Wall clock time and date at job start Sun Mar 29 2020 23:51:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 120.00421 * 2 1 4 4 H 1.48504 * 109.46817 * 0.02562 * 3 2 1 5 5 H 1.48499 * 109.46966 * 120.00007 * 3 2 1 6 6 H 1.48495 * 109.47010 * 240.00113 * 3 2 1 7 7 C 1.37882 * 119.99887 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00115 * 186.40233 * 7 2 1 9 9 C 1.50703 * 119.99660 * 6.40261 * 7 2 1 10 10 H 1.08999 * 109.47051 * 33.08026 * 9 7 2 11 11 C 1.50698 * 109.46853 * 153.07817 * 9 7 2 12 12 O 1.21283 * 120.00286 * 119.99889 * 11 9 7 13 13 N 1.34781 * 120.00193 * 299.99923 * 11 9 7 14 14 C 1.46495 * 119.99947 * 180.02562 * 13 11 9 15 15 C 1.53002 * 109.47301 * 179.97438 * 14 13 11 16 16 C 1.52997 * 117.50242 * 243.74870 * 15 14 13 17 17 C 1.52999 * 117.50308 * 175.08543 * 15 14 13 18 18 C 1.50699 * 109.46841 * 273.07397 * 9 7 2 19 19 C 1.38227 * 120.00438 * 306.42918 * 18 9 7 20 20 C 1.38243 * 120.00156 * 179.78916 * 19 18 9 21 21 C 1.38236 * 119.99760 * 0.44252 * 20 19 18 22 22 C 1.38231 * 120.00026 * 359.80819 * 21 20 19 23 23 C 1.38241 * 120.00276 * 359.97438 * 22 21 20 24 24 H 0.96991 * 120.00213 * 175.60544 * 1 2 3 25 25 H 0.96994 * 119.99831 * 359.97438 * 13 11 9 26 26 H 1.08998 * 109.47550 * 299.99848 * 14 13 11 27 27 H 1.09001 * 109.47227 * 59.99932 * 14 13 11 28 28 H 1.09001 * 115.54251 * 29.41790 * 15 14 13 29 29 H 1.08997 * 117.49831 * 359.97438 * 16 15 14 30 30 H 1.09001 * 117.49798 * 145.02004 * 16 15 14 31 31 H 1.09000 * 117.49892 * 214.98115 * 17 15 14 32 32 H 1.08996 * 117.49446 * 359.97438 * 17 15 14 33 33 H 1.08005 * 120.00127 * 359.97438 * 19 18 9 34 34 H 1.07993 * 119.99833 * 180.27661 * 20 19 18 35 35 H 1.07997 * 119.99703 * 179.83587 * 21 20 19 36 36 H 1.07996 * 120.00220 * 180.02562 * 22 21 20 37 37 H 1.07990 * 120.00228 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 1.2843 2.7465 0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0794 -1.1971 0.1038 9 6 1.2580 -2.4950 -0.1467 10 1 0.3888 -2.3452 -0.7871 11 6 2.1649 -3.5280 -0.7643 12 8 2.4195 -4.5494 -0.1620 13 7 2.6933 -3.3167 -1.9861 14 6 3.5745 -4.3211 -2.5867 15 6 4.0327 -3.8391 -3.9646 16 6 3.5999 -4.6607 -5.1805 17 6 5.0559 -4.6987 -4.7096 18 6 0.8064 -2.9701 1.2103 19 6 1.7227 -3.1018 2.2368 20 6 1.3076 -3.5334 3.4828 21 6 -0.0223 -3.8421 3.6996 22 6 -0.9378 -3.7154 2.6716 23 6 -0.5235 -3.2795 1.4269 24 1 -0.4850 -0.8375 -0.0644 25 1 2.4894 -2.5000 -2.4680 26 1 4.4437 -4.4714 -1.9464 27 1 3.0341 -5.2619 -2.6925 28 1 4.1002 -2.7579 -4.0858 29 1 2.9890 -5.5449 -4.9988 30 1 3.3830 -4.1201 -6.1019 31 1 5.7962 -4.1832 -5.3213 32 1 5.4028 -5.6075 -4.2179 33 1 2.7624 -2.8646 2.0663 34 1 2.0227 -3.6320 4.2860 35 1 -0.3461 -4.1819 4.6723 36 1 -1.9768 -3.9562 2.8411 37 1 -1.2387 -3.1801 0.6239 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001125345899.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:51:50 Heat of formation + Delta-G solvation = -3.205497 kcal Electronic energy + Delta-G solvation = -18932.158526 eV Core-core repulsion = 16060.394854 eV Total energy + Delta-G solvation = -2871.763672 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.31215 -38.05560 -37.14677 -33.95633 -33.41565 -30.85742 -30.01189 -27.94369 -25.93992 -23.61037 -22.45385 -21.63201 -20.99633 -20.71468 -19.35850 -17.30934 -16.43565 -15.85419 -15.71713 -14.86158 -14.53573 -14.15733 -13.89272 -13.85024 -13.69041 -13.02037 -12.69047 -12.47611 -12.16978 -12.03032 -11.60536 -11.55098 -11.31038 -10.97518 -10.85345 -10.52492 -10.29541 -10.20939 -10.15264 -10.10756 -8.99937 -8.80666 -8.59927 -8.37410 -8.01208 -7.64238 -6.56894 -4.32142 2.29763 2.34646 3.33887 3.35973 3.54704 3.61869 3.64910 4.03708 4.39746 4.69420 4.77334 4.87681 4.99740 5.17395 5.33207 5.54724 5.66929 5.68255 5.72050 5.81596 5.84031 5.95447 6.04146 6.09362 6.14301 6.31363 6.41643 6.47956 6.63015 6.88858 6.98557 7.15307 7.30119 7.36788 7.59773 7.83799 7.96608 8.19679 8.31202 8.61084 9.15145 9.39951 10.81992 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.014434 B = 0.007235 C = 0.005337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.377848 B = 3869.243033 C = 5245.338751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.031 3.969 3 Si 1.069 2.931 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.285 1.285 7 C -0.594 4.594 8 H 0.058 0.942 9 C 0.044 3.956 10 H 0.064 0.936 11 C 0.532 3.468 12 O -0.566 6.566 13 N -0.728 5.728 14 C 0.152 3.848 15 C -0.164 4.164 16 C -0.179 4.179 17 C -0.174 4.174 18 C -0.018 4.018 19 C -0.078 4.078 20 C -0.133 4.133 21 C -0.146 4.146 22 C -0.129 4.129 23 C -0.127 4.127 24 H 0.273 0.727 25 H 0.405 0.595 26 H 0.063 0.937 27 H 0.059 0.941 28 H 0.112 0.888 29 H 0.095 0.905 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.112 0.888 34 H 0.108 0.892 35 H 0.107 0.893 36 H 0.108 0.892 37 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.343 -5.567 -5.261 8.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.176 4.176 3 Si 0.896 3.104 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.212 1.212 7 C -0.631 4.631 8 H 0.076 0.924 9 C 0.022 3.978 10 H 0.082 0.918 11 C 0.321 3.679 12 O -0.445 6.445 13 N -0.380 5.380 14 C 0.028 3.972 15 C -0.183 4.183 16 C -0.216 4.216 17 C -0.212 4.212 18 C -0.019 4.019 19 C -0.096 4.096 20 C -0.151 4.151 21 C -0.165 4.165 22 C -0.147 4.147 23 C -0.146 4.146 24 H 0.085 0.915 25 H 0.240 0.760 26 H 0.081 0.919 27 H 0.078 0.922 28 H 0.130 0.870 29 H 0.113 0.887 30 H 0.112 0.888 31 H 0.113 0.887 32 H 0.113 0.887 33 H 0.130 0.870 34 H 0.126 0.874 35 H 0.125 0.875 36 H 0.126 0.874 37 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 4.311 -4.658 -4.776 7.943 hybrid contribution 0.124 -1.204 -0.241 1.234 sum 4.435 -5.862 -5.017 8.900 Atomic orbital electron populations 1.70789 1.06824 1.31405 1.43668 1.25875 0.96366 1.02577 0.92817 0.83527 0.74958 0.75103 0.76777 1.20639 1.21280 1.21166 1.21545 0.94733 0.89441 1.57411 0.92413 1.18154 0.95619 0.93505 0.90494 0.91819 1.21301 0.79954 0.86838 0.79786 1.90586 1.62349 1.29465 1.62094 1.45889 1.50101 1.22639 1.19378 1.20721 0.93852 0.91724 0.90889 1.22514 1.04325 0.98701 0.92718 1.23071 0.97606 1.02565 0.98314 1.22937 0.92504 1.02133 1.03624 1.20103 0.92515 0.92342 0.96985 1.20790 0.99463 0.97275 0.92105 1.20982 0.95643 1.01394 0.97051 1.20818 0.93791 1.03534 0.98316 1.20878 0.98501 1.01588 0.93720 1.20962 0.95908 1.00793 0.96891 0.91511 0.75975 0.91872 0.92237 0.87029 0.88697 0.88784 0.88678 0.88659 0.87021 0.87417 0.87524 0.87414 0.87350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.81 13.63 55.43 0.76 -24.05 16 2 C 0.03 0.80 5.45 -17.82 -0.10 0.71 16 3 Si 1.07 23.43 29.91 -169.99 -5.08 18.34 16 4 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.29 -6.18 7.11 56.52 0.40 -5.78 16 6 H -0.29 -5.86 7.11 56.52 0.40 -5.46 16 7 C -0.59 -15.10 7.45 -34.44 -0.26 -15.36 16 8 H 0.06 1.49 7.82 -52.49 -0.41 1.08 16 9 C 0.04 1.04 1.94 -94.08 -0.18 0.86 16 10 H 0.06 1.57 6.63 -51.93 -0.34 1.22 16 11 C 0.53 12.03 7.04 -10.98 -0.08 11.95 16 12 O -0.57 -14.07 15.43 5.56 0.09 -13.99 16 13 N -0.73 -13.56 5.46 -60.30 -0.33 -13.88 16 14 C 0.15 2.38 5.96 -4.04 -0.02 2.36 16 15 C -0.16 -2.01 5.84 -90.62 -0.53 -2.54 16 16 C -0.18 -1.88 10.18 -26.69 -0.27 -2.15 16 17 C -0.17 -1.77 10.26 -26.69 -0.27 -2.05 16 18 C -0.02 -0.44 4.17 -104.62 -0.44 -0.88 16 19 C -0.08 -1.82 8.33 -39.58 -0.33 -2.15 16 20 C -0.13 -2.69 10.05 -39.58 -0.40 -3.09 16 21 C -0.15 -2.79 10.05 -39.58 -0.40 -3.18 16 22 C -0.13 -2.53 10.05 -39.58 -0.40 -2.93 16 23 C -0.13 -2.81 9.50 -39.58 -0.38 -3.19 16 24 H 0.27 7.52 6.49 -40.82 -0.26 7.26 16 25 H 0.41 7.13 8.29 -40.82 -0.34 6.79 16 26 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.06 0.95 7.87 -51.93 -0.41 0.54 16 28 H 0.11 1.35 8.04 -51.93 -0.42 0.93 16 29 H 0.09 1.00 8.03 -51.93 -0.42 0.58 16 30 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.11 2.65 7.88 -52.48 -0.41 2.24 16 34 H 0.11 1.87 8.06 -52.49 -0.42 1.45 16 35 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 36 H 0.11 1.78 8.06 -52.49 -0.42 1.36 16 37 H 0.11 2.26 7.96 -52.49 -0.42 1.84 16 LS Contribution 317.75 15.07 4.79 4.79 Total: -1.00 -29.96 317.75 -9.02 -38.98 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: -5.19 Total: 11.45 kcal Atomic # 6 Polarization: -17.60 SS G_CDS: -4.05 Total: -21.64 kcal Atomic # 7 Polarization: -38.36 SS G_CDS: 0.43 Total: -37.94 kcal Atomic # 8 Polarization: -14.07 SS G_CDS: 0.09 Total: -13.99 kcal Atomic # 14 Polarization: 23.43 SS G_CDS: -5.08 Total: 18.34 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -29.96 -9.02 -38.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001125345899.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.778 kcal (2) G-P(sol) polarization free energy of solvation -29.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds