Wall clock time and date at job start Sun Mar 29 2020 23:39:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30665 * 1 3 3 Si 1.86794 * 120.00738 * 2 1 4 4 H 1.48497 * 109.47213 * 239.99963 * 3 2 1 5 5 H 1.48503 * 109.47029 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47616 * 119.99540 * 3 2 1 7 7 C 1.40055 * 119.99414 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99838 * 179.97438 * 7 2 1 9 9 C 1.46369 * 120.00191 * 0.02562 * 7 2 1 10 10 O 1.21691 * 119.99923 * 359.97438 * 9 7 2 11 11 N 1.34775 * 120.00368 * 180.02562 * 9 7 2 12 12 C 1.46504 * 120.00412 * 179.97438 * 11 9 7 13 13 H 1.09001 * 109.17765 * 34.30209 * 12 11 9 14 14 C 1.51593 * 109.18544 * 153.55391 * 12 11 9 15 15 C 1.51588 * 114.43255 * 188.49231 * 14 12 11 16 16 C 1.53075 * 110.94041 * 291.85506 * 15 14 12 17 17 C 1.51460 * 108.44785 * 85.60485 * 16 15 14 18 18 C 1.38393 * 119.51809 * 109.34236 * 17 16 15 19 19 C 1.38295 * 119.61312 * 180.02562 * 18 17 16 20 20 C 1.38253 * 120.05441 * 0.02562 * 19 18 17 21 21 C 1.38290 * 120.06226 * 359.97438 * 20 19 18 22 22 C 1.37036 * 120.14733 * 289.32331 * 17 16 15 23 23 C 1.51459 * 120.16402 * 359.96114 * 22 17 16 24 24 H 0.97010 * 119.99586 * 0.02562 * 1 2 3 25 25 H 0.97000 * 119.99861 * 359.97438 * 11 9 7 26 26 H 1.09003 * 108.49039 * 309.77025 * 14 12 11 27 27 H 1.09003 * 108.49248 * 67.20303 * 14 12 11 28 28 H 1.08999 * 109.18481 * 52.23390 * 15 14 12 29 29 H 1.09006 * 109.18445 * 171.53038 * 15 14 12 30 30 H 1.08996 * 109.63769 * 205.29976 * 16 15 14 31 31 H 1.09008 * 109.63604 * 325.91955 * 16 15 14 32 32 H 1.07995 * 120.19035 * 0.27652 * 18 17 16 33 33 H 1.07997 * 119.97005 * 180.02562 * 19 18 17 34 34 H 1.08000 * 119.97053 * 180.02562 * 20 19 18 35 35 H 1.07997 * 120.19351 * 179.97438 * 21 20 19 36 36 H 1.08995 * 109.64164 * 190.41660 * 23 22 17 37 37 H 1.09001 * 109.63667 * 311.04550 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6176 0.0000 4 1 3.0946 1.6961 -1.2125 5 1 1.2759 2.7464 -0.0006 6 1 3.0945 1.6963 1.2125 7 6 2.0068 -1.2130 0.0005 8 1 3.0868 -1.2131 0.0001 9 6 1.2749 -2.4805 0.0005 10 8 0.0580 -2.4804 0.0005 11 7 1.9486 -3.6478 0.0016 12 6 1.2160 -4.9165 0.0022 13 1 0.3007 -4.8017 -0.5785 14 6 2.0772 -5.9894 -0.6344 15 6 1.3624 -7.3033 -0.8803 16 6 1.0215 -7.9963 0.4414 17 6 -0.2996 -7.4502 0.9421 18 6 -1.4240 -8.2566 0.9174 19 6 -2.6314 -7.7598 1.3735 20 6 -2.7114 -6.4646 1.8503 21 6 -1.5842 -5.6637 1.8725 22 6 -0.3785 -6.1668 1.4160 23 6 0.8548 -5.2881 1.4425 24 1 -0.4850 0.8402 -0.0004 25 1 2.9186 -3.6479 0.0020 26 1 2.4484 -5.6141 -1.5881 27 1 2.9321 -6.1771 0.0153 28 1 0.4422 -7.1126 -1.4325 29 1 2.0056 -7.9561 -1.4706 30 1 0.9364 -9.0709 0.2803 31 1 1.8030 -7.7933 1.1737 32 1 -1.3581 -9.2692 0.5478 33 1 -3.5124 -8.3842 1.3573 34 1 -3.6548 -6.0781 2.2066 35 1 -1.6444 -4.6514 2.2441 36 1 0.6476 -4.3831 2.0134 37 1 1.6821 -5.8316 1.8990 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000888250648.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:39:31 Heat of formation + Delta-G solvation = -34.643554 kcal Electronic energy + Delta-G solvation = -19235.967349 eV Core-core repulsion = 16362.840420 eV Total energy + Delta-G solvation = -2873.126928 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.87957 -37.56224 -35.78531 -33.34838 -32.34093 -31.66610 -30.52607 -28.57880 -26.05230 -25.46165 -23.29964 -21.97424 -20.25685 -19.99599 -19.25690 -17.08463 -16.38405 -15.56674 -15.29941 -14.79919 -14.65186 -14.10722 -14.00958 -13.35497 -13.09697 -12.92742 -12.83020 -12.34696 -12.19524 -12.07145 -11.68168 -11.32349 -11.27056 -10.94464 -10.78884 -10.60817 -10.43513 -10.36475 -10.34332 -10.20664 -10.03830 -8.83663 -8.49350 -8.33717 -7.56095 -7.44395 -6.15911 -4.61700 1.66657 1.69598 3.16720 3.21671 3.23400 4.05164 4.12209 4.61535 4.68722 4.88687 5.10193 5.13500 5.24909 5.30598 5.32512 5.41228 5.66702 5.70553 5.76746 5.84507 5.94734 5.96631 6.02442 6.09504 6.20155 6.22159 6.37560 6.42112 6.48568 6.65193 6.75473 6.81492 6.89095 7.09946 7.34090 7.45185 7.97130 8.15365 8.35946 9.04781 9.58145 10.63081 10.82410 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.029463 B = 0.005358 C = 0.004706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.110743 B = 5224.143350 C = 5948.038458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.088 3.912 3 Si 0.906 3.094 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.547 4.547 8 H 0.066 0.934 9 C 0.555 3.445 10 O -0.577 6.577 11 N -0.764 5.764 12 C 0.163 3.837 13 H 0.075 0.925 14 C -0.125 4.125 15 C -0.108 4.108 16 C -0.078 4.078 17 C -0.085 4.085 18 C -0.124 4.124 19 C -0.131 4.131 20 C -0.126 4.126 21 C -0.102 4.102 22 C -0.063 4.063 23 C -0.089 4.089 24 H 0.268 0.732 25 H 0.378 0.622 26 H 0.064 0.936 27 H 0.058 0.942 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.116 0.884 33 H 0.115 0.885 34 H 0.117 0.883 35 H 0.125 0.875 36 H 0.078 0.922 37 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.332 -14.392 1.775 14.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.131 4.131 3 Si 0.731 3.269 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.584 4.584 8 H 0.084 0.916 9 C 0.359 3.641 10 O -0.459 6.459 11 N -0.418 5.418 12 C 0.057 3.943 13 H 0.093 0.907 14 C -0.163 4.163 15 C -0.146 4.146 16 C -0.115 4.115 17 C -0.085 4.085 18 C -0.142 4.142 19 C -0.149 4.149 20 C -0.144 4.144 21 C -0.121 4.121 22 C -0.064 4.064 23 C -0.127 4.127 24 H 0.079 0.921 25 H 0.210 0.790 26 H 0.082 0.918 27 H 0.076 0.924 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.092 0.908 32 H 0.134 0.866 33 H 0.133 0.867 34 H 0.135 0.865 35 H 0.143 0.857 36 H 0.097 0.903 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.251 -14.256 1.755 14.366 hybrid contribution 0.813 0.864 0.012 1.187 sum 1.063 -13.392 1.767 13.550 Atomic orbital electron populations 1.70012 1.07010 1.27262 1.35413 1.25686 0.94590 1.00188 0.92653 0.86464 0.79840 0.81198 0.79402 1.19339 1.20600 1.19325 1.20864 0.93513 0.89513 1.54524 0.91595 1.18196 0.87268 0.82414 0.76254 1.90604 1.13963 1.86761 1.54615 1.46265 1.08403 1.04723 1.82391 1.20093 0.96032 0.84426 0.93757 0.90715 1.21328 0.98864 0.94829 1.01274 1.21207 1.00819 0.95961 0.96643 1.20800 0.94428 0.98982 0.97285 1.19633 0.95485 0.93878 0.99544 1.21005 0.92617 0.99259 1.01295 1.21032 0.97455 0.95960 1.00486 1.21124 0.98370 0.94295 1.00630 1.21295 0.92178 0.99718 0.98863 1.19710 0.95774 0.93644 0.97239 1.21325 0.93974 0.98311 0.99120 0.92129 0.79046 0.91773 0.92361 0.91717 0.91759 0.91453 0.90784 0.86559 0.86732 0.86518 0.85652 0.90284 0.91722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.08 11.83 55.55 0.66 -22.42 16 2 C 0.09 2.47 5.50 -17.37 -0.10 2.38 16 3 Si 0.91 20.20 29.56 -169.99 -5.02 15.17 16 4 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 5 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 6 H -0.27 -5.82 7.11 56.52 0.40 -5.41 16 7 C -0.55 -15.43 9.54 -35.63 -0.34 -15.77 16 8 H 0.07 1.70 7.85 -52.49 -0.41 1.29 16 9 C 0.55 15.65 7.58 -12.99 -0.10 15.55 16 10 O -0.58 -18.46 14.66 5.20 0.08 -18.39 16 11 N -0.76 -16.93 5.01 -55.87 -0.28 -17.21 16 12 C 0.16 3.14 2.25 -68.60 -0.15 2.99 16 13 H 0.07 1.72 7.25 -51.93 -0.38 1.34 16 14 C -0.12 -1.83 4.66 -28.16 -0.13 -1.96 16 15 C -0.11 -1.37 5.65 -27.41 -0.15 -1.52 16 16 C -0.08 -0.94 5.46 -27.47 -0.15 -1.09 16 17 C -0.09 -1.25 4.99 -104.63 -0.52 -1.77 16 18 C -0.12 -1.65 9.69 -39.50 -0.38 -2.03 16 19 C -0.13 -1.76 10.05 -39.55 -0.40 -2.16 16 20 C -0.13 -1.89 10.05 -39.56 -0.40 -2.29 16 21 C -0.10 -1.79 9.69 -39.50 -0.38 -2.17 16 22 C -0.06 -1.08 4.98 -104.63 -0.52 -1.60 16 23 C -0.09 -1.60 5.08 -27.47 -0.14 -1.74 16 24 H 0.27 7.34 8.29 -40.82 -0.34 7.00 16 25 H 0.38 7.37 8.58 -40.82 -0.35 7.02 16 26 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.06 0.76 7.83 -51.93 -0.41 0.36 16 28 H 0.06 0.91 7.85 -51.93 -0.41 0.50 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.07 0.67 7.91 -51.93 -0.41 0.26 16 31 H 0.07 0.87 6.90 -51.92 -0.36 0.51 16 32 H 0.12 1.25 7.97 -52.49 -0.42 0.83 16 33 H 0.11 1.23 8.06 -52.49 -0.42 0.81 16 34 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 35 H 0.13 2.33 7.97 -52.49 -0.42 1.91 16 36 H 0.08 1.67 7.72 -51.93 -0.40 1.27 16 37 H 0.06 1.02 6.90 -51.93 -0.36 0.66 16 LS Contribution 302.96 15.07 4.57 4.57 Total: -1.00 -33.40 302.96 -9.02 -42.41 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: -5.14 Total: 9.05 kcal Atomic # 6 Polarization: -9.32 SS G_CDS: -3.87 Total: -13.19 kcal Atomic # 7 Polarization: -40.00 SS G_CDS: 0.38 Total: -39.63 kcal Atomic # 8 Polarization: -18.46 SS G_CDS: 0.08 Total: -18.39 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -33.40 -9.02 -42.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888250648.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.770 kcal (2) G-P(sol) polarization free energy of solvation -33.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds