Wall clock time and date at job start Sun Mar 29 2020 23:41:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 119.99317 * 2 1 4 4 H 1.48500 * 109.47010 * 269.99615 * 3 2 1 5 5 H 1.48498 * 109.47571 * 30.00298 * 3 2 1 6 6 H 1.48508 * 109.46799 * 150.00017 * 3 2 1 7 7 C 1.38806 * 120.00431 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99671 * 0.02562 * 7 2 1 9 9 N 1.36938 * 120.00317 * 179.97438 * 7 2 1 10 10 C 1.46498 * 120.00163 * 180.02562 * 9 7 2 11 11 H 1.08993 * 109.30148 * 325.26420 * 10 9 7 12 12 C 1.53120 * 109.38308 * 205.52823 * 10 9 7 13 13 C 1.53007 * 108.09115 * 286.60847 * 12 10 9 14 14 C 1.53245 * 113.60978 * 167.80893 * 13 12 10 15 15 C 1.53873 * 86.95072 * 220.16468 * 14 13 12 16 16 C 1.53270 * 113.55521 * 69.71377 * 13 12 10 17 17 O 1.42337 * 111.94810 * 298.82263 * 13 12 10 18 18 C 1.36046 * 117.50657 * 44.28514 * 17 13 12 19 19 C 1.39168 * 118.18930 * 166.91553 * 18 17 13 20 20 C 1.37946 * 120.25638 * 179.50784 * 19 18 17 21 21 C 1.38292 * 119.88668 * 0.07467 * 20 19 18 22 22 C 1.38034 * 119.99390 * 0.09824 * 21 20 19 23 23 C 1.38289 * 122.02604 * 346.64434 * 18 17 13 24 24 H 0.96996 * 120.00181 * 0.02562 * 1 2 3 25 25 H 0.97006 * 119.99468 * 0.02562 * 9 7 2 26 26 H 1.08995 * 109.74269 * 46.26150 * 12 10 9 27 27 H 1.09006 * 109.73917 * 166.96217 * 12 10 9 28 28 H 1.09004 * 113.63298 * 334.68317 * 14 13 12 29 29 H 1.09005 * 113.63509 * 105.64873 * 14 13 12 30 30 H 1.08999 * 113.59673 * 270.44552 * 15 14 13 31 31 H 1.09003 * 113.59752 * 139.59200 * 15 14 13 32 32 H 1.09004 * 113.63902 * 254.40422 * 16 13 12 33 33 H 1.09005 * 113.63941 * 25.28860 * 16 13 12 34 34 H 1.07998 * 119.87063 * 359.48830 * 19 18 17 35 35 H 1.07997 * 120.05693 * 180.02562 * 20 19 18 36 36 H 1.08004 * 119.99856 * 180.10126 * 21 20 19 37 37 H 1.08005 * 119.79138 * 180.14897 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 2.4975 2.0465 -1.4001 5 1 1.4475 2.6527 0.7001 6 1 3.5476 1.4403 0.7001 7 6 2.0103 -1.2020 0.0005 8 1 1.4703 -2.1374 0.0005 9 7 3.3797 -1.2020 0.0000 10 6 4.1123 -2.4707 0.0000 11 1 3.5606 -3.2053 0.5865 12 6 5.4953 -2.2589 0.6219 13 6 6.3559 -1.4912 -0.3837 14 6 7.6613 -0.9521 0.2112 15 6 7.4144 0.3231 -0.6138 16 6 5.9185 -0.0352 -0.5785 17 8 6.5259 -2.2129 -1.5987 18 6 5.4269 -2.8104 -2.1336 19 6 5.5043 -3.2783 -3.4419 20 6 4.4187 -3.9001 -4.0231 21 6 3.2482 -4.0579 -3.3036 22 6 3.1672 -3.5917 -2.0069 23 6 4.2547 -2.9661 -1.4165 24 1 -0.4850 0.8400 -0.0004 25 1 3.8646 -0.3619 -0.0004 26 1 5.4010 -1.6819 1.5418 27 1 5.9538 -3.2241 0.8375 28 1 7.6169 -0.7911 1.2884 29 1 8.5456 -1.5088 -0.0989 30 1 7.8483 0.2871 -1.6131 31 1 7.6558 1.2421 -0.0795 32 1 5.4038 0.1439 -1.5225 33 1 5.3883 0.3803 0.2785 34 1 6.4177 -3.1539 -4.0046 35 1 4.4824 -4.2623 -5.0385 36 1 2.3977 -4.5459 -3.7563 37 1 2.2523 -3.7188 -1.4471 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932216537.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:41:08 Heat of formation + Delta-G solvation = 11.911099 kcal Electronic energy + Delta-G solvation = -20150.800185 eV Core-core repulsion = 17279.692017 eV Total energy + Delta-G solvation = -2871.108167 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.23622 -39.50065 -37.43929 -36.68652 -34.25529 -31.88204 -31.02785 -30.50340 -27.01258 -26.24601 -24.57735 -24.39240 -23.30646 -21.41023 -20.28531 -19.66235 -18.31398 -17.39234 -16.94161 -16.46640 -16.23681 -15.77099 -15.64487 -15.36210 -15.08642 -14.88189 -14.34465 -14.27451 -13.51630 -13.50424 -13.29082 -13.21594 -13.01969 -12.53783 -12.40412 -12.25261 -12.13352 -11.99361 -11.78698 -11.61910 -11.16290 -11.04984 -10.82276 -9.73160 -9.41314 -9.03294 -8.05837 -5.38368 0.47049 0.54834 1.26421 1.32212 1.38039 2.19318 2.41950 2.84759 3.25809 3.44908 3.52123 3.60000 3.70771 3.86228 3.90413 3.99668 4.14636 4.24658 4.33162 4.51027 4.60429 4.66433 4.68769 4.70253 4.78892 4.94079 4.96610 5.02351 5.03919 5.15776 5.20759 5.34832 5.43845 5.59771 5.72135 5.79179 5.97028 6.17473 6.55440 7.03584 7.77381 7.99127 9.15468 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.015864 B = 0.010623 C = 0.007396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.614896 B = 2635.142587 C = 3784.831654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.980 5.980 2 C -0.060 4.060 3 Si 0.934 3.066 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.245 1.245 7 C -0.221 4.221 8 H 0.061 0.939 9 N -0.743 5.743 10 C 0.210 3.790 11 H 0.058 0.942 12 C -0.141 4.141 13 C 0.085 3.915 14 C -0.104 4.104 15 C -0.125 4.125 16 C -0.179 4.179 17 O -0.295 6.295 18 C 0.114 3.886 19 C -0.163 4.163 20 C -0.088 4.088 21 C -0.164 4.164 22 C -0.086 4.086 23 C -0.174 4.174 24 H 0.257 0.743 25 H 0.370 0.630 26 H 0.096 0.904 27 H 0.096 0.904 28 H 0.120 0.880 29 H 0.093 0.907 30 H 0.086 0.914 31 H 0.090 0.910 32 H 0.046 0.954 33 H 0.086 0.914 34 H 0.146 0.854 35 H 0.160 0.840 36 H 0.137 0.863 37 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.680 -4.527 -2.939 18.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.631 5.631 2 C -0.251 4.251 3 Si 0.762 3.238 4 H -0.213 1.213 5 H -0.218 1.218 6 H -0.170 1.170 7 C -0.352 4.352 8 H 0.079 0.921 9 N -0.388 5.388 10 C 0.102 3.898 11 H 0.076 0.924 12 C -0.179 4.179 13 C 0.046 3.954 14 C -0.141 4.141 15 C -0.162 4.162 16 C -0.217 4.217 17 O -0.209 6.209 18 C 0.069 3.931 19 C -0.181 4.181 20 C -0.106 4.106 21 C -0.182 4.182 22 C -0.105 4.105 23 C -0.178 4.178 24 H 0.066 0.934 25 H 0.208 0.792 26 H 0.114 0.886 27 H 0.114 0.886 28 H 0.138 0.862 29 H 0.112 0.888 30 H 0.104 0.896 31 H 0.108 0.892 32 H 0.065 0.935 33 H 0.105 0.895 34 H 0.164 0.836 35 H 0.178 0.822 36 H 0.155 0.845 37 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 17.668 -4.580 -2.958 18.490 hybrid contribution -0.924 1.128 0.018 1.458 sum 16.745 -3.452 -2.940 17.348 Atomic orbital electron populations 1.69854 1.06835 1.26431 1.59938 1.25361 0.95996 1.00660 1.03115 0.85757 0.79280 0.80816 0.77941 1.21271 1.21821 1.16983 1.19033 0.82453 0.93430 1.40318 0.92104 1.43149 1.02632 1.03594 1.89454 1.19247 0.92550 0.87910 0.90137 0.92418 1.22380 0.94071 1.02593 0.98831 1.22656 0.99232 0.89819 0.83660 1.23013 0.94757 0.95387 1.00982 1.22837 0.93079 0.98949 1.01331 1.23639 0.99176 0.97245 1.01608 1.85873 1.31136 1.64722 1.39178 1.18948 0.86214 0.94996 0.92941 1.20813 1.01294 1.03870 0.92144 1.21203 0.91546 0.97271 1.00563 1.21270 0.99493 1.03064 0.94344 1.21056 0.96913 0.96373 0.96153 1.20818 0.94125 1.02844 0.99998 0.93422 0.79220 0.88563 0.88579 0.86231 0.88810 0.89589 0.89172 0.93511 0.89547 0.83649 0.82247 0.84515 0.88050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.20 13.97 21.65 0.30 -62.90 16 2 C -0.06 -3.56 5.50 84.86 0.47 -3.10 16 3 Si 0.93 45.91 27.73 68.60 1.90 47.81 16 4 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 5 H -0.29 -14.38 7.11 99.48 0.71 -13.67 16 6 H -0.25 -10.64 5.76 99.48 0.57 -10.07 16 7 C -0.22 -12.62 10.13 84.03 0.85 -11.77 16 8 H 0.06 3.77 7.61 -2.91 -0.02 3.75 16 9 N -0.74 -35.11 4.73 -326.26 -1.54 -36.66 16 10 C 0.21 8.36 2.78 44.30 0.12 8.48 16 11 H 0.06 2.40 8.06 -2.39 -0.02 2.38 16 12 C -0.14 -4.33 5.06 30.64 0.16 -4.18 16 13 C 0.08 2.49 1.05 -10.62 -0.01 2.48 16 14 C -0.10 -2.16 7.49 30.97 0.23 -1.93 16 15 C -0.12 -2.82 8.04 31.18 0.25 -2.57 16 16 C -0.18 -5.64 5.45 30.98 0.17 -5.47 16 17 O -0.29 -9.55 9.96 -94.07 -0.94 -10.49 16 18 C 0.11 4.03 6.51 22.51 0.15 4.18 16 19 C -0.16 -4.90 9.92 22.42 0.22 -4.68 16 20 C -0.09 -2.44 10.04 22.21 0.22 -2.22 16 21 C -0.16 -5.29 10.04 22.23 0.22 -5.07 16 22 C -0.09 -3.39 9.36 22.32 0.21 -3.18 16 23 C -0.17 -6.83 5.31 -19.74 -0.10 -6.93 16 24 H 0.26 15.85 8.31 -92.71 -0.77 15.08 16 25 H 0.37 16.70 2.12 -92.70 -0.20 16.51 16 26 H 0.10 2.77 8.14 -2.39 -0.02 2.75 16 27 H 0.10 2.57 8.14 -2.38 -0.02 2.55 16 28 H 0.12 1.98 8.10 -2.38 -0.02 1.97 16 29 H 0.09 1.69 8.14 -2.38 -0.02 1.67 16 30 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.05 1.73 8.14 -2.38 -0.02 1.71 16 33 H 0.09 2.88 5.98 -2.38 -0.01 2.86 16 34 H 0.15 3.59 8.06 -2.91 -0.02 3.56 16 35 H 0.16 3.13 8.06 -2.91 -0.02 3.11 16 36 H 0.14 3.75 8.06 -2.91 -0.02 3.73 16 37 H 0.10 4.35 7.61 -2.91 -0.02 4.33 16 Total: -1.00 -69.43 293.87 3.62 -65.81 By element: Atomic # 1 Polarization: 31.64 SS G_CDS: 0.74 Total: 32.37 kcal Atomic # 6 Polarization: -39.10 SS G_CDS: 3.16 Total: -35.95 kcal Atomic # 7 Polarization: -98.32 SS G_CDS: -1.24 Total: -99.56 kcal Atomic # 8 Polarization: -9.55 SS G_CDS: -0.94 Total: -10.49 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 1.90 Total: 47.81 kcal Total: -69.43 3.62 -65.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932216537.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.719 kcal (2) G-P(sol) polarization free energy of solvation -69.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds