Wall clock time and date at job start Sun Mar 29 2020 23:47:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30669 * 1 3 3 Si 1.86799 * 119.99826 * 2 1 4 4 H 1.48498 * 109.47071 * 269.99751 * 3 2 1 5 5 H 1.48503 * 109.47262 * 29.99840 * 3 2 1 6 6 H 1.48500 * 109.47139 * 149.99965 * 3 2 1 7 7 C 1.40050 * 120.00120 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00101 * 179.97438 * 7 2 1 9 9 C 1.46376 * 120.00100 * 0.02562 * 7 2 1 10 10 O 1.21689 * 119.99612 * 359.97438 * 9 7 2 11 11 N 1.34770 * 120.00151 * 179.97438 * 9 7 2 12 12 C 1.46504 * 120.00273 * 179.97438 * 11 9 7 13 13 C 1.52995 * 109.47232 * 179.97438 * 12 11 9 14 14 H 1.09008 * 115.55064 * 330.66955 * 13 12 11 15 15 C 1.53069 * 117.53250 * 116.38434 * 13 12 11 16 16 C 1.53000 * 117.49920 * 185.00174 * 13 12 11 17 17 H 1.09002 * 117.49833 * 359.97438 * 16 13 12 18 18 C 1.52996 * 117.50107 * 144.97535 * 16 13 12 19 19 C 1.50701 * 109.47519 * 184.91198 * 18 16 13 20 20 C 1.38236 * 119.99850 * 269.72852 * 19 18 16 21 21 C 1.38238 * 119.99486 * 179.80375 * 20 19 18 22 22 C 1.38228 * 120.00320 * 0.40071 * 21 20 19 23 23 C 1.38238 * 119.99831 * 359.85004 * 22 21 20 24 24 C 1.38232 * 120.00297 * 359.95837 * 23 22 21 25 25 H 0.96996 * 120.00870 * 0.02562 * 1 2 3 26 26 H 0.97004 * 119.99989 * 359.97438 * 11 9 7 27 27 H 1.09001 * 109.46551 * 59.99966 * 12 11 9 28 28 H 1.08997 * 109.47036 * 300.00015 * 12 11 9 29 29 H 1.09000 * 117.51640 * 359.97438 * 15 13 12 30 30 H 1.08999 * 117.49573 * 214.95303 * 15 13 12 31 31 H 1.09002 * 109.47136 * 304.91382 * 18 16 13 32 32 H 1.09004 * 109.47386 * 64.91055 * 18 16 13 33 33 H 1.07993 * 120.00097 * 359.97438 * 20 19 18 34 34 H 1.07997 * 119.99426 * 180.22799 * 21 20 19 35 35 H 1.08001 * 120.00100 * 179.83075 * 22 21 20 36 36 H 1.08005 * 119.99748 * 179.97438 * 23 22 21 37 37 H 1.08000 * 119.99950 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 2.4882 2.0464 -1.4001 5 1 1.4380 2.6527 0.7000 6 1 3.5382 1.4402 0.7000 7 6 2.0070 -1.2129 0.0005 8 1 3.0870 -1.2128 0.0001 9 6 1.2751 -2.4805 0.0005 10 8 0.0582 -2.4805 0.0005 11 7 1.9490 -3.6477 0.0005 12 6 1.2165 -4.9165 0.0011 13 6 2.2108 -6.0793 0.0003 14 1 3.1676 -5.8795 -0.4822 15 6 2.2131 -7.0091 1.2163 16 6 1.6422 -7.4948 -0.1175 17 1 0.5598 -7.5977 -0.1941 18 6 2.4599 -8.5214 -0.9040 19 6 1.6834 -9.8087 -1.0084 20 6 1.8300 -10.7848 -0.0406 21 6 1.1146 -11.9639 -0.1343 22 6 0.2590 -12.1704 -1.2001 23 6 0.1163 -11.1965 -2.1706 24 6 0.8286 -10.0157 -2.0749 25 1 -0.4851 0.8399 -0.0004 26 1 2.9190 -3.6477 0.0002 27 1 0.5896 -4.9743 -0.8887 28 1 0.5903 -4.9740 0.8913 29 1 1.5065 -6.7922 2.0174 30 1 3.1714 -7.4206 1.5333 31 1 2.6614 -8.1365 -1.9037 32 1 3.4027 -8.7065 -0.3891 33 1 2.5013 -10.6250 0.7901 34 1 1.2264 -12.7250 0.6238 35 1 -0.2979 -13.0928 -1.2747 36 1 -0.5520 -11.3580 -3.0036 37 1 0.7174 -9.2550 -2.8334 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001124126973.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:47:35 Heat of formation + Delta-G solvation = -27.744753 kcal Electronic energy + Delta-G solvation = -17710.410301 eV Core-core repulsion = 14837.582527 eV Total energy + Delta-G solvation = -2872.827774 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.35997 -39.57400 -38.42589 -35.05709 -34.37315 -33.10805 -31.72238 -29.38895 -27.98703 -26.52818 -23.43235 -22.84689 -21.97217 -21.72378 -21.15032 -19.13939 -17.67132 -17.43355 -16.68974 -16.09375 -16.00684 -15.87253 -15.68346 -15.02708 -14.98156 -14.26098 -14.21360 -13.95061 -13.72746 -13.36870 -13.29219 -13.05387 -12.74143 -12.63381 -12.33901 -12.24079 -12.01207 -11.99075 -11.84508 -10.99758 -10.92084 -10.81740 -9.87741 -9.77963 -9.56209 -9.45823 -8.29661 -6.86589 0.48642 0.54259 1.40439 1.42424 1.57952 2.24815 2.46080 2.71670 2.92088 3.17258 3.61209 3.73888 3.86888 3.90920 4.08462 4.17565 4.24652 4.32800 4.37670 4.50150 4.63979 4.68317 4.69196 4.85172 4.92567 4.93163 4.95530 5.19120 5.22910 5.26918 5.31517 5.38275 5.62445 5.66524 5.78418 5.87079 6.17662 6.23991 6.27309 6.85827 7.55781 8.48427 8.66892 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.052289 B = 0.002936 C = 0.002874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.360592 B = 9534.465811 C = 9740.374217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.025 3.975 3 Si 1.002 2.998 4 H -0.261 1.261 5 H -0.273 1.273 6 H -0.247 1.247 7 C -0.573 4.573 8 H 0.090 0.910 9 C 0.534 3.466 10 O -0.637 6.637 11 N -0.752 5.752 12 C 0.166 3.834 13 C -0.160 4.160 14 H 0.123 0.877 15 C -0.160 4.160 16 C -0.128 4.128 17 H 0.090 0.910 18 C -0.044 4.044 19 C -0.088 4.088 20 C -0.125 4.125 21 C -0.128 4.128 22 C -0.135 4.135 23 C -0.131 4.131 24 C -0.135 4.135 25 H 0.275 0.725 26 H 0.397 0.603 27 H 0.028 0.972 28 H 0.027 0.973 29 H 0.084 0.916 30 H 0.120 0.880 31 H 0.079 0.921 32 H 0.090 0.910 33 H 0.134 0.866 34 H 0.140 0.860 35 H 0.139 0.861 36 H 0.134 0.866 37 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.559 -21.503 -1.266 22.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.189 4.189 3 Si 0.821 3.179 4 H -0.185 1.185 5 H -0.198 1.198 6 H -0.171 1.171 7 C -0.609 4.609 8 H 0.108 0.892 9 C 0.338 3.662 10 O -0.525 6.525 11 N -0.406 5.406 12 C 0.041 3.959 13 C -0.178 4.178 14 H 0.141 0.859 15 C -0.196 4.196 16 C -0.147 4.147 17 H 0.108 0.892 18 C -0.081 4.081 19 C -0.088 4.088 20 C -0.143 4.143 21 C -0.146 4.146 22 C -0.153 4.153 23 C -0.149 4.149 24 C -0.153 4.153 25 H 0.085 0.915 26 H 0.231 0.769 27 H 0.047 0.953 28 H 0.046 0.954 29 H 0.103 0.897 30 H 0.138 0.862 31 H 0.097 0.903 32 H 0.109 0.891 33 H 0.152 0.848 34 H 0.158 0.842 35 H 0.157 0.843 36 H 0.152 0.848 37 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 6.513 -21.450 -1.261 22.452 hybrid contribution 0.082 0.812 -0.055 0.818 sum 6.594 -20.638 -1.316 21.705 Atomic orbital electron populations 1.70197 1.09667 1.29000 1.36525 1.27048 0.95556 1.05169 0.91157 0.84968 0.78737 0.74777 0.79465 1.18529 1.19812 1.17054 1.21451 0.94815 0.89987 1.54691 0.89210 1.18689 0.86853 0.84525 0.76099 1.90547 1.16397 1.88092 1.57421 1.45784 1.09355 1.04534 1.80970 1.20425 0.93659 0.83374 0.98427 1.22467 1.00564 0.89839 1.04953 0.85889 1.23313 1.03400 1.02020 0.90900 1.22292 0.99207 0.93252 0.99902 0.89223 1.20176 0.97070 0.90064 1.00753 1.19995 0.97758 0.95951 0.95124 1.21313 1.00418 0.93732 0.98832 1.21463 0.96610 0.97800 0.98703 1.21457 0.99200 0.99942 0.94715 1.21423 0.99671 0.93925 0.99833 1.21314 0.97282 0.98105 0.98625 0.91548 0.76916 0.95324 0.95425 0.89716 0.86200 0.90292 0.89139 0.84795 0.84204 0.84312 0.84775 0.85915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.64 11.83 21.84 0.26 -51.38 16 2 C 0.03 1.44 5.50 85.31 0.47 1.91 16 3 Si 1.00 41.36 29.56 68.60 2.03 43.39 16 4 H -0.26 -10.22 7.11 99.48 0.71 -9.52 16 5 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 6 H -0.25 -9.42 7.11 99.48 0.71 -8.71 16 7 C -0.57 -33.13 9.54 24.83 0.24 -32.89 16 8 H 0.09 4.61 7.85 -2.91 -0.02 4.58 16 9 C 0.53 32.11 7.75 86.36 0.67 32.77 16 10 O -0.64 -44.40 15.02 -4.31 -0.06 -44.47 16 11 N -0.75 -35.05 5.55 -467.42 -2.59 -37.65 16 12 C 0.17 6.77 5.96 86.38 0.51 7.28 16 13 C -0.16 -4.48 5.57 -10.77 -0.06 -4.54 16 14 H 0.12 3.06 8.04 -2.38 -0.02 3.04 16 15 C -0.16 -3.70 9.83 30.62 0.30 -3.40 16 16 C -0.13 -3.03 5.44 -10.79 -0.06 -3.08 16 17 H 0.09 2.42 8.07 -2.39 -0.02 2.40 16 18 C -0.04 -0.83 5.63 29.85 0.17 -0.66 16 19 C -0.09 -1.76 5.09 -19.86 -0.10 -1.86 16 20 C -0.13 -2.24 9.70 22.27 0.22 -2.03 16 21 C -0.13 -2.08 10.05 22.27 0.22 -1.86 16 22 C -0.14 -2.21 10.05 22.27 0.22 -1.99 16 23 C -0.13 -2.36 10.05 22.27 0.22 -2.13 16 24 C -0.14 -2.75 9.70 22.27 0.22 -2.53 16 25 H 0.27 15.52 8.29 -92.71 -0.77 14.75 16 26 H 0.40 15.66 8.38 -92.71 -0.78 14.88 16 27 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.03 1.23 7.88 -2.39 -0.02 1.21 16 29 H 0.08 2.16 8.04 -2.39 -0.02 2.14 16 30 H 0.12 2.14 8.03 -2.39 -0.02 2.12 16 31 H 0.08 1.47 8.09 -2.39 -0.02 1.45 16 32 H 0.09 1.41 7.82 -2.38 -0.02 1.39 16 33 H 0.13 1.95 8.06 -2.91 -0.02 1.92 16 34 H 0.14 1.61 8.06 -2.91 -0.02 1.58 16 35 H 0.14 1.60 8.06 -2.91 -0.02 1.57 16 36 H 0.13 1.90 8.06 -2.91 -0.02 1.88 16 37 H 0.12 2.36 8.06 -2.91 -0.02 2.33 16 Total: -1.00 -78.16 322.03 3.15 -75.01 By element: Atomic # 1 Polarization: 29.82 SS G_CDS: 0.28 Total: 30.10 kcal Atomic # 6 Polarization: -18.24 SS G_CDS: 3.24 Total: -15.00 kcal Atomic # 7 Polarization: -86.69 SS G_CDS: -2.34 Total: -89.03 kcal Atomic # 8 Polarization: -44.40 SS G_CDS: -0.06 Total: -44.47 kcal Atomic # 14 Polarization: 41.36 SS G_CDS: 2.03 Total: 43.39 kcal Total: -78.16 3.15 -75.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001124126973.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.266 kcal (2) G-P(sol) polarization free energy of solvation -78.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds