Wall clock time and date at job start Mon Mar 30 2020 00:05:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52994 * 109.25410 * 2 1 4 4 C 1.50600 * 109.25551 * 119.47721 * 2 1 3 5 5 C 1.33106 * 120.03065 * 89.06495 * 4 2 1 6 6 C 1.47904 * 118.08305 * 0.59776 * 5 4 2 7 7 C 1.39181 * 121.47944 * 196.34159 * 6 5 4 8 8 C 1.38119 * 119.68118 * 180.02562 * 7 6 5 9 9 C 1.38385 * 120.36801 * 359.97438 * 8 7 6 10 10 C 1.38880 * 120.45259 * 0.02986 * 9 8 7 11 11 N 1.39990 * 120.15552 * 179.97438 * 10 9 8 12 12 C 1.46499 * 119.99964 * 0.02562 * 11 10 9 13 13 C 1.50701 * 109.46992 * 179.97438 * 12 11 10 14 14 H 1.07998 * 120.00129 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99861 * 179.97438 * 13 12 11 16 16 N 1.31510 * 119.99913 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99734 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47294 * 60.00559 * 17 15 13 19 19 H 1.48503 * 109.46954 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47431 * 300.00157 * 17 15 13 21 21 C 1.38863 * 119.68886 * 0.23375 * 10 9 8 22 22 O 1.35843 * 121.40194 * 180.29587 * 21 10 9 23 23 H 1.09000 * 109.47624 * 300.52326 * 1 2 3 24 24 H 1.09001 * 109.47014 * 60.52412 * 1 2 3 25 25 H 1.09004 * 109.47603 * 180.52626 * 1 2 3 26 26 H 1.08998 * 109.47292 * 179.47596 * 3 2 1 27 27 H 1.08998 * 109.47246 * 299.47582 * 3 2 1 28 28 H 1.08998 * 109.47510 * 59.47790 * 3 2 1 29 29 H 1.07999 * 119.97916 * 269.08773 * 4 2 1 30 30 H 1.08004 * 120.95568 * 180.56746 * 5 4 2 31 31 H 1.07999 * 120.15876 * 359.97438 * 7 6 5 32 32 H 1.07992 * 119.81686 * 180.02562 * 8 7 6 33 33 H 1.07999 * 119.77287 * 180.02562 * 9 8 7 34 34 H 0.97000 * 119.99616 * 179.97438 * 11 10 9 35 35 H 1.09002 * 109.47391 * 59.99625 * 12 11 10 36 36 H 1.09001 * 109.46813 * 299.99682 * 12 11 10 37 37 H 0.97002 * 119.99768 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0345 1.4444 0.0000 4 6 2.0266 -0.6996 1.2377 5 6 2.2285 -2.0152 1.2236 6 6 1.9644 -2.7467 -0.0345 7 6 1.8228 -4.1311 -0.0542 8 6 1.5772 -4.7765 -1.2504 9 6 1.4712 -4.0544 -2.4261 10 6 1.6108 -2.6726 -2.4184 11 7 1.5029 -1.9483 -3.6115 12 6 1.2415 -2.6477 -4.8719 13 6 1.1712 -1.6469 -5.9965 14 1 1.3079 -0.5951 -5.7927 15 6 0.9333 -2.0741 -7.2856 16 7 0.7672 -3.3549 -7.5338 17 14 0.8468 -0.8337 -8.6796 18 1 2.1377 -0.1058 -8.7754 19 1 0.5817 -1.5426 -9.9573 20 1 -0.2484 0.1336 -8.4143 21 6 1.8633 -2.0135 -1.2226 22 8 2.0001 -0.6628 -1.1740 23 1 -0.3634 0.5219 0.8852 24 1 -0.3633 0.5057 -0.8947 25 1 -0.3634 -1.0276 0.0094 26 1 3.1244 1.4485 0.0094 27 1 1.6769 1.9541 -0.8946 28 1 1.6616 1.9595 0.8852 29 1 2.2186 -0.1336 2.1372 30 1 2.5757 -2.5334 2.1053 31 1 1.9053 -4.6981 0.8613 32 1 1.4665 -5.8506 -1.2681 33 1 1.2786 -4.5688 -3.3559 34 1 1.6004 -0.9832 -3.6034 35 1 0.2939 -3.1817 -4.8015 36 1 2.0452 -3.3578 -5.0668 37 1 0.5995 -3.6554 -8.4407 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000872224969.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:05:43 Heat of formation + Delta-G solvation = -21.061106 kcal Electronic energy + Delta-G solvation = -19086.347264 eV Core-core repulsion = 16213.809314 eV Total energy + Delta-G solvation = -2872.537949 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.76885 -39.04003 -36.82236 -35.34287 -34.43148 -33.32288 -30.64937 -29.49832 -28.31333 -27.95353 -25.07512 -23.88385 -23.25539 -22.30058 -19.62516 -19.21624 -18.25785 -17.50974 -16.81657 -16.59957 -16.09420 -15.76273 -15.53477 -15.00364 -14.79873 -14.71519 -14.30497 -13.95693 -13.71420 -13.50631 -13.27359 -13.08958 -12.92757 -12.81912 -12.69702 -12.51134 -12.33022 -12.06572 -11.89019 -11.48028 -11.44995 -11.07403 -10.77800 -10.40928 -8.87368 -8.32491 -8.02767 -6.46537 -0.01119 0.70483 1.38490 1.42041 1.50345 1.51633 2.32133 2.43294 2.88096 3.00666 3.04350 3.66760 3.80417 3.96240 4.02757 4.11469 4.30121 4.49202 4.53382 4.63493 4.69147 4.73886 4.83312 4.86999 4.95880 5.10276 5.13436 5.22395 5.26310 5.27195 5.34732 5.48197 5.50298 5.68321 5.77959 5.86647 6.05870 6.36124 6.55748 6.80172 7.12237 7.26816 8.79238 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.023269 B = 0.005530 C = 0.004622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.017531 B = 5062.188156 C = 6056.048999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.129 3.871 3 C -0.131 4.131 4 C -0.179 4.179 5 C -0.106 4.106 6 C -0.099 4.099 7 C -0.144 4.144 8 C -0.093 4.093 9 C -0.199 4.199 10 C 0.181 3.819 11 N -0.734 5.734 12 C 0.277 3.723 13 C -0.560 4.560 14 H 0.065 0.935 15 C 0.011 3.989 16 N -0.925 5.925 17 Si 0.978 3.022 18 H -0.267 1.267 19 H -0.277 1.277 20 H -0.266 1.266 21 C 0.027 3.973 22 O -0.329 6.329 23 H 0.099 0.901 24 H 0.054 0.946 25 H 0.038 0.962 26 H 0.064 0.936 27 H 0.059 0.941 28 H 0.109 0.891 29 H 0.164 0.836 30 H 0.162 0.838 31 H 0.157 0.843 32 H 0.148 0.852 33 H 0.107 0.893 34 H 0.395 0.605 35 H -0.009 1.009 36 H -0.009 1.009 37 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.393 4.888 19.483 20.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.092 3.908 3 C -0.188 4.188 4 C -0.197 4.197 5 C -0.123 4.123 6 C -0.100 4.100 7 C -0.164 4.164 8 C -0.112 4.112 9 C -0.223 4.223 10 C 0.076 3.924 11 N -0.361 5.361 12 C 0.154 3.846 13 C -0.598 4.598 14 H 0.083 0.917 15 C -0.189 4.189 16 N -0.563 5.563 17 Si 0.802 3.198 18 H -0.192 1.192 19 H -0.202 1.202 20 H -0.191 1.191 21 C -0.021 4.021 22 O -0.245 6.245 23 H 0.118 0.882 24 H 0.073 0.927 25 H 0.057 0.943 26 H 0.083 0.917 27 H 0.078 0.922 28 H 0.127 0.873 29 H 0.181 0.819 30 H 0.179 0.821 31 H 0.174 0.826 32 H 0.165 0.835 33 H 0.125 0.875 34 H 0.228 0.772 35 H 0.009 0.991 36 H 0.008 0.992 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.388 4.783 18.994 19.636 hybrid contribution -0.182 0.362 -1.230 1.295 sum 1.205 5.145 17.764 18.533 Atomic orbital electron populations 1.22351 0.94642 1.01823 1.03484 1.20998 0.93896 0.93443 0.82504 1.21819 1.02048 0.90814 1.04099 1.24148 1.00805 0.95620 0.99087 1.22070 1.00117 0.94528 0.95601 1.19266 1.03257 0.94631 0.92844 1.21019 1.04420 0.92218 0.98706 1.21072 0.98523 1.00543 0.91049 1.20764 1.10135 0.91437 0.99941 1.17863 0.96670 0.92112 0.85777 1.45041 1.77869 1.08707 1.04474 1.18533 0.93117 0.92441 0.80514 1.21522 1.51186 0.94084 0.93033 0.91675 1.25907 0.93857 0.97605 1.01484 1.70065 1.48316 1.15852 1.22087 0.85309 0.79126 0.78282 0.77130 1.19182 1.20230 1.19125 1.18436 1.07714 0.83256 0.92715 1.85970 1.79510 1.16549 1.42503 0.88224 0.92701 0.94296 0.91733 0.92194 0.87270 0.81880 0.82074 0.82586 0.83467 0.87475 0.77176 0.99121 0.99155 0.92095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.13 8.52 71.98 0.61 -3.52 16 2 C 0.13 3.33 1.08 -11.57 -0.01 3.31 16 3 C -0.13 -2.57 8.79 71.98 0.63 -1.94 16 4 C -0.18 -3.76 8.74 24.50 0.21 -3.55 16 5 C -0.11 -2.44 10.08 23.68 0.24 -2.20 16 6 C -0.10 -3.08 5.77 -20.07 -0.12 -3.20 16 7 C -0.14 -4.04 9.85 22.47 0.22 -3.82 16 8 C -0.09 -2.97 10.03 22.28 0.22 -2.75 16 9 C -0.20 -8.18 9.31 22.46 0.21 -7.97 16 10 C 0.18 7.97 6.66 38.14 0.25 8.23 16 11 N -0.73 -35.91 5.73 -342.92 -1.97 -37.87 16 12 C 0.28 15.55 4.67 85.63 0.40 15.95 16 13 C -0.56 -32.47 9.28 25.60 0.24 -32.23 16 14 H 0.07 3.63 7.60 -2.91 -0.02 3.60 16 15 C 0.01 0.65 5.46 84.66 0.46 1.12 16 16 N -0.92 -55.51 13.29 21.45 0.28 -55.22 16 17 Si 0.98 44.00 29.54 68.60 2.03 46.03 16 18 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 19 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 20 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 21 C 0.03 1.04 5.87 22.84 0.13 1.17 16 22 O -0.33 -11.89 9.10 -91.79 -0.84 -12.73 16 23 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 24 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 25 H 0.04 1.13 7.78 -2.39 -0.02 1.11 16 26 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.16 2.14 8.06 -2.91 -0.02 2.12 16 30 H 0.16 2.56 8.06 -2.91 -0.02 2.53 16 31 H 0.16 3.11 8.06 -2.91 -0.02 3.09 16 32 H 0.15 3.70 8.06 -2.91 -0.02 3.68 16 33 H 0.11 4.79 6.73 -2.91 -0.02 4.77 16 34 H 0.39 18.86 7.76 -92.71 -0.72 18.14 16 35 H -0.01 -0.54 7.95 -2.39 -0.02 -0.56 16 36 H -0.01 -0.56 7.95 -2.39 -0.02 -0.58 16 37 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 Total: -1.00 -68.49 310.11 3.56 -64.92 By element: Atomic # 1 Polarization: 25.91 SS G_CDS: 0.34 Total: 26.25 kcal Atomic # 6 Polarization: -35.10 SS G_CDS: 3.71 Total: -31.39 kcal Atomic # 7 Polarization: -91.41 SS G_CDS: -1.68 Total: -93.10 kcal Atomic # 8 Polarization: -11.89 SS G_CDS: -0.84 Total: -12.73 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -68.49 3.56 -64.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872224969.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.861 kcal (2) G-P(sol) polarization free energy of solvation -68.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds