Wall clock time and date at job start Sun Mar 29 2020 23:51:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00024 * 2 1 4 4 H 1.48499 * 109.47352 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47313 * 299.99988 * 3 2 1 6 6 H 1.48502 * 109.47065 * 59.99897 * 3 2 1 7 7 C 1.37875 * 119.99843 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00009 * 186.39127 * 7 2 1 9 9 C 1.50698 * 120.00486 * 6.39555 * 7 2 1 10 10 H 1.09009 * 109.46957 * 333.94124 * 9 7 2 11 11 C 1.50694 * 109.47399 * 213.94008 * 9 7 2 12 12 O 1.21284 * 120.00060 * 239.99485 * 11 9 7 13 13 N 1.34775 * 120.00132 * 59.99642 * 11 9 7 14 14 C 1.46502 * 120.00119 * 179.97438 * 13 11 9 15 15 C 1.52999 * 109.47358 * 180.02562 * 14 13 11 16 16 C 1.53001 * 117.49767 * 243.75188 * 15 14 13 17 17 C 1.52996 * 117.50166 * 175.09164 * 15 14 13 18 18 C 1.50704 * 109.47272 * 93.93533 * 9 7 2 19 19 C 1.38236 * 119.99713 * 53.85195 * 18 9 7 20 20 C 1.38238 * 119.99482 * 179.78774 * 19 18 9 21 21 C 1.38224 * 120.00112 * 0.44123 * 20 19 18 22 22 C 1.38239 * 120.00276 * 359.81244 * 21 20 19 23 23 C 1.38225 * 119.99973 * 359.97438 * 22 21 20 24 24 H 0.97000 * 120.00232 * 0.02562 * 1 2 3 25 25 H 0.96999 * 120.00121 * 0.27895 * 13 11 9 26 26 H 1.09000 * 109.47139 * 300.00374 * 14 13 11 27 27 H 1.08997 * 109.46897 * 60.00168 * 14 13 11 28 28 H 1.08999 * 115.54760 * 29.41816 * 15 14 13 29 29 H 1.08998 * 117.49917 * 359.97438 * 16 15 14 30 30 H 1.09003 * 117.49805 * 145.02096 * 16 15 14 31 31 H 1.09001 * 117.49704 * 214.98222 * 17 15 14 32 32 H 1.09004 * 117.50015 * 359.97438 * 17 15 14 33 33 H 1.07995 * 119.99687 * 359.97438 * 19 18 9 34 34 H 1.08005 * 119.99567 * 180.27361 * 20 19 18 35 35 H 1.08002 * 119.99985 * 179.83660 * 21 20 19 36 36 H 1.08002 * 119.99994 * 180.02562 * 22 21 20 37 37 H 1.07999 * 120.00556 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0795 -1.1969 0.1047 9 6 1.2581 -2.4952 -0.1443 10 1 0.2375 -2.3708 0.2179 11 6 1.9504 -3.5638 0.6617 12 8 2.3790 -4.5562 0.1117 13 7 2.0933 -3.4169 1.9938 14 6 2.7658 -4.4561 2.7774 15 6 2.7936 -4.0459 4.2511 16 6 4.1622 -3.8067 4.8921 17 6 3.3543 -5.0552 5.2550 18 6 1.2302 -2.8995 -1.5958 19 6 2.4101 -2.9925 -2.3101 20 6 2.3848 -3.3677 -3.6403 21 6 1.1791 -3.6409 -4.2586 22 6 -0.0012 -3.5428 -3.5457 23 6 0.0244 -3.1720 -2.2144 24 1 -0.4850 0.8400 -0.0004 25 1 1.7469 -2.6252 2.4343 26 1 2.2255 -5.3970 2.6727 27 1 3.7862 -4.5809 2.4153 28 1 1.9671 -3.4157 4.5793 29 1 5.0426 -3.9420 4.2640 30 1 4.2358 -3.0194 5.6423 31 1 2.8968 -5.0888 6.2437 32 1 3.7030 -6.0118 4.8656 33 1 3.3517 -2.7751 -1.8280 34 1 3.3070 -3.4447 -4.1973 35 1 1.1592 -3.9315 -5.2986 36 1 -0.9432 -3.7567 -4.0287 37 1 -0.8977 -3.0949 -1.6574 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001125345900.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:51:53 Heat of formation + Delta-G solvation = -0.794646 kcal Electronic energy + Delta-G solvation = -18882.398504 eV Core-core repulsion = 16010.739374 eV Total energy + Delta-G solvation = -2871.659129 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.16130 -37.95849 -37.05853 -33.63362 -33.28097 -31.07216 -29.92521 -27.92519 -26.07718 -23.73063 -22.38489 -21.58725 -20.90850 -20.62218 -19.08768 -16.74892 -16.36989 -15.82105 -15.75403 -14.73623 -14.52599 -14.24565 -13.99057 -13.79354 -13.61838 -12.75434 -12.59572 -12.34911 -12.26306 -11.65023 -11.55658 -11.44493 -11.23875 -11.07481 -10.98821 -10.47419 -10.37525 -10.25607 -10.06361 -9.96016 -9.42253 -8.77228 -8.56317 -8.25627 -7.93467 -7.60128 -6.27607 -4.32193 2.38664 2.41656 3.18865 3.28212 3.31804 3.68161 3.81013 4.12973 4.29809 4.76893 4.84257 4.94636 5.05585 5.11563 5.40702 5.60716 5.73166 5.76534 5.81231 5.89412 5.91174 6.01886 6.10997 6.21301 6.26547 6.42677 6.51961 6.61654 6.88804 6.99003 7.18936 7.28949 7.38069 7.46148 7.63993 7.77424 7.97128 8.09074 8.44169 8.72560 9.27883 9.34486 10.81141 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.014337 B = 0.007303 C = 0.005383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1952.481061 B = 3833.290577 C = 5200.461479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.074 3.926 3 Si 0.897 3.103 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.513 4.513 8 H 0.063 0.937 9 C 0.048 3.952 10 H 0.092 0.908 11 C 0.527 3.473 12 O -0.571 6.571 13 N -0.728 5.728 14 C 0.152 3.848 15 C -0.163 4.163 16 C -0.177 4.177 17 C -0.176 4.176 18 C -0.011 4.011 19 C -0.085 4.085 20 C -0.134 4.134 21 C -0.149 4.149 22 C -0.132 4.132 23 C -0.120 4.120 24 H 0.266 0.734 25 H 0.406 0.594 26 H 0.061 0.939 27 H 0.060 0.940 28 H 0.110 0.890 29 H 0.095 0.905 30 H 0.093 0.907 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.111 0.889 34 H 0.106 0.894 35 H 0.105 0.895 36 H 0.106 0.894 37 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.721 -5.091 4.832 7.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.130 4.130 3 Si 0.724 3.276 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.550 4.550 8 H 0.081 0.919 9 C 0.027 3.973 10 H 0.110 0.890 11 C 0.317 3.683 12 O -0.450 6.450 13 N -0.380 5.380 14 C 0.028 3.972 15 C -0.181 4.181 16 C -0.214 4.214 17 C -0.214 4.214 18 C -0.012 4.012 19 C -0.103 4.103 20 C -0.153 4.153 21 C -0.167 4.167 22 C -0.150 4.150 23 C -0.138 4.138 24 H 0.076 0.924 25 H 0.241 0.759 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.128 0.872 29 H 0.114 0.886 30 H 0.112 0.888 31 H 0.112 0.888 32 H 0.113 0.887 33 H 0.129 0.871 34 H 0.124 0.876 35 H 0.123 0.877 36 H 0.125 0.875 37 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 2.867 -5.676 4.446 7.759 hybrid contribution 0.253 1.429 0.177 1.462 sum 3.120 -4.246 4.623 7.009 Atomic orbital electron populations 1.69890 1.06008 1.27327 1.48355 1.24958 0.94892 0.99462 0.93727 0.86451 0.80298 0.83067 0.77795 1.19486 1.20700 1.20816 1.20716 0.93503 0.88634 1.52183 0.91925 1.18142 0.99810 0.91823 0.87555 0.89038 1.21608 0.78027 0.87097 0.81608 1.90576 1.51176 1.32208 1.71035 1.45901 1.60641 1.23358 1.08113 1.20709 0.97630 0.91546 0.87329 1.22502 0.98076 1.03642 0.93895 1.23061 0.95065 0.99699 1.03608 1.22940 1.04362 0.94471 0.99599 1.20068 0.92110 0.91872 0.97194 1.20834 0.98346 0.97864 0.93243 1.20957 0.97046 1.01847 0.95410 1.20796 0.93056 1.03988 0.98875 1.20900 0.97225 1.02023 0.94860 1.21001 0.97819 1.00323 0.94697 0.92393 0.75888 0.92057 0.92214 0.87167 0.88646 0.88828 0.88785 0.88700 0.87100 0.87587 0.87709 0.87548 0.86981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.21 12.78 55.43 0.71 -22.50 16 2 C 0.07 1.89 5.45 -17.82 -0.10 1.79 16 3 Si 0.90 20.08 29.54 -169.99 -5.02 15.06 16 4 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16 5 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 6 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.51 -12.91 7.46 -34.44 -0.26 -13.17 16 8 H 0.06 1.61 7.82 -52.49 -0.41 1.19 16 9 C 0.05 1.15 2.44 -94.08 -0.23 0.92 16 10 H 0.09 2.32 7.00 -51.92 -0.36 1.96 16 11 C 0.53 11.96 7.04 -10.99 -0.08 11.88 16 12 O -0.57 -14.19 15.42 5.55 0.09 -14.10 16 13 N -0.73 -13.73 5.45 -60.30 -0.33 -14.06 16 14 C 0.15 2.41 5.96 -4.04 -0.02 2.39 16 15 C -0.16 -2.04 5.85 -90.62 -0.53 -2.57 16 16 C -0.18 -1.98 10.18 -26.69 -0.27 -2.25 16 17 C -0.18 -1.83 10.25 -26.70 -0.27 -2.10 16 18 C -0.01 -0.27 4.30 -104.62 -0.45 -0.72 16 19 C -0.08 -1.94 8.31 -39.58 -0.33 -2.27 16 20 C -0.13 -2.69 10.05 -39.59 -0.40 -3.09 16 21 C -0.15 -2.81 10.05 -39.59 -0.40 -3.20 16 22 C -0.13 -2.58 10.05 -39.59 -0.40 -2.98 16 23 C -0.12 -2.66 9.67 -39.59 -0.38 -3.04 16 24 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 25 H 0.41 7.32 8.29 -40.82 -0.34 6.98 16 26 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 27 H 0.06 0.99 7.88 -51.93 -0.41 0.58 16 28 H 0.11 1.34 8.04 -51.93 -0.42 0.92 16 29 H 0.10 1.08 8.03 -51.93 -0.42 0.66 16 30 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.11 2.57 7.89 -52.49 -0.41 2.15 16 34 H 0.11 1.81 8.06 -52.48 -0.42 1.39 16 35 H 0.10 1.63 8.06 -52.49 -0.42 1.21 16 36 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 37 H 0.11 2.39 7.95 -52.49 -0.42 1.97 16 LS Contribution 319.53 15.07 4.82 4.82 Total: -1.00 -28.75 319.53 -9.14 -37.89 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: -5.28 Total: 11.32 kcal Atomic # 6 Polarization: -14.30 SS G_CDS: -4.12 Total: -18.41 kcal Atomic # 7 Polarization: -36.94 SS G_CDS: 0.38 Total: -36.56 kcal Atomic # 8 Polarization: -14.19 SS G_CDS: 0.09 Total: -14.10 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -28.75 -9.14 -37.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001125345900.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.094 kcal (2) G-P(sol) polarization free energy of solvation -28.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds