Wall clock time and date at job start Mon Mar 30 2020 00:05:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52994 * 109.25410 * 2 1 4 4 C 1.50600 * 109.25551 * 119.47721 * 2 1 3 5 5 C 1.33106 * 120.03065 * 89.06495 * 4 2 1 6 6 C 1.47904 * 118.08305 * 0.59776 * 5 4 2 7 7 C 1.39181 * 121.47944 * 196.34159 * 6 5 4 8 8 C 1.38119 * 119.68118 * 180.02562 * 7 6 5 9 9 C 1.38385 * 120.36801 * 359.97438 * 8 7 6 10 10 C 1.38880 * 120.45259 * 0.02986 * 9 8 7 11 11 N 1.39990 * 120.15552 * 179.97438 * 10 9 8 12 12 C 1.46499 * 119.99964 * 0.02562 * 11 10 9 13 13 C 1.50701 * 109.46992 * 179.97438 * 12 11 10 14 14 H 1.07998 * 120.00129 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99861 * 179.97438 * 13 12 11 16 16 N 1.31510 * 119.99913 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99734 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47294 * 60.00559 * 17 15 13 19 19 H 1.48503 * 109.46954 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47431 * 300.00157 * 17 15 13 21 21 C 1.38863 * 119.68886 * 0.23375 * 10 9 8 22 22 O 1.35843 * 121.40194 * 180.29587 * 21 10 9 23 23 H 1.09000 * 109.47624 * 300.52326 * 1 2 3 24 24 H 1.09001 * 109.47014 * 60.52412 * 1 2 3 25 25 H 1.09004 * 109.47603 * 180.52626 * 1 2 3 26 26 H 1.08998 * 109.47292 * 179.47596 * 3 2 1 27 27 H 1.08998 * 109.47246 * 299.47582 * 3 2 1 28 28 H 1.08998 * 109.47510 * 59.47790 * 3 2 1 29 29 H 1.07999 * 119.97916 * 269.08773 * 4 2 1 30 30 H 1.08004 * 120.95568 * 180.56746 * 5 4 2 31 31 H 1.07999 * 120.15876 * 359.97438 * 7 6 5 32 32 H 1.07992 * 119.81686 * 180.02562 * 8 7 6 33 33 H 1.07999 * 119.77287 * 180.02562 * 9 8 7 34 34 H 0.97000 * 119.99616 * 179.97438 * 11 10 9 35 35 H 1.09002 * 109.47391 * 59.99625 * 12 11 10 36 36 H 1.09001 * 109.46813 * 299.99682 * 12 11 10 37 37 H 0.97002 * 119.99768 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0345 1.4444 0.0000 4 6 2.0266 -0.6996 1.2377 5 6 2.2285 -2.0152 1.2236 6 6 1.9644 -2.7467 -0.0345 7 6 1.8228 -4.1311 -0.0542 8 6 1.5772 -4.7765 -1.2504 9 6 1.4712 -4.0544 -2.4261 10 6 1.6108 -2.6726 -2.4184 11 7 1.5029 -1.9483 -3.6115 12 6 1.2415 -2.6477 -4.8719 13 6 1.1712 -1.6469 -5.9965 14 1 1.3079 -0.5951 -5.7927 15 6 0.9333 -2.0741 -7.2856 16 7 0.7672 -3.3549 -7.5338 17 14 0.8468 -0.8337 -8.6796 18 1 2.1377 -0.1058 -8.7754 19 1 0.5817 -1.5426 -9.9573 20 1 -0.2484 0.1336 -8.4143 21 6 1.8633 -2.0135 -1.2226 22 8 2.0001 -0.6628 -1.1740 23 1 -0.3634 0.5219 0.8852 24 1 -0.3633 0.5057 -0.8947 25 1 -0.3634 -1.0276 0.0094 26 1 3.1244 1.4485 0.0094 27 1 1.6769 1.9541 -0.8946 28 1 1.6616 1.9595 0.8852 29 1 2.2186 -0.1336 2.1372 30 1 2.5757 -2.5334 2.1053 31 1 1.9053 -4.6981 0.8613 32 1 1.4665 -5.8506 -1.2681 33 1 1.2786 -4.5688 -3.3559 34 1 1.6004 -0.9832 -3.6034 35 1 0.2939 -3.1817 -4.8015 36 1 2.0452 -3.3578 -5.0668 37 1 0.5995 -3.6554 -8.4407 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000872224969.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:05:43 Heat of formation + Delta-G solvation = -3.627649 kcal Electronic energy + Delta-G solvation = -19085.591292 eV Core-core repulsion = 16213.809314 eV Total energy + Delta-G solvation = -2871.781978 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.51563 -37.67512 -35.24414 -33.95561 -32.64050 -32.06359 -28.95970 -28.27589 -27.29063 -26.15395 -23.44823 -22.35879 -22.11313 -20.83159 -18.29899 -17.62845 -16.75721 -15.93994 -15.41782 -14.92214 -14.64701 -14.36146 -14.25445 -13.76282 -13.39272 -13.04161 -12.81525 -12.63389 -12.28336 -12.22201 -12.08669 -11.90037 -11.60196 -11.34662 -11.06595 -10.94011 -10.89182 -10.73416 -10.27073 -10.03928 -9.84215 -9.38165 -9.18910 -8.49844 -7.62758 -6.40321 -6.18665 -4.23297 1.21501 2.07189 2.70017 3.26153 3.30347 3.32761 3.62685 4.26812 4.39310 4.55941 4.66947 4.83273 4.99627 5.10308 5.18559 5.32027 5.52432 5.57038 5.57885 5.65350 5.77990 5.79387 5.92529 6.02306 6.19269 6.19680 6.29028 6.39009 6.55652 6.72468 6.90774 7.07562 7.13964 7.32919 7.44963 7.61079 7.83826 7.98816 8.35063 8.71494 8.95062 9.42828 10.92019 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.023269 B = 0.005530 C = 0.004622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.017531 B = 5062.188156 C = 6056.048999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.149 3.851 3 C -0.135 4.135 4 C -0.195 4.195 5 C -0.087 4.087 6 C -0.094 4.094 7 C -0.159 4.159 8 C -0.094 4.094 9 C -0.177 4.177 10 C 0.220 3.780 11 N -0.723 5.723 12 C 0.252 3.748 13 C -0.538 4.538 14 H 0.062 0.938 15 C 0.064 3.936 16 N -0.890 5.890 17 Si 0.904 3.096 18 H -0.275 1.275 19 H -0.285 1.285 20 H -0.275 1.275 21 C 0.036 3.964 22 O -0.305 6.305 23 H 0.066 0.934 24 H 0.067 0.933 25 H 0.061 0.939 26 H 0.064 0.936 27 H 0.068 0.932 28 H 0.073 0.927 29 H 0.123 0.877 30 H 0.126 0.874 31 H 0.115 0.885 32 H 0.118 0.882 33 H 0.131 0.869 34 H 0.396 0.604 35 H 0.020 0.980 36 H 0.021 0.979 37 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.039 3.654 16.715 17.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.111 3.889 3 C -0.192 4.192 4 C -0.213 4.213 5 C -0.105 4.105 6 C -0.095 4.095 7 C -0.180 4.180 8 C -0.113 4.113 9 C -0.201 4.201 10 C 0.111 3.889 11 N -0.346 5.346 12 C 0.131 3.869 13 C -0.576 4.576 14 H 0.080 0.920 15 C -0.139 4.139 16 N -0.528 5.528 17 Si 0.731 3.269 18 H -0.200 1.200 19 H -0.211 1.211 20 H -0.201 1.201 21 C -0.012 4.012 22 O -0.220 6.220 23 H 0.085 0.915 24 H 0.086 0.914 25 H 0.080 0.920 26 H 0.083 0.917 27 H 0.087 0.913 28 H 0.092 0.908 29 H 0.141 0.859 30 H 0.144 0.856 31 H 0.133 0.867 32 H 0.136 0.864 33 H 0.149 0.851 34 H 0.230 0.770 35 H 0.038 0.962 36 H 0.038 0.962 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.029 3.563 16.164 16.584 hybrid contribution -0.075 0.755 -0.559 0.942 sum 0.954 4.318 15.605 16.219 Atomic orbital electron populations 1.22380 0.94870 1.03024 1.02493 1.20483 0.93437 0.92131 0.82858 1.21769 1.02064 0.92579 1.02791 1.23808 1.03091 0.95649 0.98775 1.21792 0.98650 0.94085 0.95982 1.18767 1.04703 0.93854 0.92178 1.20507 1.07361 0.92330 0.97758 1.20738 0.99526 0.99126 0.91881 1.20713 1.08650 0.91425 0.99330 1.17532 0.94328 0.91434 0.85636 1.45430 1.75420 1.09075 1.04713 1.19107 0.95768 0.93172 0.78862 1.21165 1.50707 0.93665 0.92044 0.92027 1.24916 0.94733 0.95514 0.98754 1.69934 1.47833 1.13788 1.21243 0.86472 0.78723 0.80933 0.80800 1.20050 1.21051 1.20082 1.18290 1.07903 0.82348 0.92688 1.85991 1.79146 1.16910 1.39967 0.91541 0.91411 0.92031 0.91673 0.91293 0.90799 0.85877 0.85629 0.86744 0.86439 0.85073 0.76960 0.96216 0.96160 0.92441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.23 8.52 37.16 0.32 -1.92 16 2 C 0.15 2.06 1.08 -91.83 -0.10 1.96 16 3 C -0.13 -1.49 8.79 37.15 0.33 -1.17 16 4 C -0.19 -2.44 8.74 -36.14 -0.32 -2.75 16 5 C -0.09 -1.17 10.08 -37.41 -0.38 -1.55 16 6 C -0.09 -1.54 5.77 -104.94 -0.61 -2.15 16 7 C -0.16 -2.43 9.85 -39.27 -0.39 -2.82 16 8 C -0.09 -1.52 10.03 -39.57 -0.40 -1.92 16 9 C -0.18 -3.43 9.31 -39.29 -0.37 -3.79 16 10 C 0.22 4.55 6.66 -83.66 -0.56 3.99 16 11 N -0.72 -16.36 5.73 -59.74 -0.34 -16.70 16 12 C 0.25 6.54 4.67 -5.19 -0.02 6.51 16 13 C -0.54 -14.85 9.28 -34.44 -0.32 -15.17 16 14 H 0.06 1.65 7.60 -52.49 -0.40 1.25 16 15 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 16 N -0.89 -25.75 13.29 55.43 0.74 -25.01 16 17 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 16 18 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 19 H -0.29 -6.58 7.11 56.52 0.40 -6.17 16 20 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 21 C 0.04 0.68 5.87 -38.70 -0.23 0.46 16 22 O -0.30 -5.45 9.10 -19.25 -0.18 -5.62 16 23 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 25 H 0.06 0.91 7.78 -51.93 -0.40 0.50 16 26 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 30 H 0.13 1.34 8.06 -52.48 -0.42 0.92 16 31 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 32 H 0.12 1.57 8.06 -52.49 -0.42 1.15 16 33 H 0.13 2.64 6.73 -52.49 -0.35 2.28 16 34 H 0.40 8.79 7.76 -40.82 -0.32 8.47 16 35 H 0.02 0.55 7.95 -51.93 -0.41 0.13 16 36 H 0.02 0.56 7.95 -51.93 -0.41 0.15 16 37 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 310.11 15.07 4.67 4.67 Total: -1.00 -29.60 310.11 -8.50 -38.10 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: -5.24 Total: 7.08 kcal Atomic # 6 Polarization: -15.50 SS G_CDS: -3.13 Total: -18.63 kcal Atomic # 7 Polarization: -42.11 SS G_CDS: 0.39 Total: -41.71 kcal Atomic # 8 Polarization: -5.45 SS G_CDS: -0.18 Total: -5.62 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -29.60 -8.50 -38.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872224969.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.470 kcal (2) G-P(sol) polarization free energy of solvation -29.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds