Wall clock time and date at job start Sun Mar 29 2020 23:39:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86795 * 120.00105 * 2 1 4 4 H 1.48494 * 109.47425 * 269.99725 * 3 2 1 5 5 H 1.48499 * 109.47218 * 29.99581 * 3 2 1 6 6 H 1.48505 * 109.47256 * 149.99586 * 3 2 1 7 7 C 1.38950 * 119.99926 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00299 * 180.02562 * 7 2 1 9 9 N 1.37104 * 120.00030 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99773 * 180.27703 * 9 7 2 11 11 O 1.21293 * 120.00456 * 359.71934 * 10 9 7 12 12 C 1.50698 * 119.99538 * 179.72591 * 10 9 7 13 13 C 1.52999 * 109.47004 * 179.97438 * 12 10 9 14 14 C 1.52998 * 109.47303 * 179.97438 * 13 12 10 15 15 H 1.08997 * 110.26858 * 52.93058 * 14 13 12 16 16 C 1.54353 * 110.30486 * 174.99975 * 14 13 12 17 17 C 1.54345 * 102.38976 * 92.57770 * 16 14 13 18 18 C 1.51368 * 105.17068 * 26.35228 * 17 16 14 19 19 C 1.38491 * 130.39274 * 162.81224 * 18 17 16 20 20 C 1.38113 * 120.21661 * 179.97438 * 19 18 17 21 21 C 1.38258 * 119.93137 * 0.02562 * 20 19 18 22 22 C 1.38097 * 119.93409 * 359.97438 * 21 20 19 23 23 C 1.38218 * 109.75803 * 342.80780 * 18 17 16 24 24 H 0.96999 * 119.99863 * 0.02562 * 1 2 3 25 25 H 0.97001 * 119.99681 * 359.97438 * 9 7 2 26 26 H 1.09003 * 109.47112 * 299.99065 * 12 10 9 27 27 H 1.08993 * 109.47916 * 59.99687 * 12 10 9 28 28 H 1.09000 * 109.47527 * 299.99994 * 13 12 10 29 29 H 1.09007 * 109.47302 * 59.99534 * 13 12 10 30 30 H 1.09001 * 110.82063 * 210.80813 * 16 14 13 31 31 H 1.09002 * 110.82002 * 334.35302 * 16 14 13 32 32 H 1.09007 * 110.30021 * 145.27345 * 17 16 14 33 33 H 1.08996 * 110.30649 * 267.42539 * 17 16 14 34 34 H 1.08001 * 119.89633 * 0.02562 * 19 18 17 35 35 H 1.07998 * 120.03091 * 180.02562 * 20 19 18 36 36 H 1.07999 * 120.02864 * 179.97438 * 21 20 19 37 37 H 1.07996 * 119.88977 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0464 -1.4000 5 1 1.4456 2.6527 0.6999 6 1 3.5457 1.4401 0.7001 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3233 -2.3907 0.0005 10 6 1.9973 -3.5579 0.0067 11 8 3.2102 -3.5580 0.0071 12 6 1.2437 -4.8629 0.0129 13 6 2.2379 -6.0258 0.0186 14 6 1.4729 -7.3508 0.0256 15 1 0.7501 -7.3738 -0.7900 16 6 2.4539 -8.5364 -0.0949 17 6 2.7264 -8.8921 1.3821 18 6 1.4953 -8.4331 2.1337 19 6 1.0413 -8.7641 3.3996 20 6 -0.1279 -8.2120 3.8850 21 6 -0.8484 -7.3263 3.1053 22 6 -0.3972 -6.9950 1.8428 23 6 0.7751 -7.5476 1.3543 24 1 -0.4850 0.8400 -0.0004 25 1 0.3533 -2.3906 0.0005 26 1 0.6167 -4.9162 0.9030 27 1 0.6174 -4.9252 -0.8769 28 1 2.8646 -5.9725 -0.8716 29 1 2.8646 -5.9638 0.9083 30 1 1.9883 -9.3732 -0.6155 31 1 3.3724 -8.2299 -0.5954 32 1 2.8584 -9.9683 1.4938 33 1 3.6086 -8.3627 1.7421 34 1 1.6037 -9.4556 4.0095 35 1 -0.4790 -8.4719 4.8728 36 1 -1.7630 -6.8939 3.4832 37 1 -0.9603 -6.3028 1.2345 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879173318.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:39:36 Heat of formation + Delta-G solvation = -53.802463 kcal Electronic energy + Delta-G solvation = -18628.778140 eV Core-core repulsion = 15754.820419 eV Total energy + Delta-G solvation = -2873.957721 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.25971 -40.04699 -37.11565 -36.01390 -33.97895 -33.22512 -31.54894 -29.88205 -28.47696 -26.75062 -24.19007 -23.46342 -21.80766 -20.95922 -20.82495 -19.85026 -17.71299 -17.25645 -16.55071 -16.46732 -16.22583 -15.86504 -15.75856 -15.60798 -14.63537 -14.50888 -14.01532 -13.69277 -13.62747 -13.38565 -13.16760 -12.93681 -12.87328 -12.47686 -12.42868 -12.29821 -12.13681 -11.86921 -11.61639 -11.58369 -11.53256 -11.32694 -10.35685 -10.03802 -9.65890 -9.36423 -8.48475 -5.97876 0.50607 0.53166 1.36683 1.40137 1.53364 2.03744 2.29063 2.89086 3.18871 3.21061 3.53167 3.65630 4.05909 4.09067 4.19580 4.23987 4.28635 4.36632 4.40749 4.55778 4.67329 4.73365 4.81540 4.83696 4.87673 4.97757 5.12627 5.18657 5.20693 5.28893 5.38740 5.39437 5.43293 5.62680 5.67139 5.82272 5.98274 6.18332 6.56926 7.09826 7.53944 8.09299 8.69035 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.028450 B = 0.004386 C = 0.004037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.932873 B = 6381.775307 C = 6934.552948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.012 4.012 3 Si 0.994 3.006 4 H -0.269 1.269 5 H -0.269 1.269 6 H -0.273 1.273 7 C -0.339 4.339 8 H 0.078 0.922 9 N -0.574 5.574 10 C 0.435 3.565 11 O -0.638 6.638 12 C -0.120 4.120 13 C -0.074 4.074 14 C -0.048 4.048 15 H 0.091 0.909 16 C -0.113 4.113 17 C -0.081 4.081 18 C -0.112 4.112 19 C -0.121 4.121 20 C -0.128 4.128 21 C -0.133 4.133 22 C -0.123 4.123 23 C -0.103 4.103 24 H 0.278 0.722 25 H 0.396 0.604 26 H 0.090 0.910 27 H 0.100 0.900 28 H 0.064 0.936 29 H 0.043 0.957 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.092 0.908 33 H 0.073 0.927 34 H 0.136 0.864 35 H 0.144 0.856 36 H 0.138 0.862 37 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.762 -18.053 3.656 18.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.212 4.212 3 Si 0.817 3.183 4 H -0.194 1.194 5 H -0.194 1.194 6 H -0.198 1.198 7 C -0.468 4.468 8 H 0.096 0.904 9 N -0.210 5.210 10 C 0.223 3.777 11 O -0.526 6.526 12 C -0.160 4.160 13 C -0.112 4.112 14 C -0.066 4.066 15 H 0.110 0.890 16 C -0.150 4.150 17 C -0.118 4.118 18 C -0.112 4.112 19 C -0.139 4.139 20 C -0.146 4.146 21 C -0.151 4.151 22 C -0.141 4.141 23 C -0.103 4.103 24 H 0.088 0.912 25 H 0.230 0.770 26 H 0.108 0.892 27 H 0.119 0.881 28 H 0.083 0.917 29 H 0.062 0.938 30 H 0.108 0.892 31 H 0.100 0.900 32 H 0.110 0.890 33 H 0.092 0.908 34 H 0.154 0.846 35 H 0.162 0.838 36 H 0.156 0.844 37 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -2.110 -17.889 3.654 18.380 hybrid contribution -0.201 1.206 0.105 1.228 sum -2.312 -16.683 3.759 17.257 Atomic orbital electron populations 1.69676 1.06870 1.29365 1.50163 1.26066 0.96562 1.02459 0.96105 0.84919 0.77855 0.76746 0.78762 1.19436 1.19379 1.19832 1.19705 0.92717 0.84216 1.50188 0.90426 1.42019 1.09339 1.04879 1.64728 1.21119 0.88193 0.86561 0.81793 1.90466 1.16192 1.88372 1.57584 1.21546 0.99141 0.90946 1.04360 1.21125 0.96548 0.91710 1.01807 1.20747 0.96806 0.94528 0.94534 0.89041 1.22376 0.99340 0.97086 0.96176 1.21087 0.94543 1.02036 0.94130 1.20950 0.97339 0.97993 0.94956 1.20920 0.97066 1.01055 0.94852 1.21353 0.95238 0.97400 1.00607 1.21343 1.00930 0.98620 0.94175 1.20945 0.96183 1.00120 0.96825 1.20761 0.95126 0.97245 0.97187 0.91223 0.76966 0.89217 0.88146 0.91734 0.93764 0.89198 0.89956 0.88970 0.90825 0.84575 0.83802 0.84388 0.85741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.54 13.05 21.66 0.28 -50.25 16 2 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 3 Si 0.99 43.60 29.55 68.60 2.03 45.63 16 4 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 5 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 6 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 7 C -0.34 -19.83 9.68 84.04 0.81 -19.01 16 8 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 9 N -0.57 -30.65 5.29 -306.98 -1.62 -32.27 16 10 C 0.43 21.65 7.78 87.66 0.68 22.33 16 11 O -0.64 -36.70 15.56 -3.07 -0.05 -36.75 16 12 C -0.12 -4.31 5.53 29.85 0.17 -4.15 16 13 C -0.07 -2.39 3.89 30.59 0.12 -2.27 16 14 C -0.05 -1.18 2.89 -10.87 -0.03 -1.21 16 15 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 16 C -0.11 -2.24 6.60 31.51 0.21 -2.03 16 17 C -0.08 -1.64 6.76 30.52 0.21 -1.44 16 18 C -0.11 -2.72 6.14 -19.60 -0.12 -2.84 16 19 C -0.12 -2.64 10.04 22.30 0.22 -2.42 16 20 C -0.13 -2.69 10.05 22.24 0.22 -2.46 16 21 C -0.13 -3.03 10.05 22.24 0.22 -2.81 16 22 C -0.12 -3.14 8.77 22.30 0.20 -2.94 16 23 C -0.10 -2.69 5.13 -19.60 -0.10 -2.79 16 24 H 0.28 14.24 8.31 -92.71 -0.77 13.47 16 25 H 0.40 20.10 7.90 -92.71 -0.73 19.37 16 26 H 0.09 3.04 6.02 -2.39 -0.01 3.02 16 27 H 0.10 3.12 8.14 -2.39 -0.02 3.10 16 28 H 0.06 2.16 8.05 -2.39 -0.02 2.15 16 29 H 0.04 1.63 8.09 -2.38 -0.02 1.61 16 30 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.08 1.60 7.86 -2.39 -0.02 1.58 16 32 H 0.09 1.45 8.14 -2.38 -0.02 1.43 16 33 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.14 2.30 8.06 -2.91 -0.02 2.27 16 35 H 0.14 2.21 8.06 -2.91 -0.02 2.19 16 36 H 0.14 2.56 8.06 -2.91 -0.02 2.54 16 37 H 0.12 2.97 7.53 -2.91 -0.02 2.95 16 Total: -1.00 -69.11 309.37 4.25 -64.86 By element: Atomic # 1 Polarization: 32.69 SS G_CDS: 0.34 Total: 33.03 kcal Atomic # 6 Polarization: -27.52 SS G_CDS: 3.28 Total: -24.24 kcal Atomic # 7 Polarization: -81.18 SS G_CDS: -1.34 Total: -82.52 kcal Atomic # 8 Polarization: -36.70 SS G_CDS: -0.05 Total: -36.75 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -69.11 4.25 -64.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879173318.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.055 kcal (2) G-P(sol) polarization free energy of solvation -69.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds