Wall clock time and date at job start Sun Mar 29 2020 23:44:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 119.99981 * 2 1 4 4 H 1.48498 * 109.47274 * 270.00403 * 3 2 1 5 5 H 1.48505 * 109.47002 * 29.99888 * 3 2 1 6 6 H 1.48495 * 109.47185 * 149.99817 * 3 2 1 7 7 C 1.37874 * 119.99994 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00117 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00112 * 0.02562 * 7 2 1 10 10 N 1.46493 * 109.47358 * 179.97438 * 9 7 2 11 11 C 1.34772 * 120.00388 * 179.97438 * 10 9 7 12 12 O 1.21613 * 120.00063 * 0.02562 * 11 10 9 13 13 C 1.47106 * 120.00510 * 180.27337 * 11 10 9 14 14 C 1.32991 * 120.00601 * 186.49753 * 13 11 10 15 15 C 1.50700 * 119.99660 * 15.18648 * 14 13 11 16 16 C 1.52992 * 109.47555 * 135.73276 * 15 14 13 17 17 C 1.50700 * 109.47822 * 179.97438 * 16 15 14 18 18 C 1.38234 * 120.00092 * 269.73196 * 17 16 15 19 19 C 1.38236 * 120.00228 * 179.76073 * 18 17 16 20 20 C 1.38239 * 119.99477 * 0.50431 * 19 18 17 21 21 C 1.38228 * 120.00225 * 359.74616 * 20 19 18 22 22 C 1.38233 * 119.99900 * 89.99363 * 17 16 15 23 23 H 0.97004 * 120.00228 * 359.97438 * 1 2 3 24 24 H 1.09005 * 109.46903 * 60.00006 * 9 7 2 25 25 H 1.09000 * 109.47128 * 299.99818 * 9 7 2 26 26 H 0.97006 * 120.00270 * 0.02562 * 10 9 7 27 27 H 1.08000 * 119.99283 * 6.50035 * 13 11 10 28 28 H 1.07992 * 120.00414 * 195.17527 * 14 13 11 29 29 H 1.09000 * 109.46755 * 255.73319 * 15 14 13 30 30 H 1.09001 * 109.47420 * 15.73137 * 15 14 13 31 31 H 1.09000 * 109.47124 * 299.99817 * 16 15 14 32 32 H 1.09001 * 109.46870 * 59.99524 * 16 15 14 33 33 H 1.08003 * 119.99934 * 359.97438 * 18 17 16 34 34 H 1.07995 * 120.00421 * 180.22891 * 19 18 17 35 35 H 1.07997 * 119.99675 * 179.72369 * 20 19 18 36 36 H 1.07997 * 120.00160 * 179.97438 * 21 20 19 37 37 H 1.08001 * 120.00036 * 0.02562 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2030 -3.6126 0.0005 11 6 1.7538 -4.8833 0.0011 12 8 0.5582 -5.1056 0.0011 13 6 2.7097 -6.0014 0.0071 14 6 2.2726 -7.2508 -0.1227 15 6 0.8717 -7.5117 -0.6128 16 6 0.8954 -8.6360 -1.6502 17 6 -0.5056 -8.8974 -2.1400 18 6 -1.3001 -9.8282 -1.4971 19 6 -2.5870 -10.0645 -1.9433 20 6 -3.0757 -9.3775 -3.0388 21 6 -2.2795 -8.4505 -3.6848 22 6 -0.9944 -8.2104 -3.2354 23 1 -0.4851 0.8401 0.0004 24 1 0.6248 -2.5570 -0.8897 25 1 0.6241 -2.5567 0.8903 26 1 3.1567 -3.4354 0.0009 27 1 3.7665 -5.8077 0.1171 28 1 2.9217 -8.0782 0.1230 29 1 0.2418 -7.8055 0.2269 30 1 0.4712 -6.6058 -1.0679 31 1 1.5252 -8.3423 -2.4899 32 1 1.2958 -9.5419 -1.1951 33 1 -0.9166 -10.3684 -0.6441 34 1 -3.2090 -10.7890 -1.4388 35 1 -4.0795 -9.5653 -3.3901 36 1 -2.6611 -7.9140 -4.5409 37 1 -0.3721 -7.4865 -3.7405 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000867873578.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:44:59 Heat of formation + Delta-G solvation = -9.498651 kcal Electronic energy + Delta-G solvation = -17826.336579 eV Core-core repulsion = 14954.300015 eV Total energy + Delta-G solvation = -2872.036563 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.39068 -38.86705 -35.31825 -34.02476 -32.41115 -32.18861 -30.88045 -28.85770 -27.18842 -24.26303 -22.83836 -22.57091 -20.98939 -20.73022 -19.09881 -16.82511 -16.69258 -15.91065 -15.36615 -15.27507 -14.96381 -14.53034 -14.16608 -13.85115 -13.50382 -13.31848 -13.23971 -12.72520 -12.54399 -11.95172 -11.90143 -11.86397 -11.66216 -11.17030 -10.97052 -10.89546 -10.81405 -10.64259 -10.26315 -9.38016 -9.10760 -8.91157 -8.80969 -8.69909 -8.58897 -7.79489 -6.15439 -4.22263 1.35015 1.40884 1.74760 3.24869 3.30927 3.33487 3.78785 3.97263 4.20365 4.43108 4.74252 4.82869 4.99029 5.10155 5.20608 5.21126 5.30393 5.33457 5.51990 5.58489 5.61670 5.69818 5.77564 6.00118 6.05976 6.18052 6.36847 6.47318 6.51257 6.59534 6.67072 6.90197 7.02223 7.35282 7.49192 7.53939 7.69924 7.98923 8.67432 8.80422 9.15187 9.44574 10.94786 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.026464 B = 0.003522 C = 0.003219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.798266 B = 7948.950878 C = 8696.256627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.543 4.543 8 H 0.063 0.937 9 C 0.249 3.751 10 N -0.708 5.708 11 C 0.523 3.477 12 O -0.552 6.552 13 C -0.212 4.212 14 C -0.078 4.078 15 C -0.107 4.107 16 C -0.079 4.079 17 C -0.074 4.074 18 C -0.119 4.119 19 C -0.121 4.121 20 C -0.129 4.129 21 C -0.118 4.118 22 C -0.114 4.114 23 H 0.266 0.734 24 H 0.027 0.973 25 H 0.027 0.973 26 H 0.391 0.609 27 H 0.122 0.878 28 H 0.118 0.882 29 H 0.076 0.924 30 H 0.112 0.888 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.119 0.881 34 H 0.119 0.881 35 H 0.118 0.882 36 H 0.120 0.880 37 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.469 -19.034 -4.362 19.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.581 4.581 8 H 0.081 0.919 9 C 0.128 3.872 10 N -0.355 5.355 11 C 0.311 3.689 12 O -0.434 6.434 13 C -0.233 4.233 14 C -0.098 4.098 15 C -0.144 4.144 16 C -0.116 4.116 17 C -0.074 4.074 18 C -0.137 4.137 19 C -0.139 4.139 20 C -0.148 4.148 21 C -0.136 4.136 22 C -0.132 4.132 23 H 0.075 0.925 24 H 0.045 0.955 25 H 0.045 0.955 26 H 0.223 0.777 27 H 0.140 0.860 28 H 0.135 0.865 29 H 0.094 0.906 30 H 0.130 0.870 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.137 0.863 34 H 0.137 0.863 35 H 0.136 0.864 36 H 0.138 0.862 37 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 0.447 -18.999 -4.356 19.497 hybrid contribution 0.951 1.079 0.087 1.441 sum 1.399 -17.920 -4.269 18.474 Atomic orbital electron populations 1.69980 1.06101 1.27270 1.48957 1.24956 0.94917 0.99451 0.94723 0.86416 0.79625 0.82661 0.78212 1.20463 1.21003 1.19754 1.21237 0.93265 0.90512 1.53135 0.91922 1.19100 0.88362 0.82039 0.97716 1.46430 1.11076 1.06260 1.71706 1.18618 0.88524 0.83725 0.78077 1.90673 1.16756 1.84574 1.51375 1.22844 0.99436 0.93944 1.07033 1.23552 0.97567 0.96023 0.92636 1.21193 0.94347 1.00415 0.98410 1.20649 0.92661 0.99056 0.99225 1.19907 0.96406 0.95831 0.95245 1.21031 0.94310 0.98575 0.99820 1.21106 0.95779 1.00011 0.97032 1.21110 0.99682 0.97364 0.96598 1.21156 0.94316 0.98051 1.00064 1.21115 0.96059 0.99236 0.96748 0.92465 0.95524 0.95513 0.77684 0.85980 0.86459 0.90602 0.86983 0.91102 0.91417 0.86256 0.86342 0.86392 0.86163 0.86006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.31 13.29 55.43 0.74 -25.58 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 20.99 29.54 -169.99 -5.02 15.96 16 4 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.54 -14.91 9.28 -34.44 -0.32 -15.23 16 8 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 9 C 0.25 6.69 5.43 -5.20 -0.03 6.66 16 10 N -0.71 -15.25 5.54 -62.68 -0.35 -15.59 16 11 C 0.52 10.65 7.53 -12.66 -0.10 10.55 16 12 O -0.55 -13.10 13.38 5.27 0.07 -13.03 16 13 C -0.21 -3.15 10.00 -37.80 -0.38 -3.53 16 14 C -0.08 -1.01 9.56 -36.13 -0.35 -1.35 16 15 C -0.11 -1.53 4.53 -27.89 -0.13 -1.66 16 16 C -0.08 -0.89 5.33 -27.89 -0.15 -1.04 16 17 C -0.07 -0.92 5.13 -104.63 -0.54 -1.46 16 18 C -0.12 -1.37 9.70 -39.58 -0.38 -1.76 16 19 C -0.12 -1.31 10.05 -39.58 -0.40 -1.71 16 20 C -0.13 -1.42 10.05 -39.58 -0.40 -1.82 16 21 C -0.12 -1.39 10.05 -39.58 -0.40 -1.78 16 22 C -0.11 -1.45 9.70 -39.58 -0.38 -1.83 16 23 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 24 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 26 H 0.39 7.23 8.30 -40.82 -0.34 6.89 16 27 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 28 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 29 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.11 2.04 5.33 -51.93 -0.28 1.76 16 31 H 0.07 0.77 8.09 -51.93 -0.42 0.35 16 32 H 0.07 0.64 8.08 -51.93 -0.42 0.22 16 33 H 0.12 1.15 8.06 -52.48 -0.42 0.72 16 34 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 35 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 36 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 37 H 0.12 1.47 8.06 -52.49 -0.42 1.04 16 LS Contribution 321.41 15.07 4.84 4.84 Total: -1.00 -32.24 321.41 -8.97 -41.21 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -5.22 Total: 6.46 kcal Atomic # 6 Polarization: -10.25 SS G_CDS: -4.04 Total: -14.28 kcal Atomic # 7 Polarization: -41.56 SS G_CDS: 0.39 Total: -41.17 kcal Atomic # 8 Polarization: -13.10 SS G_CDS: 0.07 Total: -13.03 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -32.24 -8.97 -41.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867873578.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.716 kcal (2) G-P(sol) polarization free energy of solvation -32.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds