Wall clock time and date at job start Sun Mar 29 2020 23:47:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30669 * 1 3 3 Si 1.86799 * 119.99826 * 2 1 4 4 H 1.48498 * 109.47071 * 269.99751 * 3 2 1 5 5 H 1.48503 * 109.47262 * 29.99840 * 3 2 1 6 6 H 1.48500 * 109.47139 * 149.99965 * 3 2 1 7 7 C 1.40050 * 120.00120 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00101 * 179.97438 * 7 2 1 9 9 C 1.46376 * 120.00100 * 0.02562 * 7 2 1 10 10 O 1.21689 * 119.99612 * 359.97438 * 9 7 2 11 11 N 1.34770 * 120.00151 * 179.97438 * 9 7 2 12 12 C 1.46504 * 120.00273 * 179.97438 * 11 9 7 13 13 C 1.52995 * 109.47232 * 179.97438 * 12 11 9 14 14 H 1.09008 * 115.55064 * 330.66955 * 13 12 11 15 15 C 1.53069 * 117.53250 * 116.38434 * 13 12 11 16 16 C 1.53000 * 117.49920 * 185.00174 * 13 12 11 17 17 H 1.09002 * 117.49833 * 359.97438 * 16 13 12 18 18 C 1.52996 * 117.50107 * 144.97535 * 16 13 12 19 19 C 1.50701 * 109.47519 * 184.91198 * 18 16 13 20 20 C 1.38236 * 119.99850 * 269.72852 * 19 18 16 21 21 C 1.38238 * 119.99486 * 179.80375 * 20 19 18 22 22 C 1.38228 * 120.00320 * 0.40071 * 21 20 19 23 23 C 1.38238 * 119.99831 * 359.85004 * 22 21 20 24 24 C 1.38232 * 120.00297 * 359.95837 * 23 22 21 25 25 H 0.96996 * 120.00870 * 0.02562 * 1 2 3 26 26 H 0.97004 * 119.99989 * 359.97438 * 11 9 7 27 27 H 1.09001 * 109.46551 * 59.99966 * 12 11 9 28 28 H 1.08997 * 109.47036 * 300.00015 * 12 11 9 29 29 H 1.09000 * 117.51640 * 359.97438 * 15 13 12 30 30 H 1.08999 * 117.49573 * 214.95303 * 15 13 12 31 31 H 1.09002 * 109.47136 * 304.91382 * 18 16 13 32 32 H 1.09004 * 109.47386 * 64.91055 * 18 16 13 33 33 H 1.07993 * 120.00097 * 359.97438 * 20 19 18 34 34 H 1.07997 * 119.99426 * 180.22799 * 21 20 19 35 35 H 1.08001 * 120.00100 * 179.83075 * 22 21 20 36 36 H 1.08005 * 119.99748 * 179.97438 * 23 22 21 37 37 H 1.08000 * 119.99950 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 2.4882 2.0464 -1.4001 5 1 1.4380 2.6527 0.7000 6 1 3.5382 1.4402 0.7000 7 6 2.0070 -1.2129 0.0005 8 1 3.0870 -1.2128 0.0001 9 6 1.2751 -2.4805 0.0005 10 8 0.0582 -2.4805 0.0005 11 7 1.9490 -3.6477 0.0005 12 6 1.2165 -4.9165 0.0011 13 6 2.2108 -6.0793 0.0003 14 1 3.1676 -5.8795 -0.4822 15 6 2.2131 -7.0091 1.2163 16 6 1.6422 -7.4948 -0.1175 17 1 0.5598 -7.5977 -0.1941 18 6 2.4599 -8.5214 -0.9040 19 6 1.6834 -9.8087 -1.0084 20 6 1.8300 -10.7848 -0.0406 21 6 1.1146 -11.9639 -0.1343 22 6 0.2590 -12.1704 -1.2001 23 6 0.1163 -11.1965 -2.1706 24 6 0.8286 -10.0157 -2.0749 25 1 -0.4851 0.8399 -0.0004 26 1 2.9190 -3.6477 0.0002 27 1 0.5896 -4.9743 -0.8887 28 1 0.5903 -4.9740 0.8913 29 1 1.5065 -6.7922 2.0174 30 1 3.1714 -7.4206 1.5333 31 1 2.6614 -8.1365 -1.9037 32 1 3.4027 -8.7065 -0.3891 33 1 2.5013 -10.6250 0.7901 34 1 1.2264 -12.7250 0.6238 35 1 -0.2979 -13.0928 -1.2747 36 1 -0.5520 -11.3580 -3.0036 37 1 0.7174 -9.2550 -2.8334 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001124126973.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:47:35 Heat of formation + Delta-G solvation = -6.135648 kcal Electronic energy + Delta-G solvation = -17709.473260 eV Core-core repulsion = 14837.582527 eV Total energy + Delta-G solvation = -2871.890733 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.54884 -38.04956 -36.73990 -33.28181 -32.44691 -31.81149 -31.02355 -27.75689 -26.64631 -24.83929 -22.71299 -21.99546 -20.70548 -20.28445 -19.54791 -17.18482 -16.86775 -15.54838 -15.30668 -15.26317 -14.98000 -14.32109 -13.86746 -13.71739 -13.55182 -13.47586 -13.10042 -12.69889 -12.41809 -12.17779 -11.70741 -11.35462 -11.25558 -11.16647 -11.11689 -10.94334 -10.88849 -10.44245 -10.21237 -9.85027 -9.69536 -9.06292 -8.83043 -8.78701 -7.57653 -7.43493 -6.15413 -4.60767 1.21583 1.25986 3.15952 3.22477 3.26087 3.62630 3.85175 4.13551 4.52284 4.62455 4.72518 4.79415 4.87961 4.98137 4.99081 5.03365 5.29981 5.35992 5.43052 5.45721 5.66727 5.68459 5.74324 5.84645 5.89498 5.93468 5.95841 6.17962 6.28858 6.35155 6.36525 6.52859 6.54484 6.67598 6.87206 7.46245 7.97703 8.15386 8.37030 9.05500 9.58821 10.63757 10.82598 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.052289 B = 0.002936 C = 0.002874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.360592 B = 9534.465811 C = 9740.374217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.087 3.913 3 Si 0.908 3.092 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.265 1.265 7 C -0.546 4.546 8 H 0.067 0.933 9 C 0.554 3.446 10 O -0.583 6.583 11 N -0.766 5.766 12 C 0.163 3.837 13 C -0.150 4.150 14 H 0.106 0.894 15 C -0.173 4.173 16 C -0.143 4.143 17 H 0.105 0.895 18 C -0.051 4.051 19 C -0.073 4.073 20 C -0.115 4.115 21 C -0.121 4.121 22 C -0.129 4.129 23 C -0.120 4.120 24 C -0.117 4.117 25 H 0.268 0.732 26 H 0.380 0.620 27 H 0.051 0.949 28 H 0.048 0.952 29 H 0.094 0.906 30 H 0.091 0.909 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.121 0.879 34 H 0.119 0.881 35 H 0.118 0.882 36 H 0.120 0.880 37 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.245 -20.851 -1.550 21.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.133 4.133 3 Si 0.733 3.267 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.583 4.583 8 H 0.085 0.915 9 C 0.358 3.642 10 O -0.466 6.466 11 N -0.421 5.421 12 C 0.038 3.962 13 C -0.168 4.168 14 H 0.124 0.876 15 C -0.210 4.210 16 C -0.162 4.162 17 H 0.123 0.877 18 C -0.088 4.088 19 C -0.073 4.073 20 C -0.133 4.133 21 C -0.139 4.139 22 C -0.147 4.147 23 C -0.138 4.138 24 C -0.135 4.135 25 H 0.079 0.921 26 H 0.211 0.789 27 H 0.069 0.931 28 H 0.067 0.933 29 H 0.113 0.887 30 H 0.109 0.891 31 H 0.095 0.905 32 H 0.091 0.909 33 H 0.139 0.861 34 H 0.137 0.863 35 H 0.136 0.864 36 H 0.138 0.862 37 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 4.147 -20.743 -1.543 21.209 hybrid contribution 0.862 0.720 0.035 1.123 sum 5.008 -20.022 -1.508 20.694 Atomic orbital electron populations 1.70022 1.07065 1.27207 1.35511 1.25715 0.94612 1.00290 0.92649 0.86376 0.80139 0.81437 0.78797 1.19762 1.20479 1.18933 1.20891 0.93561 0.89434 1.54397 0.91452 1.18222 0.87205 0.82484 0.76320 1.90596 1.14142 1.86935 1.54903 1.46108 1.08529 1.04804 1.82703 1.20419 0.92687 0.82652 1.00472 1.22700 1.01152 0.90909 1.02051 0.87603 1.23222 1.02314 1.03812 0.91629 1.22310 0.99652 0.94492 0.99711 0.87675 1.20214 0.96868 0.90854 1.00859 1.19901 0.97244 0.95560 0.94585 1.21067 1.00032 0.93605 0.98634 1.21132 0.97046 0.97503 0.98222 1.21124 0.99265 0.99301 0.95043 1.21154 0.99527 0.94032 0.99048 1.21131 0.96658 0.97468 0.98218 0.92144 0.78859 0.93115 0.93336 0.88742 0.89073 0.90473 0.90885 0.86146 0.86291 0.86383 0.86196 0.85916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.49 11.83 55.55 0.66 -22.83 16 2 C 0.09 2.46 5.50 -17.37 -0.10 2.37 16 3 Si 0.91 20.37 29.56 -169.99 -5.02 15.34 16 4 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 5 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 6 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 7 C -0.55 -15.69 9.54 -35.63 -0.34 -16.03 16 8 H 0.07 1.77 7.85 -52.48 -0.41 1.35 16 9 C 0.55 16.16 7.75 -12.99 -0.10 16.06 16 10 O -0.58 -19.38 15.02 5.20 0.08 -19.31 16 11 N -0.77 -17.55 5.55 -61.72 -0.34 -17.89 16 12 C 0.16 3.21 5.96 -4.04 -0.02 3.19 16 13 C -0.15 -2.16 5.57 -90.59 -0.50 -2.66 16 14 H 0.11 1.43 8.04 -51.92 -0.42 1.01 16 15 C -0.17 -2.16 9.83 -26.69 -0.26 -2.42 16 16 C -0.14 -1.76 5.44 -90.62 -0.49 -2.25 16 17 H 0.11 1.40 8.07 -51.93 -0.42 0.98 16 18 C -0.05 -0.53 5.63 -27.88 -0.16 -0.68 16 19 C -0.07 -0.77 5.09 -104.62 -0.53 -1.30 16 20 C -0.12 -1.14 9.70 -39.58 -0.38 -1.53 16 21 C -0.12 -1.11 10.05 -39.59 -0.40 -1.50 16 22 C -0.13 -1.17 10.05 -39.59 -0.40 -1.56 16 23 C -0.12 -1.14 10.05 -39.58 -0.40 -1.53 16 24 C -0.12 -1.21 9.70 -39.58 -0.38 -1.60 16 25 H 0.27 7.40 8.29 -40.82 -0.34 7.06 16 26 H 0.38 7.60 8.38 -40.82 -0.34 7.26 16 27 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.05 1.02 7.88 -51.93 -0.41 0.62 16 29 H 0.09 1.24 8.04 -51.93 -0.42 0.82 16 30 H 0.09 0.98 8.03 -51.93 -0.42 0.56 16 31 H 0.08 0.78 8.09 -51.93 -0.42 0.36 16 32 H 0.07 0.68 7.82 -51.93 -0.41 0.27 16 33 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 34 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 35 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 36 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 37 H 0.12 1.17 8.06 -52.49 -0.42 0.74 16 LS Contribution 322.03 15.07 4.85 4.85 Total: -1.00 -34.77 322.03 -9.58 -44.35 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: -5.33 Total: 6.95 kcal Atomic # 6 Polarization: -6.99 SS G_CDS: -4.47 Total: -11.46 kcal Atomic # 7 Polarization: -41.04 SS G_CDS: 0.31 Total: -40.72 kcal Atomic # 8 Polarization: -19.38 SS G_CDS: 0.08 Total: -19.31 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -34.77 -9.58 -44.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001124126973.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.215 kcal (2) G-P(sol) polarization free energy of solvation -34.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds