Wall clock time and date at job start Sun Mar 29 2020 23:41:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 119.99317 * 2 1 4 4 H 1.48500 * 109.47010 * 269.99615 * 3 2 1 5 5 H 1.48498 * 109.47571 * 30.00298 * 3 2 1 6 6 H 1.48508 * 109.46799 * 150.00017 * 3 2 1 7 7 C 1.38806 * 120.00431 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99671 * 0.02562 * 7 2 1 9 9 N 1.36938 * 120.00317 * 179.97438 * 7 2 1 10 10 C 1.46498 * 120.00163 * 180.02562 * 9 7 2 11 11 H 1.08993 * 109.30148 * 325.26420 * 10 9 7 12 12 C 1.53120 * 109.38308 * 205.52823 * 10 9 7 13 13 C 1.53007 * 108.09115 * 286.60847 * 12 10 9 14 14 C 1.53245 * 113.60978 * 167.80893 * 13 12 10 15 15 C 1.53873 * 86.95072 * 220.16468 * 14 13 12 16 16 C 1.53270 * 113.55521 * 69.71377 * 13 12 10 17 17 O 1.42337 * 111.94810 * 298.82263 * 13 12 10 18 18 C 1.36046 * 117.50657 * 44.28514 * 17 13 12 19 19 C 1.39168 * 118.18930 * 166.91553 * 18 17 13 20 20 C 1.37946 * 120.25638 * 179.50784 * 19 18 17 21 21 C 1.38292 * 119.88668 * 0.07467 * 20 19 18 22 22 C 1.38034 * 119.99390 * 0.09824 * 21 20 19 23 23 C 1.38289 * 122.02604 * 346.64434 * 18 17 13 24 24 H 0.96996 * 120.00181 * 0.02562 * 1 2 3 25 25 H 0.97006 * 119.99468 * 0.02562 * 9 7 2 26 26 H 1.08995 * 109.74269 * 46.26150 * 12 10 9 27 27 H 1.09006 * 109.73917 * 166.96217 * 12 10 9 28 28 H 1.09004 * 113.63298 * 334.68317 * 14 13 12 29 29 H 1.09005 * 113.63509 * 105.64873 * 14 13 12 30 30 H 1.08999 * 113.59673 * 270.44552 * 15 14 13 31 31 H 1.09003 * 113.59752 * 139.59200 * 15 14 13 32 32 H 1.09004 * 113.63902 * 254.40422 * 16 13 12 33 33 H 1.09005 * 113.63941 * 25.28860 * 16 13 12 34 34 H 1.07998 * 119.87063 * 359.48830 * 19 18 17 35 35 H 1.07997 * 120.05693 * 180.02562 * 20 19 18 36 36 H 1.08004 * 119.99856 * 180.10126 * 21 20 19 37 37 H 1.08005 * 119.79138 * 180.14897 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 2.4975 2.0465 -1.4001 5 1 1.4475 2.6527 0.7001 6 1 3.5476 1.4403 0.7001 7 6 2.0103 -1.2020 0.0005 8 1 1.4703 -2.1374 0.0005 9 7 3.3797 -1.2020 0.0000 10 6 4.1123 -2.4707 0.0000 11 1 3.5606 -3.2053 0.5865 12 6 5.4953 -2.2589 0.6219 13 6 6.3559 -1.4912 -0.3837 14 6 7.6613 -0.9521 0.2112 15 6 7.4144 0.3231 -0.6138 16 6 5.9185 -0.0352 -0.5785 17 8 6.5259 -2.2129 -1.5987 18 6 5.4269 -2.8104 -2.1336 19 6 5.5043 -3.2783 -3.4419 20 6 4.4187 -3.9001 -4.0231 21 6 3.2482 -4.0579 -3.3036 22 6 3.1672 -3.5917 -2.0069 23 6 4.2547 -2.9661 -1.4165 24 1 -0.4850 0.8400 -0.0004 25 1 3.8646 -0.3619 -0.0004 26 1 5.4010 -1.6819 1.5418 27 1 5.9538 -3.2241 0.8375 28 1 7.6169 -0.7911 1.2884 29 1 8.5456 -1.5088 -0.0989 30 1 7.8483 0.2871 -1.6131 31 1 7.6558 1.2421 -0.0795 32 1 5.4038 0.1439 -1.5225 33 1 5.3883 0.3803 0.2785 34 1 6.4177 -3.1539 -4.0046 35 1 4.4824 -4.2623 -5.0385 36 1 2.3977 -4.5459 -3.7563 37 1 2.2523 -3.7188 -1.4471 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932216537.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:41:09 Heat of formation + Delta-G solvation = 30.117645 kcal Electronic energy + Delta-G solvation = -20150.010689 eV Core-core repulsion = 17279.692017 eV Total energy + Delta-G solvation = -2870.318672 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.93644 -38.23466 -35.92763 -35.24642 -32.29680 -30.14145 -29.54869 -29.20628 -25.80567 -24.69928 -23.19622 -22.70429 -21.92458 -20.10178 -18.83763 -17.76183 -16.97517 -16.02905 -15.38029 -15.19919 -14.59731 -14.35073 -14.16966 -13.95584 -13.60688 -13.26927 -12.94414 -12.56724 -12.20462 -12.08449 -12.04364 -11.70620 -11.20509 -11.04530 -10.94652 -10.87476 -10.72988 -10.50039 -10.23236 -9.91437 -9.59184 -9.56577 -9.03104 -8.30753 -7.72544 -7.33970 -5.83294 -3.18284 1.84196 1.92451 3.27810 3.33713 3.39726 3.43557 4.22866 4.52210 4.63938 4.65278 4.89932 4.91406 5.21037 5.26908 5.31667 5.39482 5.48312 5.53740 5.67725 5.73930 5.80163 5.84672 5.87103 5.95892 6.03492 6.04850 6.21595 6.25130 6.36105 6.43442 6.50906 6.57235 6.77288 6.98224 7.16311 7.28708 7.87210 7.94715 8.35300 9.13122 9.85280 10.05019 11.34685 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.015864 B = 0.010623 C = 0.007396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.614896 B = 2635.142587 C = 3784.831654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.008 3.992 3 Si 0.875 3.125 4 H -0.283 1.283 5 H -0.289 1.289 6 H -0.276 1.276 7 C -0.243 4.243 8 H 0.092 0.908 9 N -0.740 5.740 10 C 0.218 3.782 11 H 0.072 0.928 12 C -0.147 4.147 13 C 0.097 3.903 14 C -0.122 4.122 15 C -0.136 4.136 16 C -0.165 4.165 17 O -0.295 6.295 18 C 0.126 3.874 19 C -0.161 4.161 20 C -0.100 4.100 21 C -0.159 4.159 22 C -0.059 4.059 23 C -0.152 4.152 24 H 0.260 0.740 25 H 0.366 0.634 26 H 0.087 0.913 27 H 0.076 0.924 28 H 0.097 0.903 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.097 0.903 34 H 0.119 0.881 35 H 0.119 0.881 36 H 0.117 0.883 37 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.172 -4.692 -2.237 15.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.188 4.188 3 Si 0.705 3.295 4 H -0.209 1.209 5 H -0.215 1.215 6 H -0.202 1.202 7 C -0.373 4.373 8 H 0.110 0.890 9 N -0.385 5.385 10 C 0.108 3.892 11 H 0.090 0.910 12 C -0.185 4.185 13 C 0.058 3.942 14 C -0.159 4.159 15 C -0.174 4.174 16 C -0.202 4.202 17 O -0.209 6.209 18 C 0.081 3.919 19 C -0.180 4.180 20 C -0.118 4.118 21 C -0.177 4.177 22 C -0.078 4.078 23 C -0.156 4.156 24 H 0.070 0.930 25 H 0.203 0.797 26 H 0.105 0.895 27 H 0.095 0.905 28 H 0.116 0.884 29 H 0.095 0.905 30 H 0.101 0.899 31 H 0.087 0.913 32 H 0.095 0.905 33 H 0.115 0.885 34 H 0.137 0.863 35 H 0.137 0.863 36 H 0.135 0.865 37 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 14.093 -4.710 -2.260 15.030 hybrid contribution 0.178 1.352 -0.126 1.369 sum 14.271 -3.358 -2.386 14.854 Atomic orbital electron populations 1.69683 1.04998 1.25846 1.57147 1.24631 0.95177 0.97023 1.01928 0.86740 0.79282 0.85446 0.78002 1.20925 1.21534 1.20233 1.19073 0.80481 0.94744 1.42997 0.89002 1.43161 1.04176 1.01814 1.89318 1.19071 0.90917 0.89843 0.89368 0.91002 1.22407 0.96346 1.01140 0.98629 1.22345 0.97000 0.90678 0.84134 1.22985 0.96390 0.96596 0.99965 1.22855 0.96425 0.97512 1.00582 1.23605 0.96947 0.95982 1.03707 1.85866 1.31750 1.64777 1.38557 1.18718 0.86375 0.94698 0.92117 1.20388 0.99955 1.04852 0.92769 1.20745 0.92886 0.99043 0.99138 1.20982 0.97917 1.03497 0.95320 1.21025 0.97497 0.94552 0.94693 1.20923 0.93139 1.01309 1.00269 0.92985 0.79750 0.89450 0.90533 0.88419 0.90467 0.89886 0.91263 0.90507 0.88461 0.86261 0.86303 0.86533 0.85634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.77 13.97 55.49 0.78 -27.99 16 2 C 0.01 0.25 5.50 -17.43 -0.10 0.15 16 3 Si 0.87 21.91 27.73 -169.99 -4.71 17.20 16 4 H -0.28 -7.15 7.11 56.52 0.40 -6.74 16 5 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 6 H -0.28 -6.36 5.76 56.52 0.33 -6.03 16 7 C -0.24 -6.67 10.13 -15.06 -0.15 -6.82 16 8 H 0.09 2.66 7.61 -52.49 -0.40 2.26 16 9 N -0.74 -17.23 4.73 -54.47 -0.26 -17.48 16 10 C 0.22 4.28 2.78 -69.00 -0.19 4.08 16 11 H 0.07 1.42 8.06 -51.93 -0.42 1.00 16 12 C -0.15 -2.38 5.06 -26.67 -0.13 -2.51 16 13 C 0.10 1.54 1.05 -90.35 -0.09 1.45 16 14 C -0.12 -1.52 7.49 -26.15 -0.20 -1.72 16 15 C -0.14 -1.79 8.04 -25.83 -0.21 -2.00 16 16 C -0.16 -2.76 5.45 -26.14 -0.14 -2.90 16 17 O -0.30 -5.13 9.96 -19.89 -0.20 -5.33 16 18 C 0.13 2.31 6.51 -39.22 -0.26 2.06 16 19 C -0.16 -2.64 9.92 -39.34 -0.39 -3.04 16 20 C -0.10 -1.53 10.04 -39.67 -0.40 -1.93 16 21 C -0.16 -2.64 10.04 -39.64 -0.40 -3.04 16 22 C -0.06 -1.12 9.36 -39.50 -0.37 -1.49 16 23 C -0.15 -2.96 5.31 -104.43 -0.55 -3.52 16 24 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 25 H 0.37 8.31 2.12 -40.82 -0.09 8.22 16 26 H 0.09 1.35 8.14 -51.93 -0.42 0.92 16 27 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 28 H 0.10 1.05 8.10 -51.93 -0.42 0.63 16 29 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 33 H 0.10 1.72 5.98 -51.93 -0.31 1.41 16 34 H 0.12 1.71 8.06 -52.49 -0.42 1.29 16 35 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 36 H 0.12 1.67 8.06 -52.48 -0.42 1.25 16 37 H 0.13 2.48 7.61 -52.48 -0.40 2.08 16 LS Contribution 293.87 15.07 4.43 4.43 Total: -1.00 -30.84 293.87 -8.60 -39.44 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: -5.05 Total: 10.95 kcal Atomic # 6 Polarization: -17.64 SS G_CDS: -3.58 Total: -21.22 kcal Atomic # 7 Polarization: -45.99 SS G_CDS: 0.52 Total: -45.48 kcal Atomic # 8 Polarization: -5.13 SS G_CDS: -0.20 Total: -5.33 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.71 Total: 17.20 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -30.84 -8.60 -39.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932216537.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.561 kcal (2) G-P(sol) polarization free energy of solvation -30.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds