Wall clock time and date at job start Mon Mar 30 2020 00:18:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38253 * 120.00457 * 2 1 4 4 C 1.38207 * 120.00517 * 179.97438 * 3 2 1 5 5 C 1.38267 * 119.99793 * 359.84973 * 4 3 2 6 6 C 1.38215 * 119.99479 * 0.40145 * 5 4 3 7 7 C 1.50704 * 119.99778 * 179.81199 * 6 5 4 8 8 H 1.09002 * 115.56408 * 154.03122 * 7 6 5 9 9 C 1.53078 * 117.49129 * 8.32622 * 7 6 5 10 10 C 1.52997 * 117.49570 * 299.72537 * 7 6 5 11 11 H 1.09005 * 117.50355 * 359.97430 * 10 7 6 12 12 C 1.50709 * 117.49805 * 214.97783 * 10 7 6 13 13 O 1.21281 * 119.99753 * 0.08740 * 12 10 7 14 14 N 1.34778 * 120.00069 * 180.08728 * 12 10 7 15 15 C 1.46493 * 119.99700 * 180.02562 * 14 12 10 16 16 C 1.50706 * 109.47128 * 179.97438 * 15 14 12 17 17 H 1.08000 * 119.99302 * 359.97438 * 16 15 14 18 18 C 1.37871 * 120.00436 * 179.72498 * 16 15 14 19 19 N 1.31515 * 119.99684 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00405 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47154 * 89.99418 * 20 18 16 22 22 H 1.48493 * 109.47010 * 209.99942 * 20 18 16 23 23 H 1.48502 * 109.46736 * 329.99638 * 20 18 16 24 24 C 1.38213 * 119.99504 * 180.02562 * 2 1 3 25 25 H 1.09000 * 109.47108 * 269.98770 * 1 2 3 26 26 H 1.09001 * 109.46530 * 29.98568 * 1 2 3 27 27 H 1.08998 * 109.47035 * 149.98374 * 1 2 3 28 28 H 1.08000 * 119.99725 * 359.97438 * 3 2 1 29 29 H 1.07997 * 120.00626 * 180.02562 * 4 3 2 30 30 H 1.07999 * 119.99987 * 180.21230 * 5 4 3 31 31 H 1.09000 * 117.51392 * 145.04065 * 9 7 6 32 32 H 1.08993 * 117.51480 * 359.97438 * 9 7 6 33 33 H 0.97005 * 119.99770 * 359.97438 * 14 12 10 34 34 H 1.09001 * 109.47786 * 60.00101 * 15 14 12 35 35 H 1.08998 * 109.47558 * 299.99963 * 15 14 12 36 36 H 0.97004 * 120.00247 * 180.02562 * 19 18 16 37 37 H 1.07996 * 120.00470 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2718 -0.0002 0.0042 6 6 3.5806 -1.1971 -0.0010 7 6 4.3340 -2.5023 -0.0013 8 1 3.8020 -3.3526 0.4254 9 6 5.8502 -2.4430 0.2009 10 6 5.2742 -2.7749 -1.1771 11 1 5.3476 -2.0104 -1.9507 12 6 5.3939 -4.1986 -1.6568 13 8 4.7565 -5.0766 -1.1148 14 7 6.2091 -4.4960 -2.6881 15 6 6.3249 -5.8798 -3.1546 16 6 7.2917 -5.9414 -4.3091 17 1 7.7714 -5.0398 -4.6603 18 6 7.5676 -7.1495 -4.9136 19 7 6.9875 -8.2481 -4.4823 20 14 8.7664 -7.2260 -6.3441 21 1 10.1399 -7.4532 -5.8273 22 1 8.3871 -8.3408 -7.2487 23 1 8.7252 -5.9445 -7.0934 24 6 2.1980 -1.1970 -0.0005 25 1 -0.3633 -0.0002 1.0277 26 1 -0.3632 0.8901 -0.5136 27 1 -0.3633 -0.8898 -0.5141 28 1 1.6584 2.1326 -0.0004 29 1 4.1206 2.1325 0.0010 30 1 5.3518 -0.0002 0.0081 31 1 6.3157 -3.2543 0.7606 32 1 6.3025 -1.4602 0.3337 33 1 6.7186 -3.7936 -3.1217 34 1 5.3477 -6.2365 -3.4802 35 1 6.6887 -6.5081 -2.3417 36 1 7.1818 -9.0982 -4.9073 37 1 1.6580 -2.1323 -0.0005 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118909210.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:18:39 Heat of formation + Delta-G solvation = -5.781747 kcal Electronic energy + Delta-G solvation = -17923.983165 eV Core-core repulsion = 15052.107778 eV Total energy + Delta-G solvation = -2871.875386 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.04941 -38.82498 -36.31053 -34.13985 -32.62616 -32.29702 -30.89418 -27.57884 -26.99543 -24.39215 -23.51835 -22.28434 -21.80764 -19.86351 -19.34953 -17.45195 -16.82330 -15.90917 -15.40530 -15.15080 -14.88454 -14.45965 -14.34455 -13.92903 -13.79170 -13.28546 -13.15558 -12.48152 -12.38279 -12.25912 -12.01627 -11.84950 -11.75217 -11.34146 -11.00549 -10.98959 -10.90692 -10.58638 -10.32250 -10.28373 -9.39985 -9.11799 -8.83313 -8.73736 -8.54130 -7.88252 -6.16742 -4.23700 1.20744 1.29316 3.09983 3.24314 3.30314 3.32919 3.58042 4.00349 4.17685 4.34634 4.63106 4.69859 4.80197 4.91250 5.00789 5.04693 5.18083 5.19499 5.23719 5.36020 5.42104 5.55903 5.57618 5.68553 5.77415 5.94684 6.00144 6.08353 6.14321 6.37611 6.48669 6.60268 6.91684 7.30492 7.43741 7.51291 7.66862 7.96851 8.63362 8.77873 9.10387 9.43009 10.93528 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.035759 B = 0.003321 C = 0.003280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.823618 B = 8427.945968 C = 8533.241382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.086 4.086 3 C -0.129 4.129 4 C -0.115 4.115 5 C -0.127 4.127 6 C -0.041 4.041 7 C -0.091 4.091 8 H 0.126 0.874 9 C -0.147 4.147 10 C -0.170 4.170 11 H 0.120 0.880 12 C 0.526 3.474 13 O -0.557 6.557 14 N -0.707 5.707 15 C 0.249 3.751 16 C -0.543 4.543 17 H 0.063 0.937 18 C 0.063 3.937 19 N -0.886 5.886 20 Si 0.904 3.096 21 H -0.279 1.279 22 H -0.284 1.284 23 H -0.272 1.272 24 C -0.111 4.111 25 H 0.069 0.931 26 H 0.065 0.935 27 H 0.067 0.933 28 H 0.118 0.882 29 H 0.121 0.879 30 H 0.124 0.876 31 H 0.104 0.896 32 H 0.104 0.896 33 H 0.392 0.608 34 H 0.027 0.973 35 H 0.027 0.973 36 H 0.266 0.734 37 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.275 19.056 9.049 22.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.086 4.086 3 C -0.147 4.147 4 C -0.133 4.133 5 C -0.145 4.145 6 C -0.041 4.041 7 C -0.110 4.110 8 H 0.144 0.856 9 C -0.184 4.184 10 C -0.191 4.191 11 H 0.138 0.862 12 C 0.311 3.689 13 O -0.436 6.436 14 N -0.354 5.354 15 C 0.128 3.872 16 C -0.582 4.582 17 H 0.081 0.919 18 C -0.140 4.140 19 N -0.523 5.523 20 Si 0.731 3.269 21 H -0.205 1.205 22 H -0.210 1.210 23 H -0.197 1.197 24 C -0.129 4.129 25 H 0.088 0.912 26 H 0.084 0.916 27 H 0.086 0.914 28 H 0.136 0.864 29 H 0.139 0.861 30 H 0.142 0.858 31 H 0.122 0.878 32 H 0.122 0.878 33 H 0.224 0.776 34 H 0.045 0.955 35 H 0.045 0.955 36 H 0.076 0.924 37 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -7.733 18.176 9.364 21.859 hybrid contribution 0.958 0.195 -1.114 1.483 sum -6.775 18.370 8.249 21.247 Atomic orbital electron populations 1.20795 0.91239 1.02821 1.02261 1.19904 0.96054 0.93074 0.99550 1.20993 0.94301 0.97359 1.02054 1.21081 0.94271 0.97808 1.00127 1.21072 1.00089 0.91899 1.01414 1.19181 0.93312 0.93109 0.98517 1.21077 0.91862 0.96506 1.01525 0.85598 1.23095 0.95177 1.03293 0.96856 1.22441 1.06362 0.97187 0.93135 0.86211 1.19495 0.80213 0.88393 0.80839 1.90647 1.46306 1.48978 1.57711 1.46391 1.43435 1.13044 1.32526 1.19124 0.97340 0.76198 0.94492 1.21228 1.26367 0.94338 1.16219 0.91869 1.24956 0.96280 0.95321 0.97485 1.69977 1.42330 0.98769 1.41247 0.86404 0.80886 0.77872 0.81696 1.20453 1.20990 1.19722 1.20919 0.93438 0.97819 1.00688 0.91227 0.91649 0.91389 0.86352 0.86143 0.85845 0.87758 0.87789 0.77581 0.95512 0.95503 0.92437 0.85803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.91 10.01 36.01 0.36 -0.55 16 2 C -0.09 -0.90 5.88 -104.62 -0.62 -1.51 16 3 C -0.13 -1.25 9.70 -39.59 -0.38 -1.64 16 4 C -0.11 -1.12 10.05 -39.58 -0.40 -1.52 16 5 C -0.13 -1.38 9.30 -39.58 -0.37 -1.74 16 6 C -0.04 -0.51 5.61 -104.62 -0.59 -1.10 16 7 C -0.09 -1.26 5.56 -91.73 -0.51 -1.77 16 8 H 0.13 1.93 7.67 -51.93 -0.40 1.53 16 9 C -0.15 -1.84 9.57 -26.69 -0.26 -2.09 16 10 C -0.17 -2.55 5.82 -91.77 -0.53 -3.09 16 11 H 0.12 1.58 8.14 -51.93 -0.42 1.16 16 12 C 0.53 10.79 7.61 -10.98 -0.08 10.71 16 13 O -0.56 -13.62 16.26 5.56 0.09 -13.53 16 14 N -0.71 -15.24 5.55 -61.47 -0.34 -15.58 16 15 C 0.25 6.70 5.43 -5.19 -0.03 6.67 16 16 C -0.54 -14.88 9.28 -34.44 -0.32 -15.20 16 17 H 0.06 1.62 7.60 -52.49 -0.40 1.22 16 18 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 19 N -0.89 -26.27 13.29 55.43 0.74 -25.53 16 20 Si 0.90 20.95 29.54 -169.99 -5.02 15.93 16 21 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 24 C -0.11 -1.33 9.39 -39.58 -0.37 -1.70 16 25 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.06 0.44 8.09 -51.93 -0.42 0.02 16 27 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 28 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 29 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 30 H 0.12 1.14 6.02 -52.49 -0.32 0.83 16 31 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 32 H 0.10 1.02 6.17 -51.93 -0.32 0.70 16 33 H 0.39 7.26 8.32 -40.82 -0.34 6.92 16 34 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 37 H 0.12 1.43 8.06 -52.49 -0.42 1.00 16 LS Contribution 319.76 15.07 4.82 4.82 Total: -1.00 -32.33 319.76 -9.04 -41.37 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -5.13 Total: 5.41 kcal Atomic # 6 Polarization: -8.68 SS G_CDS: -4.19 Total: -12.87 kcal Atomic # 7 Polarization: -41.51 SS G_CDS: 0.40 Total: -41.12 kcal Atomic # 8 Polarization: -13.62 SS G_CDS: 0.09 Total: -13.53 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -32.33 -9.04 -41.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118909210.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.587 kcal (2) G-P(sol) polarization free energy of solvation -32.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds