Wall clock time and date at job start Sun Mar 29 2020 23:38:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99985 * 2 1 4 4 H 1.48499 * 109.47360 * 240.00051 * 3 2 1 5 5 H 1.48501 * 109.47130 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47360 * 119.99894 * 3 2 1 7 7 C 1.37875 * 120.00197 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00286 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00166 * 0.02562 * 7 2 1 10 10 N 1.46897 * 109.47771 * 180.02562 * 9 7 2 11 11 C 1.46893 * 111.00219 * 179.97438 * 10 9 7 12 12 H 1.08999 * 109.46552 * 35.01974 * 11 10 9 13 13 C 1.52999 * 109.46281 * 155.00106 * 11 10 9 14 14 C 1.53019 * 109.46609 * 180.14876 * 13 11 10 15 15 C 1.52957 * 109.42941 * 300.20802 * 14 13 11 16 16 C 1.52961 * 109.81489 * 59.70406 * 15 14 13 17 17 C 1.52986 * 109.45679 * 275.04174 * 11 10 9 18 18 H 1.08999 * 109.47557 * 299.84948 * 17 11 10 19 19 F 1.39901 * 109.47155 * 59.85121 * 17 11 10 20 20 O 1.43708 * 109.41152 * 299.61080 * 15 14 13 21 21 C 1.44795 * 104.79303 * 215.85918 * 20 15 14 22 22 C 1.54914 * 101.72544 * 36.06115 * 21 20 15 23 23 O 1.43289 * 109.67739 * 180.27069 * 15 14 13 24 24 H 0.96997 * 119.99703 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.47185 * 59.99787 * 9 7 2 26 26 H 1.09005 * 109.47006 * 300.00614 * 9 7 2 27 27 H 1.00903 * 110.99633 * 56.03813 * 10 9 7 28 28 H 1.08999 * 109.47421 * 60.14724 * 13 11 10 29 29 H 1.09008 * 109.47560 * 300.14239 * 13 11 10 30 30 H 1.09001 * 109.47980 * 180.22520 * 14 13 11 31 31 H 1.08995 * 109.47805 * 60.19762 * 14 13 11 32 32 H 1.08995 * 109.48307 * 60.28506 * 16 15 14 33 33 H 1.09007 * 109.47654 * 180.31517 * 16 15 14 34 34 H 1.08994 * 110.97832 * 277.94807 * 21 20 15 35 35 H 1.09006 * 111.00740 * 154.18283 * 21 20 15 36 36 H 1.08993 * 110.69629 * 206.07384 * 22 21 20 37 37 H 1.09001 * 110.69220 * 82.87109 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4991 -0.0017 10 7 2.2057 -3.6157 -0.0015 11 6 1.5054 -4.9070 -0.0020 12 1 0.5927 -4.8250 -0.5921 13 6 2.4119 -5.9783 -0.6114 14 6 1.6811 -7.3227 -0.6153 15 6 1.3198 -7.7096 0.8197 16 6 0.4176 -6.6381 1.4341 17 6 1.1504 -5.2947 1.4347 18 1 2.0632 -5.3791 2.0245 19 9 0.3241 -4.3130 1.9921 20 8 2.5211 -7.8269 1.5996 21 6 2.2646 -8.9222 2.5113 22 6 1.4229 -9.8766 1.6278 23 8 0.6406 -8.9713 0.8228 24 1 -0.4849 0.8400 -0.0004 25 1 0.6248 -2.5563 -0.8920 26 1 0.6241 -2.5574 0.8880 27 1 2.8400 -3.5489 0.7804 28 1 3.3237 -6.0621 -0.0200 29 1 2.6665 -5.7002 -1.6342 30 1 2.3283 -8.0869 -1.0458 31 1 0.7712 -7.2400 -1.2096 32 1 -0.4970 -6.5528 0.8474 33 1 0.1682 -6.9165 2.4581 34 1 1.6928 -8.5847 3.3756 35 1 3.1948 -9.3975 2.8227 36 1 0.7762 -10.5016 2.2435 37 1 2.0689 -10.4902 0.9999 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894083697.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:38:11 Heat of formation + Delta-G solvation = -145.804124 kcal Electronic energy + Delta-G solvation = -20526.127265 eV Core-core repulsion = 17217.410828 eV Total energy + Delta-G solvation = -3308.716437 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.137 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -47.20126 -40.93759 -37.18612 -35.17379 -34.06369 -32.17632 -30.38115 -29.79812 -27.68008 -25.31007 -23.55962 -22.55592 -21.95373 -21.11264 -19.91486 -17.37828 -17.06405 -16.33761 -16.01898 -15.71294 -15.40876 -14.78622 -14.47724 -14.31468 -13.96594 -13.78299 -13.46665 -12.95270 -12.92498 -12.49374 -12.21544 -12.13070 -11.96191 -11.61490 -11.34377 -11.28760 -10.85358 -10.77936 -10.57327 -10.50095 -10.41380 -10.24004 -9.79722 -9.62032 -9.09470 -8.41241 -7.21480 -5.94544 -3.96133 3.14722 3.38527 3.41934 3.45125 3.72567 4.30578 4.47611 4.50877 4.55295 4.69250 4.79702 4.84940 5.03642 5.09814 5.17684 5.24619 5.30455 5.40323 5.45160 5.49208 5.60406 5.67547 5.82586 5.92671 6.00621 6.09059 6.30844 6.43251 6.59299 6.92024 7.33574 7.61773 7.83609 8.20312 8.40723 8.65087 9.12220 9.67397 11.16431 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.047813 B = 0.004571 C = 0.004486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.470252 B = 6124.353937 C = 6240.333703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.898 3.102 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.514 4.514 8 H 0.060 0.940 9 C 0.184 3.816 10 N -0.678 5.678 11 C 0.063 3.937 12 H 0.082 0.918 13 C -0.099 4.099 14 C -0.120 4.120 15 C 0.265 3.735 16 C -0.161 4.161 17 C 0.070 3.930 18 H 0.084 0.916 19 F -0.201 7.201 20 O -0.363 6.363 21 C 0.012 3.988 22 C 0.020 3.980 23 O -0.377 6.377 24 H 0.261 0.739 25 H 0.024 0.976 26 H 0.010 0.990 27 H 0.329 0.671 28 H 0.071 0.929 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.090 0.910 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.109 0.891 36 H 0.098 0.902 37 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.123 -20.481 3.859 21.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.726 3.274 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.553 4.553 8 H 0.078 0.922 9 C 0.057 3.943 10 N -0.307 5.307 11 C -0.049 4.049 12 H 0.100 0.900 13 C -0.138 4.138 14 C -0.158 4.158 15 C 0.188 3.812 16 C -0.200 4.200 17 C 0.032 3.968 18 H 0.102 0.898 19 F -0.181 7.181 20 O -0.284 6.284 21 C -0.064 4.064 22 C -0.056 4.056 23 O -0.298 6.298 24 H 0.070 0.930 25 H 0.042 0.958 26 H 0.028 0.972 27 H 0.146 0.854 28 H 0.090 0.910 29 H 0.100 0.900 30 H 0.094 0.906 31 H 0.102 0.898 32 H 0.109 0.891 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.127 0.873 36 H 0.116 0.884 37 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 3.025 -20.181 3.040 20.631 hybrid contribution -0.091 0.793 1.209 1.449 sum 2.934 -19.388 4.249 20.064 Atomic orbital electron populations 1.69965 1.06034 1.26728 1.50902 1.24968 0.94848 0.99224 0.95481 0.86565 0.79415 0.82840 0.78564 1.20235 1.21390 1.20326 1.21149 0.93375 0.90391 1.50369 0.92184 1.19784 0.90809 0.86857 0.96822 1.60802 1.20759 1.00596 1.48501 1.22175 0.97972 0.92277 0.92470 0.89998 1.21400 0.98429 0.91294 1.02651 1.21897 1.02112 0.98722 0.93063 1.23240 0.80807 0.84557 0.92598 1.22682 1.00009 0.94617 1.02703 1.22330 0.92369 0.84554 0.97544 0.89780 1.92854 1.74563 1.63837 1.86886 1.89305 1.36243 1.52810 1.50007 1.24387 1.01343 0.86919 0.93770 1.24185 0.94758 0.93424 0.93243 1.88898 1.48071 1.21137 1.71700 0.92954 0.95753 0.97232 0.85356 0.91043 0.89965 0.90607 0.89800 0.89096 0.90691 0.90716 0.87337 0.88407 0.90571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.61 13.29 55.43 0.74 -26.88 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 22.24 29.54 -169.99 -5.02 17.22 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.51 -15.02 9.32 -34.44 -0.32 -15.34 16 8 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 9 C 0.18 4.98 5.14 -4.98 -0.03 4.95 16 10 N -0.68 -14.86 6.23 -108.01 -0.67 -15.53 16 11 C 0.06 1.13 2.34 -67.72 -0.16 0.97 16 12 H 0.08 1.57 7.80 -51.93 -0.41 1.16 16 13 C -0.10 -1.45 5.39 -26.72 -0.14 -1.59 16 14 C -0.12 -1.51 5.34 -26.74 -0.14 -1.65 16 15 C 0.26 3.38 1.03 -26.77 -0.03 3.35 16 16 C -0.16 -2.28 5.02 -26.74 -0.13 -2.42 16 17 C 0.07 1.20 3.11 -26.73 -0.08 1.11 16 18 H 0.08 1.38 7.68 -51.93 -0.40 0.98 16 19 F -0.20 -4.22 14.79 2.25 0.03 -4.19 16 20 O -0.36 -4.49 9.66 -59.04 -0.57 -5.06 16 21 C 0.01 0.11 7.91 38.17 0.30 0.41 16 22 C 0.02 0.17 8.08 38.17 0.31 0.48 16 23 O -0.38 -4.56 10.87 -59.04 -0.64 -5.20 16 24 H 0.26 7.58 8.31 -40.82 -0.34 7.25 16 25 H 0.02 0.71 8.06 -51.93 -0.42 0.29 16 26 H 0.01 0.29 6.02 -51.93 -0.31 -0.03 16 27 H 0.33 7.01 8.46 -39.29 -0.33 6.67 16 28 H 0.07 1.04 7.69 -51.93 -0.40 0.64 16 29 H 0.08 1.20 8.14 -51.92 -0.42 0.78 16 30 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 33 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 298.95 15.07 4.51 4.51 Total: -1.00 -32.61 298.95 -7.77 -40.38 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -5.62 Total: 2.93 kcal Atomic # 6 Polarization: -7.65 SS G_CDS: -0.52 Total: -8.17 kcal Atomic # 7 Polarization: -42.47 SS G_CDS: 0.06 Total: -42.41 kcal Atomic # 8 Polarization: -9.06 SS G_CDS: -1.21 Total: -10.27 kcal Atomic # 9 Polarization: -4.22 SS G_CDS: 0.03 Total: -4.19 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -32.61 -7.77 -40.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894083697.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.427 kcal (2) G-P(sol) polarization free energy of solvation -32.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds