Wall clock time and date at job start Mon Mar 30 2020 00:18:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38253 * 120.00457 * 2 1 4 4 C 1.38207 * 120.00517 * 179.97438 * 3 2 1 5 5 C 1.38267 * 119.99793 * 359.84973 * 4 3 2 6 6 C 1.38215 * 119.99479 * 0.40145 * 5 4 3 7 7 C 1.50704 * 119.99778 * 179.81199 * 6 5 4 8 8 H 1.09002 * 115.56408 * 154.03122 * 7 6 5 9 9 C 1.53078 * 117.49129 * 8.32622 * 7 6 5 10 10 C 1.52997 * 117.49570 * 299.72537 * 7 6 5 11 11 H 1.09005 * 117.50355 * 359.97430 * 10 7 6 12 12 C 1.50709 * 117.49805 * 214.97783 * 10 7 6 13 13 O 1.21281 * 119.99753 * 0.08740 * 12 10 7 14 14 N 1.34778 * 120.00069 * 180.08728 * 12 10 7 15 15 C 1.46493 * 119.99700 * 180.02562 * 14 12 10 16 16 C 1.50706 * 109.47128 * 179.97438 * 15 14 12 17 17 H 1.08000 * 119.99302 * 359.97438 * 16 15 14 18 18 C 1.37871 * 120.00436 * 179.72498 * 16 15 14 19 19 N 1.31515 * 119.99684 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00405 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47154 * 89.99418 * 20 18 16 22 22 H 1.48493 * 109.47010 * 209.99942 * 20 18 16 23 23 H 1.48502 * 109.46736 * 329.99638 * 20 18 16 24 24 C 1.38213 * 119.99504 * 180.02562 * 2 1 3 25 25 H 1.09000 * 109.47108 * 269.98770 * 1 2 3 26 26 H 1.09001 * 109.46530 * 29.98568 * 1 2 3 27 27 H 1.08998 * 109.47035 * 149.98374 * 1 2 3 28 28 H 1.08000 * 119.99725 * 359.97438 * 3 2 1 29 29 H 1.07997 * 120.00626 * 180.02562 * 4 3 2 30 30 H 1.07999 * 119.99987 * 180.21230 * 5 4 3 31 31 H 1.09000 * 117.51392 * 145.04065 * 9 7 6 32 32 H 1.08993 * 117.51480 * 359.97438 * 9 7 6 33 33 H 0.97005 * 119.99770 * 359.97438 * 14 12 10 34 34 H 1.09001 * 109.47786 * 60.00101 * 15 14 12 35 35 H 1.08998 * 109.47558 * 299.99963 * 15 14 12 36 36 H 0.97004 * 120.00247 * 180.02562 * 19 18 16 37 37 H 1.07996 * 120.00470 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2718 -0.0002 0.0042 6 6 3.5806 -1.1971 -0.0010 7 6 4.3340 -2.5023 -0.0013 8 1 3.8020 -3.3526 0.4254 9 6 5.8502 -2.4430 0.2009 10 6 5.2742 -2.7749 -1.1771 11 1 5.3476 -2.0104 -1.9507 12 6 5.3939 -4.1986 -1.6568 13 8 4.7565 -5.0766 -1.1148 14 7 6.2091 -4.4960 -2.6881 15 6 6.3249 -5.8798 -3.1546 16 6 7.2917 -5.9414 -4.3091 17 1 7.7714 -5.0398 -4.6603 18 6 7.5676 -7.1495 -4.9136 19 7 6.9875 -8.2481 -4.4823 20 14 8.7664 -7.2260 -6.3441 21 1 10.1399 -7.4532 -5.8273 22 1 8.3871 -8.3408 -7.2487 23 1 8.7252 -5.9445 -7.0934 24 6 2.1980 -1.1970 -0.0005 25 1 -0.3633 -0.0002 1.0277 26 1 -0.3632 0.8901 -0.5136 27 1 -0.3633 -0.8898 -0.5141 28 1 1.6584 2.1326 -0.0004 29 1 4.1206 2.1325 0.0010 30 1 5.3518 -0.0002 0.0081 31 1 6.3157 -3.2543 0.7606 32 1 6.3025 -1.4602 0.3337 33 1 6.7186 -3.7936 -3.1217 34 1 5.3477 -6.2365 -3.4802 35 1 6.6887 -6.5081 -2.3417 36 1 7.1818 -9.0982 -4.9073 37 1 1.6580 -2.1323 -0.0005 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118909210.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:18:38 Heat of formation + Delta-G solvation = -25.529382 kcal Electronic energy + Delta-G solvation = -17924.839486 eV Core-core repulsion = 15052.107778 eV Total energy + Delta-G solvation = -2872.731708 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.22155 -40.11746 -37.54512 -36.12159 -34.36522 -33.36967 -31.76322 -29.58836 -27.73752 -26.00303 -24.55851 -23.77210 -22.91011 -21.30890 -20.53994 -19.06124 -18.01664 -17.45668 -17.04784 -16.40197 -16.19161 -15.95197 -15.78426 -14.90674 -14.83303 -14.61073 -14.11452 -14.01554 -13.95435 -13.53542 -13.18544 -13.00294 -12.95871 -12.79131 -12.71800 -12.24449 -12.19511 -11.84224 -11.59852 -11.48611 -11.41766 -10.83494 -10.82525 -9.88312 -9.64050 -9.39704 -8.31040 -6.48209 0.38433 0.50213 1.42299 1.45005 1.56403 1.57060 2.28156 2.48317 2.70140 3.03551 3.09539 3.57031 3.71500 3.87945 3.98261 4.08707 4.16993 4.23053 4.26746 4.52158 4.55470 4.72972 4.83102 4.85139 4.94591 5.02159 5.07435 5.10039 5.18568 5.19750 5.33100 5.45521 5.60560 5.65846 5.70738 5.74687 5.81850 6.15139 6.62348 6.86217 7.20818 7.43795 8.81346 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.035759 B = 0.003321 C = 0.003280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.823618 B = 8427.945968 C = 8533.241382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.095 4.095 3 C -0.131 4.131 4 C -0.115 4.115 5 C -0.130 4.130 6 C -0.058 4.058 7 C -0.090 4.090 8 H 0.099 0.901 9 C -0.122 4.122 10 C -0.176 4.176 11 H 0.147 0.853 12 C 0.521 3.479 13 O -0.605 6.605 14 N -0.702 5.702 15 C 0.265 3.735 16 C -0.557 4.557 17 H 0.085 0.915 18 C 0.003 3.997 19 N -0.932 5.932 20 Si 0.987 3.013 21 H -0.269 1.269 22 H -0.284 1.284 23 H -0.255 1.255 24 C -0.135 4.135 25 H 0.078 0.922 26 H 0.081 0.919 27 H 0.062 0.938 28 H 0.144 0.856 29 H 0.149 0.851 30 H 0.143 0.857 31 H 0.094 0.906 32 H 0.144 0.856 33 H 0.409 0.591 34 H -0.014 1.014 35 H -0.012 1.012 36 H 0.269 0.731 37 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.043 22.560 8.412 24.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.095 4.095 3 C -0.149 4.149 4 C -0.133 4.133 5 C -0.148 4.148 6 C -0.058 4.058 7 C -0.109 4.109 8 H 0.117 0.883 9 C -0.159 4.159 10 C -0.197 4.197 11 H 0.165 0.835 12 C 0.309 3.691 13 O -0.488 6.488 14 N -0.350 5.350 15 C 0.143 3.857 16 C -0.595 4.595 17 H 0.103 0.897 18 C -0.197 4.197 19 N -0.570 5.570 20 Si 0.810 3.190 21 H -0.195 1.195 22 H -0.209 1.209 23 H -0.179 1.179 24 C -0.153 4.153 25 H 0.097 0.903 26 H 0.099 0.901 27 H 0.081 0.919 28 H 0.161 0.839 29 H 0.167 0.833 30 H 0.161 0.839 31 H 0.113 0.887 32 H 0.162 0.838 33 H 0.245 0.755 34 H 0.004 0.996 35 H 0.006 0.994 36 H 0.078 0.922 37 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -6.495 21.734 8.734 24.307 hybrid contribution 0.476 -0.880 -0.829 1.299 sum -6.018 20.854 7.905 23.100 Atomic orbital electron populations 1.20838 0.89810 1.03385 1.03038 1.20195 0.97316 0.92863 0.99079 1.21368 0.94752 0.97924 1.00806 1.21459 0.94472 0.98546 0.98782 1.21292 1.01101 0.91449 1.00946 1.19126 0.93369 0.92883 1.00390 1.20985 0.92795 0.96758 1.00347 0.88332 1.23265 0.94166 1.04811 0.93680 1.22310 1.09006 0.93447 0.94893 0.83494 1.20476 0.78501 0.90544 0.79564 1.90621 1.47888 1.51278 1.58977 1.46137 1.44284 1.11393 1.33209 1.18572 0.95134 0.78542 0.93487 1.21613 1.26325 0.95408 1.16128 0.89741 1.26100 0.98200 0.94698 1.00674 1.70143 1.44154 0.99653 1.43063 0.85122 0.77979 0.78459 0.77457 1.19475 1.20911 1.17859 1.21034 0.93812 0.98319 1.02121 0.90292 0.90050 0.91874 0.83864 0.83305 0.83946 0.88714 0.83833 0.75473 0.99588 0.99399 0.92191 0.86939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.66 10.01 71.24 0.71 -0.95 16 2 C -0.09 -1.85 5.88 -19.87 -0.12 -1.96 16 3 C -0.13 -2.15 9.70 22.27 0.22 -1.93 16 4 C -0.11 -1.82 10.05 22.27 0.22 -1.60 16 5 C -0.13 -2.43 9.30 22.27 0.21 -2.22 16 6 C -0.06 -1.37 5.61 -19.86 -0.11 -1.48 16 7 C -0.09 -2.48 5.56 -11.51 -0.06 -2.55 16 8 H 0.10 3.24 7.67 -2.39 -0.02 3.22 16 9 C -0.12 -2.84 9.57 30.62 0.29 -2.55 16 10 C -0.18 -5.14 5.82 -11.54 -0.07 -5.20 16 11 H 0.15 3.51 8.14 -2.38 -0.02 3.49 16 12 C 0.52 22.08 7.61 87.66 0.67 22.75 16 13 O -0.60 -31.49 16.26 -3.03 -0.05 -31.54 16 14 N -0.70 -30.96 5.55 -466.78 -2.59 -33.55 16 15 C 0.27 14.99 5.43 85.64 0.46 15.46 16 16 C -0.56 -30.82 9.28 25.60 0.24 -30.58 16 17 H 0.08 4.21 7.60 -2.91 -0.02 4.19 16 18 C 0.00 0.16 5.46 84.65 0.46 0.62 16 19 N -0.93 -56.91 13.29 21.45 0.28 -56.63 16 20 Si 0.99 42.62 29.54 68.60 2.03 44.64 16 21 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 22 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 23 H -0.25 -10.22 7.11 99.48 0.71 -9.51 16 24 C -0.13 -3.24 9.39 22.27 0.21 -3.03 16 25 H 0.08 0.99 8.14 -2.39 -0.02 0.98 16 26 H 0.08 0.91 8.09 -2.39 -0.02 0.89 16 27 H 0.06 0.96 8.09 -2.39 -0.02 0.95 16 28 H 0.14 1.59 8.06 -2.91 -0.02 1.57 16 29 H 0.15 1.49 8.06 -2.91 -0.02 1.47 16 30 H 0.14 2.01 6.02 -2.91 -0.02 1.99 16 31 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 32 H 0.14 2.22 6.17 -2.39 -0.01 2.20 16 33 H 0.41 14.92 8.32 -92.70 -0.77 14.15 16 34 H -0.01 -0.88 8.14 -2.39 -0.02 -0.90 16 35 H -0.01 -0.76 8.14 -2.39 -0.02 -0.77 16 36 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 37 H 0.11 2.80 8.06 -2.91 -0.02 2.78 16 Total: -1.00 -73.89 319.76 3.31 -70.58 By element: Atomic # 1 Polarization: 21.42 SS G_CDS: 0.30 Total: 21.72 kcal Atomic # 6 Polarization: -18.56 SS G_CDS: 3.33 Total: -15.22 kcal Atomic # 7 Polarization: -87.88 SS G_CDS: -2.30 Total: -90.18 kcal Atomic # 8 Polarization: -31.49 SS G_CDS: -0.05 Total: -31.54 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.64 kcal Total: -73.89 3.31 -70.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118909210.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.050 kcal (2) G-P(sol) polarization free energy of solvation -73.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds