Wall clock time and date at job start Mon Mar 30 2020 00:21:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46505 * 109.47227 * 152.86963 * 3 2 1 5 5 C 1.36936 * 119.99718 * 274.43395 * 4 3 2 6 6 H 1.08001 * 120.00215 * 321.20097 * 5 4 3 7 7 C 1.38816 * 119.99698 * 141.21106 * 5 4 3 8 8 N 1.31621 * 119.99822 * 155.85699 * 7 5 4 9 9 Si 1.86800 * 119.99930 * 335.84913 * 7 5 4 10 10 H 1.48492 * 109.47137 * 93.92100 * 9 7 5 11 11 H 1.48506 * 109.46987 * 213.91851 * 9 7 5 12 12 H 1.48501 * 109.47034 * 333.91800 * 9 7 5 13 13 C 1.46494 * 119.99908 * 94.42725 * 4 3 2 14 14 C 1.50699 * 109.47216 * 86.28031 * 13 4 3 15 15 C 1.38289 * 119.94446 * 357.58461 * 14 13 4 16 16 C 1.38118 * 120.05885 * 180.02562 * 15 14 13 17 17 C 1.38752 * 119.94234 * 359.97438 * 16 15 14 18 18 O 1.35904 * 120.05771 * 180.02562 * 17 16 15 19 19 C 1.42904 * 116.99708 * 0.02562 * 18 17 16 20 20 C 1.38712 * 119.89253 * 0.28131 * 17 16 15 21 21 C 1.38170 * 119.93637 * 359.48921 * 20 17 16 22 22 C 1.50700 * 119.96948 * 180.23751 * 21 20 17 23 23 H 4.40647 * 5.51434 * 180.02562 * 4 1 2 24 24 H 1.09004 * 109.47667 * 32.87131 * 3 2 1 25 25 H 1.08997 * 109.47392 * 272.87124 * 3 2 1 26 26 H 0.97004 * 119.99704 * 179.97438 * 8 7 5 27 27 H 1.09005 * 109.47331 * 326.27869 * 13 4 3 28 28 H 1.09001 * 109.47389 * 206.27994 * 13 4 3 29 29 H 1.08005 * 119.96718 * 0.02562 * 15 14 13 30 30 H 1.07998 * 120.03339 * 179.97438 * 16 15 14 31 31 H 1.09007 * 109.46808 * 299.99891 * 19 18 17 32 32 H 1.08995 * 109.47430 * 59.99731 * 19 18 17 33 33 H 1.08999 * 109.46967 * 179.97438 * 19 18 17 34 34 H 1.07996 * 120.02986 * 179.72601 * 20 17 16 35 35 H 1.09002 * 109.46889 * 271.46302 * 22 21 20 36 36 H 1.09001 * 109.47636 * 31.45943 * 22 21 20 37 37 H 1.09001 * 109.47590 * 151.46759 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1337 1.2302 -0.6299 5 6 3.2755 1.2927 -1.9904 6 1 3.6457 0.4364 -2.5348 7 6 2.9436 2.4567 -2.6700 8 7 3.4906 2.7150 -3.8390 9 14 1.7204 3.6563 -1.9256 10 1 2.4520 4.7021 -1.1666 11 1 0.9296 4.2933 -3.0093 12 1 0.8071 2.9273 -1.0093 13 6 3.4697 2.3926 0.1958 14 6 4.8946 2.2755 0.6722 15 6 5.6405 1.1566 0.3496 16 6 6.9465 1.0466 0.7854 17 6 7.5102 2.0601 1.5471 18 8 8.7952 1.9545 1.9767 19 6 9.5078 0.7724 1.6067 20 6 6.7583 3.1791 1.8739 21 6 5.4538 3.2865 1.4314 22 6 4.6380 4.5042 1.7815 23 1 -1.0503 -0.0003 0.0003 24 1 3.0097 -0.8623 -0.5578 25 1 3.0093 -0.0507 1.0263 26 1 3.2584 3.5283 -4.3140 27 1 2.8012 2.4329 1.0559 28 1 3.3576 3.3022 -0.3943 29 1 5.2014 0.3681 -0.2436 30 1 7.5286 0.1724 0.5336 31 1 8.9930 -0.1019 2.0051 32 1 9.5556 0.7021 0.5201 33 1 10.5186 0.8156 2.0124 34 1 7.1934 3.9673 2.4703 35 1 4.1334 4.3420 2.7340 36 1 5.2943 5.3708 1.8611 37 1 3.8959 4.6807 1.0028 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000897164392.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:21:41 Heat of formation + Delta-G solvation = 67.883136 kcal Electronic energy + Delta-G solvation = -19194.775391 eV Core-core repulsion = 16326.094354 eV Total energy + Delta-G solvation = -2868.681037 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.83996 -37.86365 -35.88040 -32.55716 -32.16858 -31.61826 -30.06266 -27.84475 -26.55782 -26.26721 -25.18635 -22.29691 -21.00800 -20.26823 -17.54545 -17.35825 -16.95343 -16.08639 -15.53738 -15.27331 -14.70922 -14.28095 -13.97020 -13.59403 -13.43256 -13.18960 -13.03878 -12.69170 -12.32989 -12.05126 -11.93753 -11.67551 -11.65482 -11.36307 -11.05374 -10.66320 -10.51452 -10.29704 -10.03519 -9.73499 -9.64070 -9.35449 -8.57760 -8.29745 -7.49937 -7.05139 -6.07776 -3.52279 1.80924 1.98548 3.25328 3.43332 3.50581 3.51423 3.54531 3.61022 4.24401 4.47331 4.98240 5.11201 5.15732 5.23457 5.25048 5.35460 5.40515 5.49079 5.58843 5.63294 5.81841 5.89266 5.93334 6.15103 6.17305 6.21622 6.32134 6.41336 6.49236 6.66087 6.70043 6.79613 6.98467 7.24661 7.31222 7.76906 7.97065 8.27947 8.41617 8.86649 9.60891 9.98104 11.06917 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.019942 B = 0.006729 C = 0.006349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.711659 B = 4160.133447 C = 4409.312610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.259 4.259 2 C -0.165 4.165 3 C 0.236 3.764 4 N -0.592 5.592 5 C -0.274 4.274 6 H 0.083 0.917 7 C 0.045 3.955 8 N -0.890 5.890 9 Si 0.863 3.137 10 H -0.283 1.283 11 H -0.299 1.299 12 H -0.262 1.262 13 C 0.174 3.826 14 C -0.116 4.116 15 C -0.044 4.044 16 C -0.216 4.216 17 C 0.109 3.891 18 O -0.325 6.325 19 C 0.030 3.970 20 C -0.158 4.158 21 C -0.057 4.057 22 C -0.116 4.116 23 H 0.202 0.798 24 H 0.076 0.924 25 H 0.069 0.931 26 H 0.264 0.736 27 H 0.051 0.949 28 H 0.074 0.926 29 H 0.139 0.861 30 H 0.120 0.880 31 H 0.052 0.948 32 H 0.054 0.946 33 H 0.093 0.907 34 H 0.121 0.879 35 H 0.069 0.931 36 H 0.063 0.937 37 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.556 -2.057 11.861 13.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.278 4.278 2 C -0.168 4.168 3 C 0.111 3.889 4 N -0.312 5.312 5 C -0.403 4.403 6 H 0.100 0.900 7 C -0.157 4.157 8 N -0.530 5.530 9 Si 0.692 3.308 10 H -0.211 1.211 11 H -0.226 1.226 12 H -0.186 1.186 13 C 0.049 3.951 14 C -0.118 4.118 15 C -0.062 4.062 16 C -0.235 4.235 17 C 0.065 3.935 18 O -0.240 6.240 19 C -0.065 4.065 20 C -0.177 4.177 21 C -0.058 4.058 22 C -0.173 4.173 23 H 0.219 0.781 24 H 0.094 0.906 25 H 0.087 0.913 26 H 0.074 0.926 27 H 0.069 0.931 28 H 0.091 0.909 29 H 0.157 0.843 30 H 0.137 0.863 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.111 0.889 34 H 0.139 0.861 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 5.712 -1.822 11.788 13.225 hybrid contribution -0.945 0.601 -0.045 1.121 sum 4.766 -1.221 11.743 12.732 Atomic orbital electron populations 1.24686 0.95805 1.03309 1.04019 1.25105 0.96192 0.97998 0.97495 1.18303 0.81868 0.91502 0.97266 1.44192 1.72706 1.10462 1.03812 1.18725 1.39329 1.01645 0.80556 0.89970 1.25489 0.97141 0.98001 0.95030 1.69880 1.41324 1.25931 1.15835 0.87147 0.83680 0.81245 0.78715 1.21107 1.22615 1.18618 1.20180 0.89599 0.91709 0.93653 1.20724 0.99041 0.94083 0.97985 1.21005 0.91913 0.97996 0.95280 1.21219 0.97759 0.99774 1.04720 1.18914 0.83441 0.95255 0.95920 1.85994 1.23165 1.41802 1.73000 1.22953 0.96171 0.86722 1.00646 1.20054 0.93865 0.97751 1.05985 1.19483 0.93331 0.95934 0.97037 1.20812 0.99612 0.94978 1.01871 0.78051 0.90571 0.91335 0.92572 0.93077 0.90860 0.84290 0.86250 0.92951 0.92771 0.88889 0.86142 0.91264 0.91754 0.91188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -4.88 19.25 29.55 0.57 -4.31 16 2 C -0.17 -3.35 13.64 -37.13 -0.51 -3.86 16 3 C 0.24 4.56 5.22 -6.83 -0.04 4.53 16 4 N -0.59 -13.39 0.84 -177.95 -0.15 -13.53 16 5 C -0.27 -7.35 9.63 -15.06 -0.15 -7.49 16 6 H 0.08 2.35 8.06 -52.49 -0.42 1.93 16 7 C 0.05 1.28 5.23 -17.43 -0.09 1.19 16 8 N -0.89 -26.70 13.97 55.49 0.78 -25.92 16 9 Si 0.86 21.82 25.31 -169.99 -4.30 17.52 16 10 H -0.28 -6.85 6.61 56.52 0.37 -6.47 16 11 H -0.30 -7.71 7.11 56.52 0.40 -7.30 16 12 H -0.26 -6.63 7.11 56.52 0.40 -6.23 16 13 C 0.17 3.70 3.54 -5.20 -0.02 3.68 16 14 C -0.12 -2.26 5.88 -104.60 -0.62 -2.88 16 15 C -0.04 -0.83 9.15 -39.61 -0.36 -1.19 16 16 C -0.22 -3.63 9.04 -39.44 -0.36 -3.99 16 17 C 0.11 1.82 6.69 -39.22 -0.26 1.56 16 18 O -0.33 -4.89 10.50 -19.44 -0.20 -5.09 16 19 C 0.03 0.33 9.81 101.05 0.99 1.32 16 20 C -0.16 -2.63 9.65 -39.43 -0.38 -3.01 16 21 C -0.06 -1.00 5.88 -104.65 -0.62 -1.62 16 22 C -0.12 -1.74 9.62 36.01 0.35 -1.39 16 23 H 0.20 3.01 7.80 -54.08 -0.42 2.59 16 24 H 0.08 1.40 8.08 -51.93 -0.42 0.98 16 25 H 0.07 1.16 8.04 -51.93 -0.42 0.74 16 26 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 27 H 0.05 1.01 8.10 -51.93 -0.42 0.58 16 28 H 0.07 1.72 2.95 -51.93 -0.15 1.57 16 29 H 0.14 2.72 6.14 -52.48 -0.32 2.39 16 30 H 0.12 1.71 6.30 -52.49 -0.33 1.38 16 31 H 0.05 0.51 7.66 -51.92 -0.40 0.11 16 32 H 0.05 0.57 7.66 -51.93 -0.40 0.17 16 33 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.12 1.77 8.06 -52.49 -0.42 1.34 16 35 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.06 0.84 8.09 -51.93 -0.42 0.42 16 37 H 0.07 1.15 6.52 -51.93 -0.34 0.81 16 LS Contribution 311.72 15.07 4.70 4.70 Total: -1.00 -31.19 311.72 -5.56 -36.75 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -4.89 Total: 3.05 kcal Atomic # 6 Polarization: -15.99 SS G_CDS: -1.48 Total: -17.47 kcal Atomic # 7 Polarization: -40.08 SS G_CDS: 0.63 Total: -39.46 kcal Atomic # 8 Polarization: -4.89 SS G_CDS: -0.20 Total: -5.09 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.30 Total: 17.52 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -31.19 -5.56 -36.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897164392.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.634 kcal (2) G-P(sol) polarization free energy of solvation -31.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds