Wall clock time and date at job start Sun Mar 29 2020 23:39:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30665 * 1 3 3 Si 1.86794 * 120.00738 * 2 1 4 4 H 1.48497 * 109.47213 * 239.99963 * 3 2 1 5 5 H 1.48503 * 109.47029 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47616 * 119.99540 * 3 2 1 7 7 C 1.40055 * 119.99414 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99838 * 179.97438 * 7 2 1 9 9 C 1.46369 * 120.00191 * 0.02562 * 7 2 1 10 10 O 1.21691 * 119.99923 * 359.97438 * 9 7 2 11 11 N 1.34775 * 120.00368 * 180.02562 * 9 7 2 12 12 C 1.46504 * 120.00412 * 179.97438 * 11 9 7 13 13 H 1.09001 * 109.17765 * 34.30209 * 12 11 9 14 14 C 1.51593 * 109.18544 * 153.55391 * 12 11 9 15 15 C 1.51588 * 114.43255 * 188.49231 * 14 12 11 16 16 C 1.53075 * 110.94041 * 291.85506 * 15 14 12 17 17 C 1.51460 * 108.44785 * 85.60485 * 16 15 14 18 18 C 1.38393 * 119.51809 * 109.34236 * 17 16 15 19 19 C 1.38295 * 119.61312 * 180.02562 * 18 17 16 20 20 C 1.38253 * 120.05441 * 0.02562 * 19 18 17 21 21 C 1.38290 * 120.06226 * 359.97438 * 20 19 18 22 22 C 1.37036 * 120.14733 * 289.32331 * 17 16 15 23 23 C 1.51459 * 120.16402 * 359.96114 * 22 17 16 24 24 H 0.97010 * 119.99586 * 0.02562 * 1 2 3 25 25 H 0.97000 * 119.99861 * 359.97438 * 11 9 7 26 26 H 1.09003 * 108.49039 * 309.77025 * 14 12 11 27 27 H 1.09003 * 108.49248 * 67.20303 * 14 12 11 28 28 H 1.08999 * 109.18481 * 52.23390 * 15 14 12 29 29 H 1.09006 * 109.18445 * 171.53038 * 15 14 12 30 30 H 1.08996 * 109.63769 * 205.29976 * 16 15 14 31 31 H 1.09008 * 109.63604 * 325.91955 * 16 15 14 32 32 H 1.07995 * 120.19035 * 0.27652 * 18 17 16 33 33 H 1.07997 * 119.97005 * 180.02562 * 19 18 17 34 34 H 1.08000 * 119.97053 * 180.02562 * 20 19 18 35 35 H 1.07997 * 120.19351 * 179.97438 * 21 20 19 36 36 H 1.08995 * 109.64164 * 190.41660 * 23 22 17 37 37 H 1.09001 * 109.63667 * 311.04550 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6176 0.0000 4 1 3.0946 1.6961 -1.2125 5 1 1.2759 2.7464 -0.0006 6 1 3.0945 1.6963 1.2125 7 6 2.0068 -1.2130 0.0005 8 1 3.0868 -1.2131 0.0001 9 6 1.2749 -2.4805 0.0005 10 8 0.0580 -2.4804 0.0005 11 7 1.9486 -3.6478 0.0016 12 6 1.2160 -4.9165 0.0022 13 1 0.3007 -4.8017 -0.5785 14 6 2.0772 -5.9894 -0.6344 15 6 1.3624 -7.3033 -0.8803 16 6 1.0215 -7.9963 0.4414 17 6 -0.2996 -7.4502 0.9421 18 6 -1.4240 -8.2566 0.9174 19 6 -2.6314 -7.7598 1.3735 20 6 -2.7114 -6.4646 1.8503 21 6 -1.5842 -5.6637 1.8725 22 6 -0.3785 -6.1668 1.4160 23 6 0.8548 -5.2881 1.4425 24 1 -0.4850 0.8402 -0.0004 25 1 2.9186 -3.6479 0.0020 26 1 2.4484 -5.6141 -1.5881 27 1 2.9321 -6.1771 0.0153 28 1 0.4422 -7.1126 -1.4325 29 1 2.0056 -7.9561 -1.4706 30 1 0.9364 -9.0709 0.2803 31 1 1.8030 -7.7933 1.1737 32 1 -1.3581 -9.2692 0.5478 33 1 -3.5124 -8.3842 1.3573 34 1 -3.6548 -6.0781 2.2066 35 1 -1.6444 -4.6514 2.2441 36 1 0.6476 -4.3831 2.0134 37 1 1.6821 -5.8316 1.8990 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000888250648.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:39:30 Heat of formation + Delta-G solvation = -56.446250 kcal Electronic energy + Delta-G solvation = -19236.912784 eV Core-core repulsion = 16362.840420 eV Total energy + Delta-G solvation = -2874.072364 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.14333 -39.39897 -37.32685 -34.96383 -34.38251 -33.09563 -31.84784 -30.06184 -28.08807 -26.66354 -24.65835 -23.20862 -21.89851 -21.38596 -20.79948 -19.09856 -17.64007 -17.38597 -16.85623 -16.20241 -15.99701 -15.85653 -15.37271 -14.72509 -14.48045 -14.33067 -14.16786 -14.11943 -13.71937 -13.38046 -13.12063 -12.90529 -12.84070 -12.62027 -12.58325 -12.11595 -11.96304 -11.79679 -11.61897 -11.44872 -11.41450 -10.92621 -9.86087 -9.75394 -9.59052 -9.25576 -8.28467 -6.85597 0.49117 0.50196 1.38442 1.42377 1.53781 2.23874 2.48238 2.86056 3.09074 3.62517 3.74520 3.96217 3.96977 4.08649 4.10977 4.16062 4.29698 4.41945 4.54896 4.57879 4.65992 4.77341 4.85202 4.89939 4.99872 5.10897 5.18137 5.24312 5.29025 5.30912 5.37639 5.43951 5.61325 5.65844 5.85580 5.89854 6.17883 6.26231 6.32822 6.86694 7.59034 8.51831 8.69050 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.029463 B = 0.005358 C = 0.004706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.110743 B = 5224.143350 C = 5948.038458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.028 3.972 3 Si 0.998 3.002 4 H -0.253 1.253 5 H -0.275 1.275 6 H -0.254 1.254 7 C -0.576 4.576 8 H 0.087 0.913 9 C 0.538 3.462 10 O -0.628 6.628 11 N -0.752 5.752 12 C 0.166 3.834 13 H 0.026 0.974 14 C -0.118 4.118 15 C -0.103 4.103 16 C -0.075 4.075 17 C -0.089 4.089 18 C -0.118 4.118 19 C -0.127 4.127 20 C -0.135 4.135 21 C -0.140 4.140 22 C -0.088 4.088 23 C -0.078 4.078 24 H 0.273 0.727 25 H 0.394 0.606 26 H 0.062 0.938 27 H 0.084 0.916 28 H 0.045 0.955 29 H 0.101 0.899 30 H 0.102 0.898 31 H 0.081 0.919 32 H 0.156 0.844 33 H 0.150 0.850 34 H 0.130 0.870 35 H 0.089 0.911 36 H 0.030 0.970 37 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.285 -16.784 1.240 17.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.186 4.186 3 Si 0.817 3.183 4 H -0.177 1.177 5 H -0.200 1.200 6 H -0.178 1.178 7 C -0.613 4.613 8 H 0.105 0.895 9 C 0.342 3.658 10 O -0.515 6.515 11 N -0.406 5.406 12 C 0.061 3.939 13 H 0.044 0.956 14 C -0.156 4.156 15 C -0.141 4.141 16 C -0.112 4.112 17 C -0.089 4.089 18 C -0.136 4.136 19 C -0.145 4.145 20 C -0.153 4.153 21 C -0.159 4.159 22 C -0.088 4.088 23 C -0.116 4.116 24 H 0.083 0.917 25 H 0.228 0.772 26 H 0.081 0.919 27 H 0.103 0.897 28 H 0.064 0.936 29 H 0.119 0.881 30 H 0.121 0.879 31 H 0.100 0.900 32 H 0.174 0.826 33 H 0.168 0.832 34 H 0.148 0.852 35 H 0.108 0.892 36 H 0.049 0.951 37 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 2.251 -16.699 1.221 16.895 hybrid contribution 0.146 1.524 0.185 1.542 sum 2.398 -15.175 1.406 15.428 Atomic orbital electron populations 1.70202 1.09584 1.28855 1.36692 1.26980 0.95491 1.04975 0.91200 0.85078 0.78192 0.74735 0.80312 1.17738 1.20014 1.17811 1.21432 0.94719 0.90211 1.54907 0.89470 1.18594 0.86901 0.84381 0.75932 1.90562 1.16183 1.87901 1.56872 1.45948 1.09148 1.04598 1.80880 1.20217 0.94819 0.84601 0.94301 0.95586 1.21279 0.98782 0.94370 1.01151 1.21207 1.00416 0.95096 0.97418 1.20900 0.92808 1.00743 0.96700 1.19986 0.97765 0.92625 0.98505 1.21500 0.91712 1.00661 0.99705 1.21466 0.99103 0.95142 0.98759 1.21333 0.97900 0.95201 1.00885 1.21250 0.94231 0.98982 1.01389 1.19714 0.94783 0.95108 0.99228 1.21129 0.95865 0.96980 0.97664 0.91714 0.77217 0.91884 0.89743 0.93605 0.88096 0.87932 0.90031 0.82601 0.83211 0.85225 0.89243 0.95064 0.88970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.87 11.83 21.84 0.26 -51.62 16 2 C 0.03 1.62 5.50 85.31 0.47 2.09 16 3 Si 1.00 41.82 29.56 68.60 2.03 43.84 16 4 H -0.25 -9.94 7.11 99.48 0.71 -9.24 16 5 H -0.28 -11.17 7.11 99.48 0.71 -10.46 16 6 H -0.25 -10.00 7.11 99.48 0.71 -9.29 16 7 C -0.58 -33.41 9.54 24.83 0.24 -33.17 16 8 H 0.09 4.50 7.85 -2.91 -0.02 4.48 16 9 C 0.54 32.11 7.58 86.36 0.65 32.77 16 10 O -0.63 -43.43 14.66 -4.32 -0.06 -43.49 16 11 N -0.75 -34.73 5.01 -448.91 -2.25 -36.98 16 12 C 0.17 6.68 2.25 44.55 0.10 6.78 16 13 H 0.03 1.29 7.25 -2.39 -0.02 1.27 16 14 C -0.12 -3.28 4.66 29.67 0.14 -3.14 16 15 C -0.10 -2.29 5.65 30.16 0.17 -2.12 16 16 C -0.07 -1.51 5.46 30.12 0.16 -1.34 16 17 C -0.09 -2.45 4.99 -19.87 -0.10 -2.55 16 18 C -0.12 -2.77 9.69 22.32 0.22 -2.55 16 19 C -0.13 -3.13 10.05 22.29 0.22 -2.91 16 20 C -0.14 -4.17 10.05 22.29 0.22 -3.94 16 21 C -0.14 -5.37 9.69 22.32 0.22 -5.15 16 22 C -0.09 -3.14 4.98 -19.87 -0.10 -3.24 16 23 C -0.08 -2.98 5.08 30.11 0.15 -2.82 16 24 H 0.27 15.64 8.29 -92.70 -0.77 14.87 16 25 H 0.39 15.47 8.58 -92.71 -0.80 14.67 16 26 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 27 H 0.08 1.94 7.83 -2.39 -0.02 1.92 16 28 H 0.05 1.20 7.85 -2.39 -0.02 1.18 16 29 H 0.10 1.59 8.14 -2.38 -0.02 1.57 16 30 H 0.10 1.42 7.91 -2.39 -0.02 1.40 16 31 H 0.08 1.57 6.90 -2.38 -0.02 1.55 16 32 H 0.16 2.44 7.97 -2.91 -0.02 2.42 16 33 H 0.15 2.63 8.06 -2.91 -0.02 2.61 16 34 H 0.13 3.48 8.06 -2.91 -0.02 3.45 16 35 H 0.09 3.90 7.97 -2.91 -0.02 3.88 16 36 H 0.03 1.45 7.72 -2.39 -0.02 1.43 16 37 H 0.09 2.90 6.90 -2.39 -0.02 2.88 16 Total: -1.00 -80.21 302.96 3.02 -77.19 By element: Atomic # 1 Polarization: 32.08 SS G_CDS: 0.28 Total: 32.35 kcal Atomic # 6 Polarization: -24.07 SS G_CDS: 2.77 Total: -21.30 kcal Atomic # 7 Polarization: -86.60 SS G_CDS: -1.99 Total: -88.60 kcal Atomic # 8 Polarization: -43.43 SS G_CDS: -0.06 Total: -43.49 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 2.03 Total: 43.84 kcal Total: -80.21 3.02 -77.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888250648.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.742 kcal (2) G-P(sol) polarization free energy of solvation -80.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds