Wall clock time and date at job start Sun Mar 29 2020 23:44:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 119.99981 * 2 1 4 4 H 1.48498 * 109.47274 * 270.00403 * 3 2 1 5 5 H 1.48505 * 109.47002 * 29.99888 * 3 2 1 6 6 H 1.48495 * 109.47185 * 149.99817 * 3 2 1 7 7 C 1.37874 * 119.99994 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00117 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00112 * 0.02562 * 7 2 1 10 10 N 1.46493 * 109.47358 * 179.97438 * 9 7 2 11 11 C 1.34772 * 120.00388 * 179.97438 * 10 9 7 12 12 O 1.21613 * 120.00063 * 0.02562 * 11 10 9 13 13 C 1.47106 * 120.00510 * 180.27337 * 11 10 9 14 14 C 1.32991 * 120.00601 * 186.49753 * 13 11 10 15 15 C 1.50700 * 119.99660 * 15.18648 * 14 13 11 16 16 C 1.52992 * 109.47555 * 135.73276 * 15 14 13 17 17 C 1.50700 * 109.47822 * 179.97438 * 16 15 14 18 18 C 1.38234 * 120.00092 * 269.73196 * 17 16 15 19 19 C 1.38236 * 120.00228 * 179.76073 * 18 17 16 20 20 C 1.38239 * 119.99477 * 0.50431 * 19 18 17 21 21 C 1.38228 * 120.00225 * 359.74616 * 20 19 18 22 22 C 1.38233 * 119.99900 * 89.99363 * 17 16 15 23 23 H 0.97004 * 120.00228 * 359.97438 * 1 2 3 24 24 H 1.09005 * 109.46903 * 60.00006 * 9 7 2 25 25 H 1.09000 * 109.47128 * 299.99818 * 9 7 2 26 26 H 0.97006 * 120.00270 * 0.02562 * 10 9 7 27 27 H 1.08000 * 119.99283 * 6.50035 * 13 11 10 28 28 H 1.07992 * 120.00414 * 195.17527 * 14 13 11 29 29 H 1.09000 * 109.46755 * 255.73319 * 15 14 13 30 30 H 1.09001 * 109.47420 * 15.73137 * 15 14 13 31 31 H 1.09000 * 109.47124 * 299.99817 * 16 15 14 32 32 H 1.09001 * 109.46870 * 59.99524 * 16 15 14 33 33 H 1.08003 * 119.99934 * 359.97438 * 18 17 16 34 34 H 1.07995 * 120.00421 * 180.22891 * 19 18 17 35 35 H 1.07997 * 119.99675 * 179.72369 * 20 19 18 36 36 H 1.07997 * 120.00160 * 179.97438 * 21 20 19 37 37 H 1.08001 * 120.00036 * 0.02562 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2030 -3.6126 0.0005 11 6 1.7538 -4.8833 0.0011 12 8 0.5582 -5.1056 0.0011 13 6 2.7097 -6.0014 0.0071 14 6 2.2726 -7.2508 -0.1227 15 6 0.8717 -7.5117 -0.6128 16 6 0.8954 -8.6360 -1.6502 17 6 -0.5056 -8.8974 -2.1400 18 6 -1.3001 -9.8282 -1.4971 19 6 -2.5870 -10.0645 -1.9433 20 6 -3.0757 -9.3775 -3.0388 21 6 -2.2795 -8.4505 -3.6848 22 6 -0.9944 -8.2104 -3.2354 23 1 -0.4851 0.8401 0.0004 24 1 0.6248 -2.5570 -0.8897 25 1 0.6241 -2.5567 0.8903 26 1 3.1567 -3.4354 0.0009 27 1 3.7665 -5.8077 0.1171 28 1 2.9217 -8.0782 0.1230 29 1 0.2418 -7.8055 0.2269 30 1 0.4712 -6.6058 -1.0679 31 1 1.5252 -8.3423 -2.4899 32 1 1.2958 -9.5419 -1.1951 33 1 -0.9166 -10.3684 -0.6441 34 1 -3.2090 -10.7890 -1.4388 35 1 -4.0795 -9.5653 -3.3901 36 1 -2.6611 -7.9140 -4.5409 37 1 -0.3721 -7.4865 -3.7405 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867873578.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:44:59 Heat of formation + Delta-G solvation = -29.321566 kcal Electronic energy + Delta-G solvation = -17827.196165 eV Core-core repulsion = 14954.300015 eV Total energy + Delta-G solvation = -2872.896150 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.69347 -40.07917 -36.66708 -35.76159 -34.34702 -33.34824 -31.75334 -30.16040 -28.97251 -25.66647 -24.46167 -23.45331 -22.49435 -21.74011 -20.69631 -18.57800 -17.64405 -17.49001 -16.98057 -16.49720 -16.14275 -15.97162 -15.77743 -15.28993 -14.62506 -14.41261 -14.23267 -14.10937 -13.89670 -13.81990 -13.61435 -13.04412 -12.81694 -12.72868 -12.66099 -12.25085 -12.11729 -11.76122 -11.64330 -11.48987 -10.81319 -10.48924 -10.19117 -9.81022 -9.68029 -9.54818 -8.30261 -6.47248 0.40804 0.51068 0.57858 1.41967 1.44787 1.56102 2.33500 2.43648 2.73257 2.89586 3.04486 3.80066 3.96395 4.07054 4.16486 4.25000 4.31958 4.34217 4.46856 4.65663 4.67942 4.71312 4.80263 5.02394 5.08554 5.18459 5.22589 5.23148 5.28528 5.44213 5.47895 5.58917 5.62991 5.72865 5.76288 5.80179 5.87902 6.15746 6.64309 6.97294 7.22584 7.54569 8.82087 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.026464 B = 0.003522 C = 0.003219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.798266 B = 7948.950878 C = 8696.256627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.987 3.013 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.255 1.255 7 C -0.557 4.557 8 H 0.083 0.917 9 C 0.267 3.733 10 N -0.707 5.707 11 C 0.514 3.486 12 O -0.596 6.596 13 C -0.229 4.229 14 C -0.046 4.046 15 C -0.109 4.109 16 C -0.068 4.068 17 C -0.093 4.093 18 C -0.128 4.128 19 C -0.127 4.127 20 C -0.137 4.137 21 C -0.134 4.134 22 C -0.140 4.140 23 H 0.269 0.731 24 H -0.015 1.015 25 H -0.015 1.015 26 H 0.407 0.593 27 H 0.162 0.838 28 H 0.172 0.828 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.075 0.925 32 H 0.098 0.902 33 H 0.140 0.860 34 H 0.144 0.856 35 H 0.141 0.859 36 H 0.132 0.868 37 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.759 -20.411 -4.031 21.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.197 4.197 3 Si 0.809 3.191 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.179 1.179 7 C -0.595 4.595 8 H 0.101 0.899 9 C 0.144 3.856 10 N -0.356 5.356 11 C 0.305 3.695 12 O -0.481 6.481 13 C -0.250 4.250 14 C -0.065 4.065 15 C -0.146 4.146 16 C -0.105 4.105 17 C -0.093 4.093 18 C -0.146 4.146 19 C -0.145 4.145 20 C -0.155 4.155 21 C -0.152 4.152 22 C -0.158 4.158 23 H 0.078 0.922 24 H 0.003 0.997 25 H 0.003 0.997 26 H 0.243 0.757 27 H 0.180 0.820 28 H 0.189 0.811 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.093 0.907 32 H 0.117 0.883 33 H 0.158 0.842 34 H 0.162 0.838 35 H 0.158 0.842 36 H 0.149 0.851 37 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 2.783 -20.409 -4.028 20.988 hybrid contribution 0.103 1.374 -0.039 1.379 sum 2.887 -19.034 -4.068 19.677 Atomic orbital electron populations 1.70148 1.08323 1.28575 1.49981 1.26102 0.95803 1.04009 0.93803 0.85132 0.78483 0.76810 0.78640 1.19536 1.20876 1.17862 1.21630 0.94297 0.90634 1.52917 0.89853 1.18505 0.88747 0.84536 0.93842 1.46179 1.11049 1.05714 1.72628 1.19668 0.89080 0.84445 0.76327 1.90672 1.19223 1.85205 1.52958 1.22779 0.99936 0.92082 1.10168 1.24003 0.96893 0.96796 0.88825 1.21084 0.95273 0.99606 0.98668 1.20584 0.92420 0.98989 0.98519 1.20153 0.97349 0.96356 0.95445 1.21353 0.94598 0.98402 1.00260 1.21497 0.95952 1.00174 0.96881 1.21458 1.00611 0.96839 0.96571 1.21424 0.94276 0.98668 1.00788 1.21300 0.96848 0.99890 0.97733 0.92241 0.99720 0.99673 0.75692 0.82047 0.81120 0.91468 0.91536 0.90676 0.88326 0.84227 0.83806 0.84162 0.85055 0.86610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.30 13.29 21.45 0.28 -57.01 16 2 C 0.00 0.13 5.46 84.65 0.46 0.59 16 3 Si 0.99 42.94 29.54 68.60 2.03 44.96 16 4 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 5 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 6 H -0.25 -10.30 7.11 99.48 0.71 -9.59 16 7 C -0.56 -31.09 9.28 25.60 0.24 -30.85 16 8 H 0.08 4.20 7.60 -2.91 -0.02 4.18 16 9 C 0.27 15.17 5.43 85.63 0.46 15.64 16 10 N -0.71 -31.31 5.54 -470.46 -2.61 -33.91 16 11 C 0.51 21.46 7.53 86.57 0.65 22.11 16 12 O -0.60 -30.05 13.38 -4.07 -0.05 -30.10 16 13 C -0.23 -6.34 10.00 23.43 0.23 -6.11 16 14 C -0.05 -1.04 9.56 24.52 0.23 -0.81 16 15 C -0.11 -3.06 4.53 29.85 0.14 -2.93 16 16 C -0.07 -1.44 5.33 29.85 0.16 -1.28 16 17 C -0.09 -2.29 5.13 -19.87 -0.10 -2.39 16 18 C -0.13 -2.78 9.70 22.27 0.22 -2.56 16 19 C -0.13 -2.58 10.05 22.27 0.22 -2.35 16 20 C -0.14 -2.90 10.05 22.27 0.22 -2.67 16 21 C -0.13 -3.20 10.05 22.27 0.22 -2.98 16 22 C -0.14 -3.70 9.70 22.27 0.22 -3.49 16 23 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 24 H -0.02 -0.97 8.14 -2.38 -0.02 -0.99 16 25 H -0.01 -0.94 8.14 -2.39 -0.02 -0.96 16 26 H 0.41 14.93 8.30 -92.70 -0.77 14.16 16 27 H 0.16 3.19 8.06 -2.91 -0.02 3.17 16 28 H 0.17 2.22 8.06 -2.91 -0.02 2.19 16 29 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.07 2.54 5.33 -2.39 -0.01 2.53 16 31 H 0.07 1.52 8.09 -2.39 -0.02 1.50 16 32 H 0.10 1.49 8.08 -2.39 -0.02 1.47 16 33 H 0.14 2.34 8.06 -2.91 -0.02 2.32 16 34 H 0.14 2.09 8.06 -2.91 -0.02 2.07 16 35 H 0.14 2.23 8.06 -2.91 -0.02 2.20 16 36 H 0.13 2.67 8.06 -2.91 -0.02 2.65 16 37 H 0.12 3.03 8.06 -2.91 -0.02 3.01 16 Total: -1.00 -75.27 321.41 3.51 -71.76 By element: Atomic # 1 Polarization: 24.10 SS G_CDS: 0.28 Total: 24.39 kcal Atomic # 6 Polarization: -23.66 SS G_CDS: 3.58 Total: -20.08 kcal Atomic # 7 Polarization: -88.60 SS G_CDS: -2.32 Total: -90.93 kcal Atomic # 8 Polarization: -30.05 SS G_CDS: -0.05 Total: -30.10 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.96 kcal Total: -75.27 3.51 -71.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867873578.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.438 kcal (2) G-P(sol) polarization free energy of solvation -75.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds