Wall clock time and date at job start Sun Mar 29 2020 23:38:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99985 * 2 1 4 4 H 1.48499 * 109.47360 * 240.00051 * 3 2 1 5 5 H 1.48501 * 109.47130 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47360 * 119.99894 * 3 2 1 7 7 C 1.37875 * 120.00197 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00286 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00166 * 0.02562 * 7 2 1 10 10 N 1.46897 * 109.47771 * 180.02562 * 9 7 2 11 11 C 1.46893 * 111.00219 * 179.97438 * 10 9 7 12 12 H 1.08999 * 109.46552 * 35.01974 * 11 10 9 13 13 C 1.52999 * 109.46281 * 155.00106 * 11 10 9 14 14 C 1.53019 * 109.46609 * 180.14876 * 13 11 10 15 15 C 1.52957 * 109.42941 * 300.20802 * 14 13 11 16 16 C 1.52961 * 109.81489 * 59.70406 * 15 14 13 17 17 C 1.52986 * 109.45679 * 275.04174 * 11 10 9 18 18 H 1.08999 * 109.47557 * 299.84948 * 17 11 10 19 19 F 1.39901 * 109.47155 * 59.85121 * 17 11 10 20 20 O 1.43708 * 109.41152 * 299.61080 * 15 14 13 21 21 C 1.44795 * 104.79303 * 215.85918 * 20 15 14 22 22 C 1.54914 * 101.72544 * 36.06115 * 21 20 15 23 23 O 1.43289 * 109.67739 * 180.27069 * 15 14 13 24 24 H 0.96997 * 119.99703 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.47185 * 59.99787 * 9 7 2 26 26 H 1.09005 * 109.47006 * 300.00614 * 9 7 2 27 27 H 1.00903 * 110.99633 * 56.03813 * 10 9 7 28 28 H 1.08999 * 109.47421 * 60.14724 * 13 11 10 29 29 H 1.09008 * 109.47560 * 300.14239 * 13 11 10 30 30 H 1.09001 * 109.47980 * 180.22520 * 14 13 11 31 31 H 1.08995 * 109.47805 * 60.19762 * 14 13 11 32 32 H 1.08995 * 109.48307 * 60.28506 * 16 15 14 33 33 H 1.09007 * 109.47654 * 180.31517 * 16 15 14 34 34 H 1.08994 * 110.97832 * 277.94807 * 21 20 15 35 35 H 1.09006 * 111.00740 * 154.18283 * 21 20 15 36 36 H 1.08993 * 110.69629 * 206.07384 * 22 21 20 37 37 H 1.09001 * 110.69220 * 82.87109 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4991 -0.0017 10 7 2.2057 -3.6157 -0.0015 11 6 1.5054 -4.9070 -0.0020 12 1 0.5927 -4.8250 -0.5921 13 6 2.4119 -5.9783 -0.6114 14 6 1.6811 -7.3227 -0.6153 15 6 1.3198 -7.7096 0.8197 16 6 0.4176 -6.6381 1.4341 17 6 1.1504 -5.2947 1.4347 18 1 2.0632 -5.3791 2.0245 19 9 0.3241 -4.3130 1.9921 20 8 2.5211 -7.8269 1.5996 21 6 2.2646 -8.9222 2.5113 22 6 1.4229 -9.8766 1.6278 23 8 0.6406 -8.9713 0.8228 24 1 -0.4849 0.8400 -0.0004 25 1 0.6248 -2.5563 -0.8920 26 1 0.6241 -2.5574 0.8880 27 1 2.8400 -3.5489 0.7804 28 1 3.3237 -6.0621 -0.0200 29 1 2.6665 -5.7002 -1.6342 30 1 2.3283 -8.0869 -1.0458 31 1 0.7712 -7.2400 -1.2096 32 1 -0.4970 -6.5528 0.8474 33 1 0.1682 -6.9165 2.4581 34 1 1.6928 -8.5847 3.3756 35 1 3.1948 -9.3975 2.8227 36 1 0.7762 -10.5016 2.2435 37 1 2.0689 -10.4902 0.9999 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894083697.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:38:10 Heat of formation + Delta-G solvation = -169.219458 kcal Electronic energy + Delta-G solvation = -20527.142630 eV Core-core repulsion = 17217.410828 eV Total energy + Delta-G solvation = -3309.731802 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 259.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.77258 -41.83521 -38.55767 -36.08172 -35.77621 -34.12969 -31.56503 -30.90979 -29.14355 -27.06967 -24.36137 -23.77832 -23.70331 -22.63034 -21.13463 -18.61750 -18.30610 -17.86483 -17.11762 -17.02898 -16.80521 -16.59522 -16.05668 -15.38517 -15.05824 -15.01681 -14.87210 -14.23603 -14.12265 -13.89834 -13.64250 -13.57195 -13.32800 -13.08681 -13.00282 -12.67381 -12.42624 -12.32263 -12.08072 -12.00248 -11.82260 -11.60195 -11.18765 -11.13509 -10.66644 -10.58506 -9.07704 -8.19698 -6.31140 1.40821 1.45225 1.53054 2.32597 2.41401 2.83581 3.13054 3.33137 3.41874 3.44061 3.67229 3.70385 3.86297 3.94778 4.04885 4.15481 4.22240 4.33223 4.41625 4.50763 4.61402 4.69295 4.71582 4.85018 4.91592 4.97525 5.06054 5.16951 5.21280 5.30912 5.41442 5.62084 6.03422 6.08096 6.40350 6.67619 6.89375 7.38740 8.91729 Molecular weight = 259.14amu Principal moments of inertia in cm(-1) A = 0.047813 B = 0.004571 C = 0.004486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.470252 B = 6124.353937 C = 6240.333703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.000 4.000 3 Si 0.975 3.025 4 H -0.267 1.267 5 H -0.283 1.283 6 H -0.266 1.266 7 C -0.537 4.537 8 H 0.064 0.936 9 C 0.200 3.800 10 N -0.676 5.676 11 C 0.061 3.939 12 H 0.063 0.937 13 C -0.087 4.087 14 C -0.116 4.116 15 C 0.271 3.729 16 C -0.155 4.155 17 C 0.069 3.931 18 H 0.093 0.907 19 F -0.228 7.228 20 O -0.380 6.380 21 C 0.006 3.994 22 C 0.015 3.985 23 O -0.392 6.392 24 H 0.264 0.736 25 H -0.008 1.008 26 H -0.017 1.017 27 H 0.334 0.666 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.096 0.904 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.136 0.864 36 H 0.121 0.879 37 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.631 -21.731 4.218 22.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.198 4.198 3 Si 0.799 3.201 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.191 1.191 7 C -0.576 4.576 8 H 0.082 0.918 9 C 0.073 3.927 10 N -0.305 5.305 11 C -0.050 4.050 12 H 0.081 0.919 13 C -0.125 4.125 14 C -0.154 4.154 15 C 0.194 3.806 16 C -0.194 4.194 17 C 0.031 3.969 18 H 0.111 0.889 19 F -0.209 7.209 20 O -0.301 6.301 21 C -0.070 4.070 22 C -0.060 4.060 23 O -0.313 6.313 24 H 0.073 0.927 25 H 0.010 0.990 26 H 0.001 0.999 27 H 0.152 0.848 28 H 0.094 0.906 29 H 0.100 0.900 30 H 0.114 0.886 31 H 0.103 0.897 32 H 0.103 0.897 33 H 0.103 0.897 34 H 0.096 0.904 35 H 0.153 0.847 36 H 0.139 0.861 37 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 4.549 -21.473 3.405 22.212 hybrid contribution -0.576 1.070 1.139 1.665 sum 3.972 -20.404 4.544 21.278 Atomic orbital electron populations 1.70111 1.07894 1.27951 1.51542 1.25975 0.95778 1.03440 0.94625 0.85364 0.78071 0.77536 0.79170 1.19175 1.20797 1.19121 1.21541 0.93774 0.91568 1.50686 0.91758 1.19379 0.90859 0.88543 0.93961 1.60674 1.20024 1.00954 1.48812 1.22280 0.97850 0.91443 0.93422 0.91898 1.21272 0.97883 0.91121 1.02193 1.21860 1.02297 0.97730 0.93504 1.22995 0.80688 0.84611 0.92347 1.22607 0.99846 0.93475 1.03504 1.22441 0.92776 0.85282 0.96443 0.88894 1.92801 1.75440 1.65358 1.87264 1.89286 1.35807 1.54255 1.50738 1.24682 1.02955 0.86070 0.93281 1.24485 0.95146 0.93024 0.93349 1.88880 1.48840 1.21137 1.72486 0.92712 0.98972 0.99882 0.84843 0.90562 0.90002 0.88587 0.89738 0.89715 0.89737 0.90364 0.84659 0.86105 0.89089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.81 13.29 21.45 0.28 -58.52 16 2 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 3 Si 0.97 45.68 29.54 68.60 2.03 47.71 16 4 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 5 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 6 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 7 C -0.54 -31.95 9.32 25.60 0.24 -31.71 16 8 H 0.06 3.68 7.81 -2.91 -0.02 3.65 16 9 C 0.20 11.31 5.14 85.56 0.44 11.75 16 10 N -0.68 -30.32 6.23 -495.62 -3.09 -33.41 16 11 C 0.06 2.25 2.34 44.91 0.11 2.35 16 12 H 0.06 2.53 7.80 -2.39 -0.02 2.51 16 13 C -0.09 -2.44 5.39 30.60 0.16 -2.28 16 14 C -0.12 -2.73 5.34 30.59 0.16 -2.56 16 15 C 0.27 6.45 1.03 30.57 0.03 6.48 16 16 C -0.16 -4.32 5.02 30.59 0.15 -4.17 16 17 C 0.07 2.35 3.11 30.60 0.10 2.45 16 18 H 0.09 3.02 7.68 -2.39 -0.02 3.00 16 19 F -0.23 -9.95 14.79 44.97 0.67 -9.29 16 20 O -0.38 -8.50 9.66 -126.22 -1.22 -9.72 16 21 C 0.01 0.08 7.91 72.64 0.57 0.66 16 22 C 0.02 0.21 8.08 72.64 0.59 0.79 16 23 O -0.39 -8.58 10.87 -126.22 -1.37 -9.95 16 24 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 25 H -0.01 -0.49 8.06 -2.39 -0.02 -0.50 16 26 H -0.02 -1.01 6.02 -2.38 -0.01 -1.03 16 27 H 0.33 14.40 8.46 -89.69 -0.76 13.64 16 28 H 0.08 2.10 7.69 -2.39 -0.02 2.08 16 29 H 0.08 2.32 8.14 -2.38 -0.02 2.30 16 30 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 33 H 0.08 2.17 8.14 -2.38 -0.02 2.15 16 34 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.14 1.15 8.14 -2.38 -0.02 1.13 16 36 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 Total: -1.00 -71.31 298.95 0.62 -70.70 By element: Atomic # 1 Polarization: 17.99 SS G_CDS: 0.30 Total: 18.29 kcal Atomic # 6 Polarization: -18.81 SS G_CDS: 3.02 Total: -15.80 kcal Atomic # 7 Polarization: -89.13 SS G_CDS: -2.80 Total: -91.94 kcal Atomic # 8 Polarization: -17.08 SS G_CDS: -2.59 Total: -19.67 kcal Atomic # 9 Polarization: -9.95 SS G_CDS: 0.67 Total: -9.29 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Total: -71.31 0.62 -70.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894083697.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.522 kcal (2) G-P(sol) polarization free energy of solvation -71.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds