Wall clock time and date at job start Sun Mar 29 2020 23:51:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 120.00421 * 2 1 4 4 H 1.48504 * 109.46817 * 0.02562 * 3 2 1 5 5 H 1.48499 * 109.46966 * 120.00007 * 3 2 1 6 6 H 1.48495 * 109.47010 * 240.00113 * 3 2 1 7 7 C 1.37882 * 119.99887 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00115 * 186.40233 * 7 2 1 9 9 C 1.50703 * 119.99660 * 6.40261 * 7 2 1 10 10 H 1.08999 * 109.47051 * 33.08026 * 9 7 2 11 11 C 1.50698 * 109.46853 * 153.07817 * 9 7 2 12 12 O 1.21283 * 120.00286 * 119.99889 * 11 9 7 13 13 N 1.34781 * 120.00193 * 299.99923 * 11 9 7 14 14 C 1.46495 * 119.99947 * 180.02562 * 13 11 9 15 15 C 1.53002 * 109.47301 * 179.97438 * 14 13 11 16 16 C 1.52997 * 117.50242 * 243.74870 * 15 14 13 17 17 C 1.52999 * 117.50308 * 175.08543 * 15 14 13 18 18 C 1.50699 * 109.46841 * 273.07397 * 9 7 2 19 19 C 1.38227 * 120.00438 * 306.42918 * 18 9 7 20 20 C 1.38243 * 120.00156 * 179.78916 * 19 18 9 21 21 C 1.38236 * 119.99760 * 0.44252 * 20 19 18 22 22 C 1.38231 * 120.00026 * 359.80819 * 21 20 19 23 23 C 1.38241 * 120.00276 * 359.97438 * 22 21 20 24 24 H 0.96991 * 120.00213 * 175.60544 * 1 2 3 25 25 H 0.96994 * 119.99831 * 359.97438 * 13 11 9 26 26 H 1.08998 * 109.47550 * 299.99848 * 14 13 11 27 27 H 1.09001 * 109.47227 * 59.99932 * 14 13 11 28 28 H 1.09001 * 115.54251 * 29.41790 * 15 14 13 29 29 H 1.08997 * 117.49831 * 359.97438 * 16 15 14 30 30 H 1.09001 * 117.49798 * 145.02004 * 16 15 14 31 31 H 1.09000 * 117.49892 * 214.98115 * 17 15 14 32 32 H 1.08996 * 117.49446 * 359.97438 * 17 15 14 33 33 H 1.08005 * 120.00127 * 359.97438 * 19 18 9 34 34 H 1.07993 * 119.99833 * 180.27661 * 20 19 18 35 35 H 1.07997 * 119.99703 * 179.83587 * 21 20 19 36 36 H 1.07996 * 120.00220 * 180.02562 * 22 21 20 37 37 H 1.07990 * 120.00228 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 1.2843 2.7465 0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0794 -1.1971 0.1038 9 6 1.2580 -2.4950 -0.1467 10 1 0.3888 -2.3452 -0.7871 11 6 2.1649 -3.5280 -0.7643 12 8 2.4195 -4.5494 -0.1620 13 7 2.6933 -3.3167 -1.9861 14 6 3.5745 -4.3211 -2.5867 15 6 4.0327 -3.8391 -3.9646 16 6 3.5999 -4.6607 -5.1805 17 6 5.0559 -4.6987 -4.7096 18 6 0.8064 -2.9701 1.2103 19 6 1.7227 -3.1018 2.2368 20 6 1.3076 -3.5334 3.4828 21 6 -0.0223 -3.8421 3.6996 22 6 -0.9378 -3.7154 2.6716 23 6 -0.5235 -3.2795 1.4269 24 1 -0.4850 -0.8375 -0.0644 25 1 2.4894 -2.5000 -2.4680 26 1 4.4437 -4.4714 -1.9464 27 1 3.0341 -5.2619 -2.6925 28 1 4.1002 -2.7579 -4.0858 29 1 2.9890 -5.5449 -4.9988 30 1 3.3830 -4.1201 -6.1019 31 1 5.7962 -4.1832 -5.3213 32 1 5.4028 -5.6075 -4.2179 33 1 2.7624 -2.8646 2.0663 34 1 2.0227 -3.6320 4.2860 35 1 -0.3461 -4.1819 4.6723 36 1 -1.9768 -3.9562 2.8411 37 1 -1.2387 -3.1801 0.6239 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001125345899.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:51:50 Heat of formation + Delta-G solvation = -19.927732 kcal Electronic energy + Delta-G solvation = -18932.883656 eV Core-core repulsion = 16060.394854 eV Total energy + Delta-G solvation = -2872.488802 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.02921 -39.56500 -38.34018 -35.87467 -34.94747 -32.68079 -31.64933 -29.56433 -27.47768 -25.51946 -23.29933 -23.26370 -22.56726 -21.93397 -21.03784 -19.17662 -17.89945 -17.51915 -17.18881 -16.47681 -16.05767 -15.64234 -15.59198 -15.34459 -14.95044 -14.66139 -14.33355 -14.09804 -13.84856 -13.77432 -13.23253 -12.86148 -12.58781 -12.41582 -12.36893 -11.97040 -11.92113 -11.81080 -11.42891 -11.13381 -10.92774 -10.63308 -10.53404 -9.95433 -9.66484 -9.35488 -8.63812 -6.39300 0.64323 0.70102 1.56204 1.62019 1.81343 1.82464 2.37304 2.57497 2.89491 3.08491 3.20836 3.69360 3.95221 4.06087 4.09480 4.20441 4.24879 4.29346 4.35707 4.38052 4.63579 4.69416 4.71653 4.77570 4.82771 4.89471 4.99821 5.19013 5.24592 5.24938 5.31148 5.59076 5.68094 5.71701 5.73837 6.04068 6.13984 6.30083 6.52538 6.67120 7.38358 7.41478 8.75196 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.014434 B = 0.007235 C = 0.005337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.377848 B = 3869.243033 C = 5245.338751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.010 4.010 3 Si 1.110 2.890 4 H -0.286 1.286 5 H -0.281 1.281 6 H -0.261 1.261 7 C -0.590 4.590 8 H 0.048 0.952 9 C 0.043 3.957 10 H 0.048 0.952 11 C 0.528 3.472 12 O -0.593 6.593 13 N -0.716 5.716 14 C 0.153 3.847 15 C -0.181 4.181 16 C -0.172 4.172 17 C -0.159 4.159 18 C -0.047 4.047 19 C -0.108 4.108 20 C -0.134 4.134 21 C -0.141 4.141 22 C -0.127 4.127 23 C -0.150 4.150 24 H 0.264 0.736 25 H 0.410 0.590 26 H 0.053 0.947 27 H 0.055 0.945 28 H 0.114 0.886 29 H 0.093 0.907 30 H 0.110 0.890 31 H 0.114 0.886 32 H 0.098 0.902 33 H 0.092 0.908 34 H 0.138 0.862 35 H 0.151 0.849 36 H 0.143 0.857 37 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.792 -5.807 -5.195 9.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.212 4.212 3 Si 0.932 3.068 4 H -0.211 1.211 5 H -0.207 1.207 6 H -0.186 1.186 7 C -0.628 4.628 8 H 0.066 0.934 9 C 0.022 3.978 10 H 0.066 0.934 11 C 0.317 3.683 12 O -0.475 6.475 13 N -0.367 5.367 14 C 0.030 3.970 15 C -0.200 4.200 16 C -0.209 4.209 17 C -0.196 4.196 18 C -0.048 4.048 19 C -0.126 4.126 20 C -0.152 4.152 21 C -0.158 4.158 22 C -0.144 4.144 23 C -0.168 4.168 24 H 0.075 0.925 25 H 0.246 0.754 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.132 0.868 29 H 0.112 0.888 30 H 0.128 0.872 31 H 0.132 0.868 32 H 0.117 0.883 33 H 0.111 0.889 34 H 0.155 0.845 35 H 0.168 0.832 36 H 0.161 0.839 37 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 4.779 -4.911 -4.751 8.339 hybrid contribution -0.027 -1.229 -0.234 1.252 sum 4.753 -6.140 -4.986 9.228 Atomic orbital electron populations 1.70881 1.07676 1.30903 1.45987 1.27077 0.96391 1.05616 0.92085 0.83006 0.74213 0.71627 0.77923 1.21116 1.20717 1.18613 1.21622 0.94208 0.90338 1.56605 0.93414 1.18093 0.95162 0.93535 0.91028 0.93379 1.21131 0.80089 0.86251 0.80815 1.90550 1.63458 1.30323 1.63135 1.45851 1.49407 1.23287 1.18132 1.20833 0.92663 0.90885 0.92614 1.22379 1.07065 0.99216 0.91328 1.23163 0.97980 1.01985 0.97725 1.23059 0.92612 1.01536 1.02421 1.20181 0.93682 0.94072 0.96873 1.20821 0.98581 0.99510 0.93720 1.21360 0.97244 1.00055 0.96500 1.21319 0.92858 1.01754 0.99918 1.21324 1.00561 0.99894 0.92656 1.21164 0.95316 1.01876 0.98477 0.92535 0.75411 0.92915 0.92641 0.86751 0.88835 0.87208 0.86771 0.88306 0.88937 0.84462 0.83176 0.83894 0.87333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.18 13.63 21.45 0.29 -51.89 16 2 C -0.01 -0.54 5.45 84.66 0.46 -0.08 16 3 Si 1.11 47.19 29.91 68.60 2.05 49.24 16 4 H -0.29 -12.30 7.11 99.48 0.71 -11.59 16 5 H -0.28 -11.63 7.11 99.48 0.71 -10.93 16 6 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 7 C -0.59 -30.88 7.45 25.60 0.19 -30.69 16 8 H 0.05 2.54 7.82 -2.91 -0.02 2.52 16 9 C 0.04 2.16 1.94 -13.03 -0.03 2.13 16 10 H 0.05 2.51 6.63 -2.39 -0.02 2.49 16 11 C 0.53 24.80 7.04 87.66 0.62 25.42 16 12 O -0.59 -30.54 15.43 -3.04 -0.05 -30.59 16 13 N -0.72 -27.34 5.46 -463.06 -2.53 -29.87 16 14 C 0.15 4.84 5.96 86.38 0.51 5.35 16 15 C -0.18 -4.25 5.84 -10.79 -0.06 -4.32 16 16 C -0.17 -3.28 10.18 30.62 0.31 -2.97 16 17 C -0.16 -2.87 10.26 30.62 0.31 -2.56 16 18 C -0.05 -2.32 4.17 -19.87 -0.08 -2.40 16 19 C -0.11 -5.13 8.33 22.27 0.19 -4.94 16 20 C -0.13 -5.25 10.05 22.27 0.22 -5.03 16 21 C -0.14 -4.95 10.05 22.27 0.22 -4.73 16 22 C -0.13 -4.74 10.05 22.27 0.22 -4.52 16 23 C -0.15 -6.71 9.50 22.27 0.21 -6.50 16 24 H 0.26 15.07 6.49 -92.71 -0.60 14.47 16 25 H 0.41 14.74 8.29 -92.71 -0.77 13.98 16 26 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 27 H 0.06 1.79 7.87 -2.39 -0.02 1.77 16 28 H 0.11 2.63 8.04 -2.39 -0.02 2.61 16 29 H 0.09 1.82 8.03 -2.39 -0.02 1.80 16 30 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.09 4.59 7.88 -2.91 -0.02 4.57 16 34 H 0.14 4.44 8.06 -2.91 -0.02 4.42 16 35 H 0.15 3.97 8.06 -2.91 -0.02 3.95 16 36 H 0.14 4.26 8.06 -2.91 -0.02 4.24 16 37 H 0.11 4.67 7.96 -2.92 -0.02 4.65 16 Total: -1.00 -65.96 317.75 3.54 -62.42 By element: Atomic # 1 Polarization: 36.04 SS G_CDS: 0.46 Total: 36.50 kcal Atomic # 6 Polarization: -39.12 SS G_CDS: 3.31 Total: -35.82 kcal Atomic # 7 Polarization: -79.53 SS G_CDS: -2.23 Total: -81.76 kcal Atomic # 8 Polarization: -30.54 SS G_CDS: -0.05 Total: -30.59 kcal Atomic # 14 Polarization: 47.19 SS G_CDS: 2.05 Total: 49.24 kcal Total: -65.96 3.54 -62.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001125345899.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.494 kcal (2) G-P(sol) polarization free energy of solvation -65.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds