Wall clock time and date at job start Mon Mar 30 2020 00:21:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46505 * 109.47227 * 152.86963 * 3 2 1 5 5 C 1.36936 * 119.99718 * 274.43395 * 4 3 2 6 6 H 1.08001 * 120.00215 * 321.20097 * 5 4 3 7 7 C 1.38816 * 119.99698 * 141.21106 * 5 4 3 8 8 N 1.31621 * 119.99822 * 155.85699 * 7 5 4 9 9 Si 1.86800 * 119.99930 * 335.84913 * 7 5 4 10 10 H 1.48492 * 109.47137 * 93.92100 * 9 7 5 11 11 H 1.48506 * 109.46987 * 213.91851 * 9 7 5 12 12 H 1.48501 * 109.47034 * 333.91800 * 9 7 5 13 13 C 1.46494 * 119.99908 * 94.42725 * 4 3 2 14 14 C 1.50699 * 109.47216 * 86.28031 * 13 4 3 15 15 C 1.38289 * 119.94446 * 357.58461 * 14 13 4 16 16 C 1.38118 * 120.05885 * 180.02562 * 15 14 13 17 17 C 1.38752 * 119.94234 * 359.97438 * 16 15 14 18 18 O 1.35904 * 120.05771 * 180.02562 * 17 16 15 19 19 C 1.42904 * 116.99708 * 0.02562 * 18 17 16 20 20 C 1.38712 * 119.89253 * 0.28131 * 17 16 15 21 21 C 1.38170 * 119.93637 * 359.48921 * 20 17 16 22 22 C 1.50700 * 119.96948 * 180.23751 * 21 20 17 23 23 H 4.40647 * 5.51434 * 180.02562 * 4 1 2 24 24 H 1.09004 * 109.47667 * 32.87131 * 3 2 1 25 25 H 1.08997 * 109.47392 * 272.87124 * 3 2 1 26 26 H 0.97004 * 119.99704 * 179.97438 * 8 7 5 27 27 H 1.09005 * 109.47331 * 326.27869 * 13 4 3 28 28 H 1.09001 * 109.47389 * 206.27994 * 13 4 3 29 29 H 1.08005 * 119.96718 * 0.02562 * 15 14 13 30 30 H 1.07998 * 120.03339 * 179.97438 * 16 15 14 31 31 H 1.09007 * 109.46808 * 299.99891 * 19 18 17 32 32 H 1.08995 * 109.47430 * 59.99731 * 19 18 17 33 33 H 1.08999 * 109.46967 * 179.97438 * 19 18 17 34 34 H 1.07996 * 120.02986 * 179.72601 * 20 17 16 35 35 H 1.09002 * 109.46889 * 271.46302 * 22 21 20 36 36 H 1.09001 * 109.47636 * 31.45943 * 22 21 20 37 37 H 1.09001 * 109.47590 * 151.46759 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1337 1.2302 -0.6299 5 6 3.2755 1.2927 -1.9904 6 1 3.6457 0.4364 -2.5348 7 6 2.9436 2.4567 -2.6700 8 7 3.4906 2.7150 -3.8390 9 14 1.7204 3.6563 -1.9256 10 1 2.4520 4.7021 -1.1666 11 1 0.9296 4.2933 -3.0093 12 1 0.8071 2.9273 -1.0093 13 6 3.4697 2.3926 0.1958 14 6 4.8946 2.2755 0.6722 15 6 5.6405 1.1566 0.3496 16 6 6.9465 1.0466 0.7854 17 6 7.5102 2.0601 1.5471 18 8 8.7952 1.9545 1.9767 19 6 9.5078 0.7724 1.6067 20 6 6.7583 3.1791 1.8739 21 6 5.4538 3.2865 1.4314 22 6 4.6380 4.5042 1.7815 23 1 -1.0503 -0.0003 0.0003 24 1 3.0097 -0.8623 -0.5578 25 1 3.0093 -0.0507 1.0263 26 1 3.2584 3.5283 -4.3140 27 1 2.8012 2.4329 1.0559 28 1 3.3576 3.3022 -0.3943 29 1 5.2014 0.3681 -0.2436 30 1 7.5286 0.1724 0.5336 31 1 8.9930 -0.1019 2.0051 32 1 9.5556 0.7021 0.5201 33 1 10.5186 0.8156 2.0124 34 1 7.1934 3.9673 2.4703 35 1 4.1334 4.3420 2.7340 36 1 5.2943 5.3708 1.8611 37 1 3.8959 4.6807 1.0028 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000897164392.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:21:40 Heat of formation + Delta-G solvation = 50.687144 kcal Electronic energy + Delta-G solvation = -19195.521065 eV Core-core repulsion = 16326.094354 eV Total energy + Delta-G solvation = -2869.426712 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.11316 -39.21595 -37.47307 -34.32207 -33.51995 -33.34633 -31.51864 -29.07389 -28.22359 -27.38614 -26.77481 -23.96661 -22.53641 -21.60080 -19.08733 -18.90002 -18.49946 -17.49378 -17.01376 -16.57181 -16.25756 -15.84969 -15.45170 -15.18228 -14.81254 -14.61394 -14.44158 -14.19742 -13.98449 -13.53399 -13.20185 -13.08575 -12.91909 -12.77583 -12.59306 -12.44964 -12.11228 -11.79455 -11.58154 -11.50141 -11.26339 -10.86860 -10.62732 -9.61442 -8.94544 -8.85207 -8.23521 -5.63568 0.47874 0.61246 1.25267 1.38032 1.50068 1.97334 2.09019 2.39275 2.44091 2.88077 3.02273 3.48099 3.79944 3.97986 4.03629 4.18772 4.34432 4.41149 4.42390 4.48617 4.57265 4.62619 4.68963 4.72068 4.76790 4.83556 4.91769 5.00460 5.07997 5.25588 5.34081 5.44468 5.61146 5.83205 5.92500 6.00319 6.15580 6.54842 6.86847 6.96174 7.55731 7.97980 8.95440 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.019942 B = 0.006729 C = 0.006349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.711659 B = 4160.133447 C = 4409.312610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.211 4.211 3 C 0.238 3.762 4 N -0.599 5.599 5 C -0.253 4.253 6 H 0.051 0.949 7 C -0.009 4.009 8 N -0.940 5.940 9 Si 0.921 3.079 10 H -0.269 1.269 11 H -0.308 1.308 12 H -0.259 1.259 13 C 0.177 3.823 14 C -0.142 4.142 15 C -0.059 4.059 16 C -0.219 4.219 17 C 0.111 3.889 18 O -0.334 6.334 19 C 0.020 3.980 20 C -0.163 4.163 21 C -0.060 4.060 22 C -0.115 4.115 23 H 0.237 0.763 24 H 0.078 0.922 25 H 0.094 0.906 26 H 0.262 0.738 27 H 0.067 0.933 28 H 0.050 0.950 29 H 0.124 0.876 30 H 0.140 0.860 31 H 0.063 0.937 32 H 0.054 0.946 33 H 0.123 0.877 34 H 0.143 0.857 35 H 0.092 0.908 36 H 0.084 0.916 37 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.752 -1.811 14.291 15.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.259 4.259 2 C -0.213 4.213 3 C 0.114 3.886 4 N -0.319 5.319 5 C -0.383 4.383 6 H 0.068 0.932 7 C -0.206 4.206 8 N -0.583 5.583 9 Si 0.750 3.250 10 H -0.196 1.196 11 H -0.237 1.237 12 H -0.184 1.184 13 C 0.053 3.947 14 C -0.145 4.145 15 C -0.077 4.077 16 C -0.238 4.238 17 C 0.066 3.934 18 O -0.248 6.248 19 C -0.074 4.074 20 C -0.182 4.182 21 C -0.060 4.060 22 C -0.172 4.172 23 H 0.254 0.746 24 H 0.096 0.904 25 H 0.112 0.888 26 H 0.071 0.929 27 H 0.085 0.915 28 H 0.068 0.932 29 H 0.142 0.858 30 H 0.158 0.842 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.141 0.859 34 H 0.160 0.840 35 H 0.110 0.890 36 H 0.103 0.897 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 5.910 -1.592 14.267 15.525 hybrid contribution -0.890 0.372 -0.716 1.201 sum 5.020 -1.219 13.551 14.503 Atomic orbital electron populations 1.25576 0.96833 1.01196 1.02258 1.25323 0.96947 0.99834 0.99212 1.18324 0.82053 0.89884 0.98382 1.44168 1.73467 1.11826 1.02469 1.18594 1.37054 1.00154 0.82459 0.93178 1.26012 0.98934 1.00100 0.95586 1.69997 1.43494 1.26963 1.17829 0.86195 0.81452 0.79782 0.77612 1.19557 1.23697 1.18351 1.20109 0.91279 0.89970 0.93366 1.20627 0.98367 0.95471 1.00013 1.20959 0.93017 0.97832 0.95933 1.21377 0.97078 1.00794 1.04528 1.19072 0.84256 0.94961 0.95096 1.85995 1.22243 1.43720 1.72823 1.23289 0.97313 0.85726 1.01100 1.20337 0.93533 0.98377 1.05911 1.19743 0.93986 0.96083 0.96208 1.20864 0.99411 0.94627 1.02269 0.74605 0.90396 0.88796 0.92870 0.91538 0.93239 0.85836 0.84211 0.91867 0.92690 0.85899 0.83961 0.88981 0.89730 0.92965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -8.43 19.25 74.32 1.43 -7.00 16 2 C -0.21 -8.26 13.64 31.12 0.42 -7.84 16 3 C 0.24 9.10 5.22 84.57 0.44 9.55 16 4 N -0.60 -27.17 0.84 -716.91 -0.60 -27.77 16 5 C -0.25 -13.92 9.63 84.03 0.81 -13.11 16 6 H 0.05 3.02 8.06 -2.91 -0.02 3.00 16 7 C -0.01 -0.51 5.23 84.86 0.44 -0.07 16 8 N -0.94 -58.33 13.97 21.65 0.30 -58.03 16 9 Si 0.92 45.85 25.31 68.60 1.74 47.58 16 10 H -0.27 -12.58 6.61 99.48 0.66 -11.92 16 11 H -0.31 -15.67 7.11 99.48 0.71 -14.96 16 12 H -0.26 -12.62 7.11 99.48 0.71 -11.92 16 13 C 0.18 7.45 3.54 85.63 0.30 7.75 16 14 C -0.14 -5.49 5.88 -19.85 -0.12 -5.61 16 15 C -0.06 -2.23 9.15 22.25 0.20 -2.03 16 16 C -0.22 -7.12 9.04 22.36 0.20 -6.92 16 17 C 0.11 3.49 6.69 22.51 0.15 3.64 16 18 O -0.33 -9.16 10.50 -92.47 -0.97 -10.13 16 19 C 0.02 0.38 9.81 113.37 1.11 1.49 16 20 C -0.16 -5.07 9.65 22.37 0.22 -4.85 16 21 C -0.06 -1.99 5.88 -19.88 -0.12 -2.11 16 22 C -0.12 -3.19 9.62 71.24 0.69 -2.51 16 23 H 0.24 6.17 7.80 -4.40 -0.03 6.14 16 24 H 0.08 2.90 8.08 -2.39 -0.02 2.88 16 25 H 0.09 3.07 8.04 -2.39 -0.02 3.05 16 26 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 27 H 0.07 2.53 8.10 -2.38 -0.02 2.51 16 28 H 0.05 2.31 2.95 -2.39 -0.01 2.31 16 29 H 0.12 4.95 6.14 -2.91 -0.02 4.93 16 30 H 0.14 3.81 6.30 -2.91 -0.02 3.79 16 31 H 0.06 1.06 7.66 -2.38 -0.02 1.04 16 32 H 0.05 1.03 7.66 -2.39 -0.02 1.02 16 33 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.14 3.73 8.06 -2.91 -0.02 3.70 16 35 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.08 1.97 8.09 -2.39 -0.02 1.95 16 37 H 0.05 1.63 6.52 -2.39 -0.02 1.62 16 Total: -1.00 -68.10 311.72 7.66 -60.44 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: 1.01 Total: 17.52 kcal Atomic # 6 Polarization: -35.80 SS G_CDS: 6.19 Total: -29.61 kcal Atomic # 7 Polarization: -85.50 SS G_CDS: -0.30 Total: -85.80 kcal Atomic # 8 Polarization: -9.16 SS G_CDS: -0.97 Total: -10.13 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 1.74 Total: 47.58 kcal Total: -68.10 7.66 -60.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897164392.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.127 kcal (2) G-P(sol) polarization free energy of solvation -68.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.440 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds