Wall clock time and date at job start Sun Mar 29 2020 23:51:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00024 * 2 1 4 4 H 1.48499 * 109.47352 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47313 * 299.99988 * 3 2 1 6 6 H 1.48502 * 109.47065 * 59.99897 * 3 2 1 7 7 C 1.37875 * 119.99843 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00009 * 186.39127 * 7 2 1 9 9 C 1.50698 * 120.00486 * 6.39555 * 7 2 1 10 10 H 1.09009 * 109.46957 * 333.94124 * 9 7 2 11 11 C 1.50694 * 109.47399 * 213.94008 * 9 7 2 12 12 O 1.21284 * 120.00060 * 239.99485 * 11 9 7 13 13 N 1.34775 * 120.00132 * 59.99642 * 11 9 7 14 14 C 1.46502 * 120.00119 * 179.97438 * 13 11 9 15 15 C 1.52999 * 109.47358 * 180.02562 * 14 13 11 16 16 C 1.53001 * 117.49767 * 243.75188 * 15 14 13 17 17 C 1.52996 * 117.50166 * 175.09164 * 15 14 13 18 18 C 1.50704 * 109.47272 * 93.93533 * 9 7 2 19 19 C 1.38236 * 119.99713 * 53.85195 * 18 9 7 20 20 C 1.38238 * 119.99482 * 179.78774 * 19 18 9 21 21 C 1.38224 * 120.00112 * 0.44123 * 20 19 18 22 22 C 1.38239 * 120.00276 * 359.81244 * 21 20 19 23 23 C 1.38225 * 119.99973 * 359.97438 * 22 21 20 24 24 H 0.97000 * 120.00232 * 0.02562 * 1 2 3 25 25 H 0.96999 * 120.00121 * 0.27895 * 13 11 9 26 26 H 1.09000 * 109.47139 * 300.00374 * 14 13 11 27 27 H 1.08997 * 109.46897 * 60.00168 * 14 13 11 28 28 H 1.08999 * 115.54760 * 29.41816 * 15 14 13 29 29 H 1.08998 * 117.49917 * 359.97438 * 16 15 14 30 30 H 1.09003 * 117.49805 * 145.02096 * 16 15 14 31 31 H 1.09001 * 117.49704 * 214.98222 * 17 15 14 32 32 H 1.09004 * 117.50015 * 359.97438 * 17 15 14 33 33 H 1.07995 * 119.99687 * 359.97438 * 19 18 9 34 34 H 1.08005 * 119.99567 * 180.27361 * 20 19 18 35 35 H 1.08002 * 119.99985 * 179.83660 * 21 20 19 36 36 H 1.08002 * 119.99994 * 180.02562 * 22 21 20 37 37 H 1.07999 * 120.00556 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0795 -1.1969 0.1047 9 6 1.2581 -2.4952 -0.1443 10 1 0.2375 -2.3708 0.2179 11 6 1.9504 -3.5638 0.6617 12 8 2.3790 -4.5562 0.1117 13 7 2.0933 -3.4169 1.9938 14 6 2.7658 -4.4561 2.7774 15 6 2.7936 -4.0459 4.2511 16 6 4.1622 -3.8067 4.8921 17 6 3.3543 -5.0552 5.2550 18 6 1.2302 -2.8995 -1.5958 19 6 2.4101 -2.9925 -2.3101 20 6 2.3848 -3.3677 -3.6403 21 6 1.1791 -3.6409 -4.2586 22 6 -0.0012 -3.5428 -3.5457 23 6 0.0244 -3.1720 -2.2144 24 1 -0.4850 0.8400 -0.0004 25 1 1.7469 -2.6252 2.4343 26 1 2.2255 -5.3970 2.6727 27 1 3.7862 -4.5809 2.4153 28 1 1.9671 -3.4157 4.5793 29 1 5.0426 -3.9420 4.2640 30 1 4.2358 -3.0194 5.6423 31 1 2.8968 -5.0888 6.2437 32 1 3.7030 -6.0118 4.8656 33 1 3.3517 -2.7751 -1.8280 34 1 3.3070 -3.4447 -4.1973 35 1 1.1592 -3.9315 -5.2986 36 1 -0.9432 -3.7567 -4.0287 37 1 -0.8977 -3.0949 -1.6574 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001125345900.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:51:52 Heat of formation + Delta-G solvation = -16.327268 kcal Electronic energy + Delta-G solvation = -18883.072049 eV Core-core repulsion = 16010.739374 eV Total energy + Delta-G solvation = -2872.332675 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.87061 -39.45693 -38.27966 -35.52740 -34.82921 -32.88422 -31.54576 -29.56240 -27.62336 -25.56533 -23.24447 -23.21910 -22.45875 -21.86530 -20.74764 -18.66358 -17.83561 -17.59116 -17.13229 -16.39643 -16.11886 -15.80671 -15.57659 -15.16569 -14.93305 -14.40991 -14.18165 -13.96906 -13.93177 -13.31228 -13.29597 -12.87277 -12.78032 -12.38180 -12.32848 -12.19697 -11.96785 -11.68510 -11.36765 -11.27807 -11.08180 -10.71329 -10.40385 -9.85151 -9.56893 -9.27543 -8.22927 -6.32944 0.74459 0.79235 1.40062 1.44056 1.53917 1.94241 2.41900 2.48833 2.93881 3.07093 3.26639 3.74270 3.99230 4.10289 4.21738 4.29477 4.31365 4.39332 4.46897 4.53481 4.73996 4.77685 4.80990 4.88061 4.96345 5.02667 5.12243 5.23545 5.27410 5.36239 5.44256 5.63689 5.70335 5.77666 5.82636 5.94448 6.22881 6.39809 6.70935 6.80076 7.33502 7.54301 8.85755 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.014337 B = 0.007303 C = 0.005383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1952.481061 B = 3833.290577 C = 5200.461479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.035 3.965 3 Si 0.954 3.046 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.515 4.515 8 H 0.051 0.949 9 C 0.050 3.950 10 H 0.070 0.930 11 C 0.524 3.476 12 O -0.597 6.597 13 N -0.717 5.717 14 C 0.153 3.847 15 C -0.179 4.179 16 C -0.176 4.176 17 C -0.157 4.157 18 C -0.042 4.042 19 C -0.111 4.111 20 C -0.135 4.135 21 C -0.143 4.143 22 C -0.129 4.129 23 C -0.144 4.144 24 H 0.268 0.732 25 H 0.410 0.590 26 H 0.057 0.943 27 H 0.050 0.950 28 H 0.115 0.885 29 H 0.091 0.909 30 H 0.108 0.892 31 H 0.115 0.885 32 H 0.099 0.901 33 H 0.094 0.906 34 H 0.136 0.864 35 H 0.148 0.852 36 H 0.141 0.859 37 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.143 -5.226 4.555 7.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.167 4.167 3 Si 0.779 3.221 4 H -0.195 1.195 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.553 4.553 8 H 0.070 0.930 9 C 0.029 3.971 10 H 0.087 0.913 11 C 0.313 3.687 12 O -0.479 6.479 13 N -0.368 5.368 14 C 0.030 3.970 15 C -0.198 4.198 16 C -0.213 4.213 17 C -0.194 4.194 18 C -0.043 4.043 19 C -0.129 4.129 20 C -0.152 4.152 21 C -0.160 4.160 22 C -0.147 4.147 23 C -0.162 4.162 24 H 0.077 0.923 25 H 0.245 0.755 26 H 0.075 0.925 27 H 0.069 0.931 28 H 0.133 0.867 29 H 0.109 0.891 30 H 0.126 0.874 31 H 0.133 0.867 32 H 0.117 0.883 33 H 0.112 0.888 34 H 0.154 0.846 35 H 0.166 0.834 36 H 0.159 0.841 37 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 3.294 -5.809 4.208 7.893 hybrid contribution 0.120 1.396 0.232 1.420 sum 3.414 -4.412 4.440 7.130 Atomic orbital electron populations 1.69982 1.07052 1.27973 1.49272 1.25577 0.95550 1.02038 0.93518 0.85571 0.79056 0.79639 0.77835 1.19461 1.21000 1.19736 1.20748 0.92911 0.89531 1.52093 0.93047 1.18029 0.98435 0.92000 0.88636 0.91251 1.21443 0.77990 0.86511 0.82763 1.90539 1.52484 1.32999 1.71851 1.45866 1.59733 1.24009 1.07189 1.20817 0.96472 0.90534 0.89201 1.22383 0.99491 1.05894 0.92003 1.23148 0.93903 1.00760 1.03481 1.23056 1.02707 0.94099 0.99544 1.20164 0.93318 0.93706 0.97071 1.20858 0.97334 0.99860 0.94877 1.21335 0.99166 1.00425 0.94323 1.21287 0.91969 1.02067 1.00719 1.21313 0.99320 1.00309 0.93708 1.21155 0.97099 1.01662 0.96319 0.92289 0.75459 0.92488 0.93147 0.86689 0.89095 0.87402 0.86708 0.88253 0.88753 0.84580 0.83402 0.84112 0.87446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.73 12.78 21.45 0.27 -48.46 16 2 C 0.04 1.81 5.45 84.65 0.46 2.27 16 3 Si 0.95 41.45 29.54 68.60 2.03 43.48 16 4 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 5 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 6 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 7 C -0.52 -26.76 7.46 25.60 0.19 -26.56 16 8 H 0.05 2.73 7.82 -2.91 -0.02 2.70 16 9 C 0.05 2.52 2.44 -13.03 -0.03 2.49 16 10 H 0.07 3.73 7.00 -2.38 -0.02 3.71 16 11 C 0.52 24.75 7.04 87.66 0.62 25.36 16 12 O -0.60 -30.77 15.42 -3.04 -0.05 -30.81 16 13 N -0.72 -27.92 5.45 -463.07 -2.53 -30.44 16 14 C 0.15 4.93 5.96 86.38 0.51 5.44 16 15 C -0.18 -4.33 5.85 -10.79 -0.06 -4.40 16 16 C -0.18 -3.64 10.18 30.62 0.31 -3.33 16 17 C -0.16 -2.91 10.25 30.62 0.31 -2.60 16 18 C -0.04 -2.04 4.30 -19.86 -0.09 -2.12 16 19 C -0.11 -5.16 8.31 22.27 0.19 -4.97 16 20 C -0.13 -5.17 10.05 22.27 0.22 -4.95 16 21 C -0.14 -4.93 10.05 22.27 0.22 -4.71 16 22 C -0.13 -4.78 10.05 22.27 0.22 -4.55 16 23 C -0.14 -6.45 9.67 22.27 0.22 -6.24 16 24 H 0.27 13.67 8.31 -92.71 -0.77 12.90 16 25 H 0.41 15.23 8.29 -92.71 -0.77 14.46 16 26 H 0.06 1.87 8.14 -2.39 -0.02 1.86 16 27 H 0.05 1.71 7.88 -2.39 -0.02 1.69 16 28 H 0.12 2.68 8.04 -2.39 -0.02 2.66 16 29 H 0.09 1.96 8.03 -2.39 -0.02 1.95 16 30 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.10 1.78 8.14 -2.38 -0.02 1.76 16 33 H 0.09 4.55 7.89 -2.91 -0.02 4.53 16 34 H 0.14 4.29 8.06 -2.91 -0.02 4.27 16 35 H 0.15 3.85 8.06 -2.91 -0.02 3.83 16 36 H 0.14 4.17 8.06 -2.91 -0.02 4.15 16 37 H 0.11 4.74 7.95 -2.91 -0.02 4.72 16 Total: -1.00 -62.89 319.53 3.32 -59.57 By element: Atomic # 1 Polarization: 35.24 SS G_CDS: 0.29 Total: 35.53 kcal Atomic # 6 Polarization: -32.17 SS G_CDS: 3.30 Total: -28.87 kcal Atomic # 7 Polarization: -76.65 SS G_CDS: -2.25 Total: -78.90 kcal Atomic # 8 Polarization: -30.77 SS G_CDS: -0.05 Total: -30.81 kcal Atomic # 14 Polarization: 41.45 SS G_CDS: 2.03 Total: 43.48 kcal Total: -62.89 3.32 -59.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001125345900.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.239 kcal (2) G-P(sol) polarization free energy of solvation -62.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds