 10 1 1.4683 0.8078 5.5285 11 1 3.2992 -0.6483 6.1684 12 1 3.7464 1.3918 4.9368 13 6 2.0323 -0.7104 -1.2304 14 6 2.0663 -2.0929 -1.2640 15 6 2.5256 -2.7511 -2.3902 16 6 2.9535 -2.0307 -3.4874 17 6 2.9214 -0.6386 -3.4589 18 6 3.3808 0.1414 -4.6357 19 7 3.4015 1.4765 -4.7527 20 7 3.8717 1.7512 -5.9219 21 7 4.1338 0.6505 -6.5360 22 1 4.4941 0.5811 -7.4340 23 7 3.8422 -0.3444 -5.7708 24 6 2.4573 0.0195 -2.3219 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 2.2490 -1.6317 1.1526 29 1 3.2470 -2.3965 4.2424 30 1 1.7331 -2.6603 -0.4075 31 1 2.5497 -3.8306 -2.4114 32 1 3.3165 -2.5456 -4.3645 33 1 2.4307 1.0988 -2.2945 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000824553731.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:25:03 Heat of formation + Delta-G solvation = 136.461260 kcal Electronic energy + Delta-G solvation = -18148.024508 eV Core-core repulsion = 15211.069649 eV Total energy + Delta-G solvation = -2936.954859 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 259.113 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -45.44557 -40.46319 -37.21089 -35.38992 -34.66589 -33.93350 -31.79465 -31.15286 -29.65227 -26.10148 -25.81346 -25.41064 -23.68198 -22.97570 -21.07157 -20.05594 -19.36063 -18.12426 -17.66444 -16.76012 -16.52581 -15.92894 -15.56424 -15.16173 -14.84451 -14.51935 -14.39505 -13.96665 -13.62031 -13.36063 -13.16715 -12.88987 -12.71242 -12.48559 -12.38162 -12.27751 -12.21289 -12.12351 -11.84162 -11.61917 -11.50718 -10.96370 -9.73784 -9.53784 -8.99200 -7.90596 -5.18595 -0.24827 0.20452 0.47190 1.35875 1.44436 1.50305 1.52893 1.58615 2.58676 2.68088 2.88804 3.17959 3.43804 3.88983 3.98173 4.09441 4.14648 4.26718 4.43109 4.49785 4.57076 4.66141 4.80406 4.94962 5.05482 5.10221 5.21771 5.41813 5.48517 5.54326 5.56682 5.65189 5.78340 5.99348 6.31709 7.13181 7.38480 8.12199 8.37630 9.32731 Molecular weight = 259.11amu Principal moments of inertia in cm(-1) A = 0.031239 B = 0.004302 C = 0.004116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.090891 B = 6507.752371 C = 6801.212222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.202 3.798 3 H 0.051 0.949 4 N -0.733 5.733 5 C -0.241 4.241 6 H 0.076 0.924 7 C -0.073 4.073 8 N -0.968 5.968 9 Si 0.970 3.030 10 H -0.278 1.278 11 H -0.296 1.296 12 H -0.280 1.280 13 C -0.084 4.084 14 C -0.096 4.096 15 C -0.114 4.114 16 C -0.081 4.081 17 C -0.032 4.032 18 C 0.216 3.784 19 N -0.297 5.297 20 N -0.058 5.058 21 N -0.199 5.199 22 H 0.495 0.505 23 N -0.291 5.291 24 C -0.078 4.078 25 H 0.043 0.957 26 H 0.066 0.934 27 H 0.046 0.954 28 H 0.376 0.624 29 H 0.251 0.749 30 H 0.117 0.883 31 H 0.156 0.844 32 H 0.152 0.848 33 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.381 0.948 -21.291 21.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.094 3.906 3 H 0.069 0.931 4 N -0.375 5.375 5 C -0.372 4.372 6 H 0.094 0.906 7 C -0.265 4.265 8 N -0.619 5.619 9 Si 0.799 3.201 10 H -0.204 1.204 11 H -0.222 1.222 12 H -0.207 1.207 13 C -0.085 4.085 14 C -0.115 4.115 15 C -0.132 4.132 16 C -0.101 4.101 17 C -0.035 4.035 18 C -0.064 4.064 19 N -0.169 5.169 20 N -0.052 5.052 21 N -0.050 5.050 22 H 0.354 0.646 23 N -0.144 5.144 24 C -0.099 4.099 25 H 0.063 0.937 26 H 0.085 0.915 27 H 0.065 0.935 28 H 0.210 0.790 29 H 0.059 0.941 30 H 0.135 0.865 31 H 0.174 0.826 32 H 0.170 0.830 33 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 0.517 1.680 -21.530 21.602 hybrid contribution 0.365 -0.324 0.918 1.040 sum 0.882 1.357 -20.613 20.676 Atomic orbital electron populations 1.22255 0.96521 1.01223 1.00868 1.19352 0.93192 0.94573 0.83513 0.93050 1.42677 1.78554 1.10483 1.05758 1.19596 1.35117 0.94310 0.88211 0.90643 1.25486 1.02880 0.96880 1.01245 1.69796 1.52578 1.10111 1.29428 0.85263 0.77938 0.77317 0.79558 1.20393 1.22241 1.20665 1.20113 0.98791 0.94433 0.95161 1.21282 0.97804 0.94034 0.98408 1.21319 0.98420 1.01436 0.92014 1.21292 0.97911 0.91463 0.99478 1.17267 1.04176 0.92556 0.89544 1.23714 1.00359 0.88485 0.93836 1.76109 1.17590 1.13669 1.09580 1.78847 1.12667 1.12495 1.01237 1.47774 1.39687 1.00018 1.17543 0.64593 1.74869 1.19335 1.17041 1.03139 1.20972 0.97056 1.00408 0.91454 0.93743 0.91461 0.93506 0.78994 0.94064 0.86514 0.82603 0.82986 0.85075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.35 9.47 71.98 0.68 -4.67 16 2 C 0.20 8.16 3.09 44.24 0.14 8.29 16 3 H 0.05 2.12 7.94 -2.39 -0.02 2.10 16 4 N -0.73 -36.98 5.07 -326.50 -1.66 -38.63 16 5 C -0.24 -13.38 9.93 84.04 0.83 -12.55 16 6 H 0.08 4.03 7.83 -2.91 -0.02 4.01 16 7 C -0.07 -4.17 5.50 84.86 0.47 -3.70 16 8 N -0.97 -58.99 13.06 21.65 0.28 -58.70 16 9 Si 0.97 46.31 29.55 68.60 2.03 48.33 16 10 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 11 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 12 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 13 C -0.08 -2.95 4.95 -19.90 -0.10 -3.05 16 14 C -0.10 -3.15 9.05 22.30 0.20 -2.94 16 15 C -0.11 -2.94 10.03 22.24 0.22 -2.71 16 16 C -0.08 -1.99 9.70 22.47 0.22 -1.77 16 17 C -0.03 -0.90 5.88 -20.04 -0.12 -1.02 16 18 C 0.22 5.72 7.94 137.38 1.09 6.81 16 19 N -0.30 -8.31 12.23 -52.18 -0.64 -8.95 16 20 N -0.06 -1.27 13.47 37.02 0.50 -0.77 16 21 N -0.20 -3.03 7.90 37.02 0.29 -2.73 16 22 H 0.49 2.05 8.96 -347.54 -3.12 -1.06 16 23 N -0.29 -6.08 12.08 -52.13 -0.63 -6.71 16 24 C -0.08 -2.48 9.32 22.48 0.21 -2.27 16 25 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 26 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 27 H 0.05 1.67 8.14 -2.38 -0.02 1.66 16 28 H 0.38 19.99 6.06 -92.71 -0.56 19.43 16 29 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 30 H 0.12 4.15 6.91 -2.91 -0.02 4.13 16 31 H 0.16 3.05 8.06 -2.91 -0.02 3.02 16 32 H 0.15 2.92 7.88 -2.91 -0.02 2.89 16 33 H 0.13 4.09 7.86 -2.91 -0.02 4.06 16 Total: -1.00 -69.12 293.77 1.51 -67.62 By element: Atomic # 1 Polarization: 22.65 SS G_CDS: -2.52 Total: 20.13 kcal Atomic # 6 Polarization: -23.43 SS G_CDS: 3.85 Total: -19.59 kcal Atomic # 7 Polarization: -114.65 SS G_CDS: -1.85 Total: -116.50 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 2.03 Total: 48.33 kcal Total: -69.12 1.51 -67.62 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824553731.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 204.077 kcal (2) G-P(sol) polarization free energy of solvation -69.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 136.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds