Wall clock time and date at job start Sun Mar 29 2020 23:39:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86795 * 120.00105 * 2 1 4 4 H 1.48494 * 109.47425 * 269.99725 * 3 2 1 5 5 H 1.48499 * 109.47218 * 29.99581 * 3 2 1 6 6 H 1.48505 * 109.47256 * 149.99586 * 3 2 1 7 7 C 1.38950 * 119.99926 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00299 * 180.02562 * 7 2 1 9 9 N 1.37104 * 120.00030 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99773 * 180.27703 * 9 7 2 11 11 O 1.21293 * 120.00456 * 359.71934 * 10 9 7 12 12 C 1.50698 * 119.99538 * 179.72591 * 10 9 7 13 13 C 1.52999 * 109.47004 * 179.97438 * 12 10 9 14 14 C 1.52998 * 109.47303 * 179.97438 * 13 12 10 15 15 H 1.08997 * 110.26858 * 52.93058 * 14 13 12 16 16 C 1.54353 * 110.30486 * 174.99975 * 14 13 12 17 17 C 1.54345 * 102.38976 * 92.57770 * 16 14 13 18 18 C 1.51368 * 105.17068 * 26.35228 * 17 16 14 19 19 C 1.38491 * 130.39274 * 162.81224 * 18 17 16 20 20 C 1.38113 * 120.21661 * 179.97438 * 19 18 17 21 21 C 1.38258 * 119.93137 * 0.02562 * 20 19 18 22 22 C 1.38097 * 119.93409 * 359.97438 * 21 20 19 23 23 C 1.38218 * 109.75803 * 342.80780 * 18 17 16 24 24 H 0.96999 * 119.99863 * 0.02562 * 1 2 3 25 25 H 0.97001 * 119.99681 * 359.97438 * 9 7 2 26 26 H 1.09003 * 109.47112 * 299.99065 * 12 10 9 27 27 H 1.08993 * 109.47916 * 59.99687 * 12 10 9 28 28 H 1.09000 * 109.47527 * 299.99994 * 13 12 10 29 29 H 1.09007 * 109.47302 * 59.99534 * 13 12 10 30 30 H 1.09001 * 110.82063 * 210.80813 * 16 14 13 31 31 H 1.09002 * 110.82002 * 334.35302 * 16 14 13 32 32 H 1.09007 * 110.30021 * 145.27345 * 17 16 14 33 33 H 1.08996 * 110.30649 * 267.42539 * 17 16 14 34 34 H 1.08001 * 119.89633 * 0.02562 * 19 18 17 35 35 H 1.07998 * 120.03091 * 180.02562 * 20 19 18 36 36 H 1.07999 * 120.02864 * 179.97438 * 21 20 19 37 37 H 1.07996 * 119.88977 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0464 -1.4000 5 1 1.4456 2.6527 0.6999 6 1 3.5457 1.4401 0.7001 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3233 -2.3907 0.0005 10 6 1.9973 -3.5579 0.0067 11 8 3.2102 -3.5580 0.0071 12 6 1.2437 -4.8629 0.0129 13 6 2.2379 -6.0258 0.0186 14 6 1.4729 -7.3508 0.0256 15 1 0.7501 -7.3738 -0.7900 16 6 2.4539 -8.5364 -0.0949 17 6 2.7264 -8.8921 1.3821 18 6 1.4953 -8.4331 2.1337 19 6 1.0413 -8.7641 3.3996 20 6 -0.1279 -8.2120 3.8850 21 6 -0.8484 -7.3263 3.1053 22 6 -0.3972 -6.9950 1.8428 23 6 0.7751 -7.5476 1.3543 24 1 -0.4850 0.8400 -0.0004 25 1 0.3533 -2.3906 0.0005 26 1 0.6167 -4.9162 0.9030 27 1 0.6174 -4.9252 -0.8769 28 1 2.8646 -5.9725 -0.8716 29 1 2.8646 -5.9638 0.9083 30 1 1.9883 -9.3732 -0.6155 31 1 3.3724 -8.2299 -0.5954 32 1 2.8584 -9.9683 1.4938 33 1 3.6086 -8.3627 1.7421 34 1 1.6037 -9.4556 4.0095 35 1 -0.4790 -8.4719 4.8728 36 1 -1.7630 -6.8939 3.4832 37 1 -0.9603 -6.3028 1.2345 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879173318.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:39:36 Heat of formation + Delta-G solvation = -35.732177 kcal Electronic energy + Delta-G solvation = -18627.994554 eV Core-core repulsion = 15754.820419 eV Total energy + Delta-G solvation = -2873.174135 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.27916 -38.13082 -36.10085 -33.97245 -32.70276 -31.17449 -30.44358 -28.95446 -27.20972 -24.92444 -22.86112 -22.46586 -20.86582 -19.90046 -18.97510 -17.77500 -16.36277 -15.76470 -15.46002 -15.11771 -14.77840 -14.51873 -14.44744 -13.88891 -13.23233 -13.15590 -12.81415 -12.58773 -12.29007 -12.07819 -11.61508 -11.56543 -11.48541 -11.19910 -11.01193 -10.87829 -10.62002 -10.55601 -10.36660 -10.16962 -10.15414 -9.48099 -8.72950 -8.43101 -8.32349 -7.93106 -6.38516 -3.79155 1.43408 1.46369 3.19724 3.27922 3.34176 3.82520 3.97751 4.20230 4.42487 4.57195 4.88912 5.03303 5.06067 5.11726 5.18801 5.28514 5.36276 5.57768 5.61333 5.64924 5.67504 5.73139 5.84943 5.95756 6.02784 6.05775 6.11314 6.23043 6.23987 6.49698 6.54570 6.56288 6.63155 6.71911 6.79442 7.08149 7.58078 8.09870 8.65038 9.21179 9.59418 10.11105 10.79355 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.028450 B = 0.004386 C = 0.004037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.932873 B = 6381.775307 C = 6934.552948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.929 3.071 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.300 4.300 8 H 0.102 0.898 9 N -0.565 5.565 10 C 0.441 3.559 11 O -0.599 6.599 12 C -0.133 4.133 13 C -0.083 4.083 14 C -0.054 4.054 15 H 0.079 0.921 16 C -0.116 4.116 17 C -0.081 4.081 18 C -0.098 4.098 19 C -0.112 4.112 20 C -0.125 4.125 21 C -0.122 4.122 22 C -0.104 4.104 23 C -0.081 4.081 24 H 0.271 0.729 25 H 0.392 0.608 26 H 0.077 0.923 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.070 0.930 33 H 0.081 0.919 34 H 0.116 0.884 35 H 0.120 0.880 36 H 0.122 0.878 37 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.111 -17.281 3.377 17.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.180 4.180 3 Si 0.756 3.244 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.430 4.430 8 H 0.120 0.880 9 N -0.200 5.200 10 C 0.227 3.773 11 O -0.484 6.484 12 C -0.173 4.173 13 C -0.121 4.121 14 C -0.072 4.072 15 H 0.098 0.902 16 C -0.154 4.154 17 C -0.118 4.118 18 C -0.098 4.098 19 C -0.130 4.130 20 C -0.143 4.143 21 C -0.140 4.140 22 C -0.122 4.122 23 C -0.081 4.081 24 H 0.081 0.919 25 H 0.226 0.774 26 H 0.096 0.904 27 H 0.093 0.907 28 H 0.091 0.909 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.098 0.902 32 H 0.089 0.911 33 H 0.099 0.901 34 H 0.134 0.866 35 H 0.138 0.862 36 H 0.140 0.860 37 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -1.430 -17.103 3.378 17.492 hybrid contribution -0.378 0.994 0.149 1.074 sum -1.809 -16.109 3.527 16.590 Atomic orbital electron populations 1.69616 1.05929 1.28083 1.50755 1.25255 0.95621 0.99687 0.97387 0.85871 0.79248 0.80881 0.78368 1.20417 1.20929 1.19443 1.19725 0.93370 0.82430 1.47478 0.88012 1.41929 1.09204 1.04738 1.64158 1.20018 0.88287 0.85114 0.83847 1.90500 1.14131 1.87539 1.56275 1.21561 0.99067 0.94076 1.02644 1.21222 0.97038 0.90408 1.03396 1.20814 0.96510 0.95832 0.94070 0.90237 1.22355 0.99672 0.97444 0.95894 1.21050 0.95568 1.00816 0.94408 1.20620 0.96823 0.97976 0.94423 1.20576 0.96743 1.00798 0.94881 1.20989 0.95545 0.98125 0.99658 1.21043 1.00132 0.98395 0.94384 1.20738 0.95836 0.99614 0.96047 1.20600 0.94519 0.96293 0.96702 0.91918 0.77432 0.90433 0.90690 0.90931 0.91366 0.91173 0.90167 0.91103 0.90112 0.86643 0.86240 0.86019 0.85986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.99 13.05 55.50 0.72 -24.26 16 2 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 21.39 29.55 -169.99 -5.02 16.36 16 4 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 6 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.30 -8.59 9.68 -14.93 -0.14 -8.74 16 8 H 0.10 3.05 7.16 -52.49 -0.38 2.67 16 9 N -0.56 -14.78 5.29 -10.96 -0.06 -14.84 16 10 C 0.44 10.75 7.78 -10.99 -0.09 10.66 16 11 O -0.60 -16.67 15.56 5.55 0.09 -16.58 16 12 C -0.13 -2.41 5.53 -27.88 -0.15 -2.56 16 13 C -0.08 -1.34 3.89 -26.73 -0.10 -1.45 16 14 C -0.05 -0.70 2.89 -90.74 -0.26 -0.96 16 15 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 16 C -0.12 -1.26 6.60 -25.32 -0.17 -1.42 16 17 C -0.08 -0.89 6.76 -26.85 -0.18 -1.07 16 18 C -0.10 -1.26 6.14 -104.21 -0.64 -1.90 16 19 C -0.11 -1.32 10.04 -39.53 -0.40 -1.72 16 20 C -0.13 -1.43 10.05 -39.62 -0.40 -1.83 16 21 C -0.12 -1.47 10.05 -39.63 -0.40 -1.87 16 22 C -0.10 -1.38 8.77 -39.54 -0.35 -1.73 16 23 C -0.08 -1.10 5.13 -104.21 -0.53 -1.64 16 24 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 25 H 0.39 9.82 7.90 -40.82 -0.32 9.49 16 26 H 0.08 1.33 6.02 -51.93 -0.31 1.02 16 27 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 28 H 0.07 1.21 8.05 -51.93 -0.42 0.79 16 29 H 0.07 1.23 8.09 -51.93 -0.42 0.81 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.08 0.83 7.86 -51.93 -0.41 0.42 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 35 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 36 H 0.12 1.23 8.06 -52.49 -0.42 0.80 16 37 H 0.12 1.51 7.53 -52.49 -0.40 1.11 16 LS Contribution 309.37 15.07 4.66 4.66 Total: -1.00 -31.91 309.37 -8.69 -40.60 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: -5.17 Total: 9.79 kcal Atomic # 6 Polarization: -11.82 SS G_CDS: -3.91 Total: -15.73 kcal Atomic # 7 Polarization: -39.77 SS G_CDS: 0.67 Total: -39.10 kcal Atomic # 8 Polarization: -16.67 SS G_CDS: 0.09 Total: -16.58 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -31.91 -8.69 -40.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879173318.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.863 kcal (2) G-P(sol) polarization free energy of solvation -31.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds