Wall clock time and date at job start Sun Mar 29 2020 23:51:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 120.00005 * 2 1 4 4 H 1.48511 * 109.46821 * 269.99842 * 3 2 1 5 5 H 1.48494 * 109.47592 * 29.99915 * 3 2 1 6 6 H 1.48503 * 109.47365 * 150.00228 * 3 2 1 7 7 C 1.37875 * 119.99655 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99836 * 186.38896 * 7 2 1 9 9 C 1.50706 * 120.00270 * 6.38815 * 7 2 1 10 10 H 1.09004 * 109.46716 * 333.93541 * 9 7 2 11 11 C 1.50698 * 109.47048 * 213.93654 * 9 7 2 12 12 O 1.21284 * 120.00014 * 240.00234 * 11 9 7 13 13 N 1.34778 * 120.00070 * 59.72554 * 11 9 7 14 14 C 1.46498 * 119.99974 * 180.27415 * 13 11 9 15 15 C 1.53775 * 113.61509 * 254.13511 * 14 13 11 16 16 C 1.53959 * 87.02211 * 220.04884 * 15 14 13 17 17 C 1.53777 * 87.10686 * 25.36074 * 16 15 14 18 18 C 1.50698 * 109.47071 * 93.93651 * 9 7 2 19 19 C 1.38236 * 120.00201 * 53.84667 * 18 9 7 20 20 C 1.38227 * 120.00119 * 179.78637 * 19 18 9 21 21 C 1.38238 * 119.99963 * 0.44547 * 20 19 18 22 22 C 1.38234 * 120.00063 * 359.81186 * 21 20 19 23 23 C 1.38234 * 119.99719 * 359.97438 * 22 21 20 24 24 H 0.96997 * 119.99933 * 359.97438 * 1 2 3 25 25 H 0.96997 * 119.99804 * 0.27416 * 13 11 9 26 26 H 1.09005 * 112.85212 * 25.33488 * 14 13 11 27 27 H 1.08999 * 113.61618 * 334.56691 * 15 14 13 28 28 H 1.08998 * 113.61372 * 105.47043 * 15 14 13 29 29 H 1.09000 * 113.53345 * 270.81029 * 16 15 14 30 30 H 1.08997 * 113.66887 * 139.93386 * 16 15 14 31 31 H 1.09006 * 113.61294 * 220.08582 * 17 16 15 32 32 H 1.09006 * 113.68827 * 89.20283 * 17 16 15 33 33 H 1.08005 * 119.99587 * 359.97438 * 19 18 9 34 34 H 1.08007 * 120.00056 * 180.27268 * 20 19 18 35 35 H 1.07997 * 120.00001 * 179.82926 * 21 20 19 36 36 H 1.08002 * 120.00090 * 180.02562 * 22 21 20 37 37 H 1.07998 * 120.00005 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4002 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0794 -1.1970 0.1046 9 6 1.2579 -2.4952 -0.1441 10 1 0.2374 -2.3708 0.2182 11 6 1.9504 -3.5639 0.6618 12 8 2.3789 -4.5562 0.1118 13 7 2.0983 -3.4143 1.9931 14 6 2.7768 -4.4504 2.7756 15 6 1.8219 -5.3036 3.6271 16 6 2.8888 -5.2472 4.7357 17 6 3.3714 -3.9344 4.0966 18 6 1.2299 -2.8996 -1.5955 19 6 2.4096 -2.9927 -2.3101 20 6 2.3843 -3.3679 -3.6402 21 6 1.1784 -3.6411 -4.2584 22 6 -0.0018 -3.5429 -3.5454 23 6 0.0240 -3.1720 -2.2140 24 1 -0.4850 0.8400 0.0004 25 1 1.7556 -2.6207 2.4330 26 1 3.4766 -5.0389 2.1822 27 1 0.8946 -4.7931 3.8873 28 1 1.6577 -6.3047 3.2285 29 1 3.6187 -6.0547 4.6787 30 1 2.4745 -5.1196 5.7357 31 1 4.4565 -3.8317 4.0764 32 1 2.8695 -3.0480 4.4846 33 1 3.3514 -2.7751 -1.8281 34 1 3.3064 -3.4449 -4.1973 35 1 1.1584 -3.9316 -5.2984 36 1 -0.9438 -3.7568 -4.0283 37 1 -0.8980 -3.0957 -1.6568 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001129634465.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:51:47 Heat of formation + Delta-G solvation = -5.927170 kcal Electronic energy + Delta-G solvation = -19141.859512 eV Core-core repulsion = 16269.977819 eV Total energy + Delta-G solvation = -2871.881692 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.46046 -38.34281 -37.10007 -33.63123 -32.39981 -31.05093 -29.92672 -27.46961 -25.46581 -24.73551 -23.51897 -21.58641 -20.84288 -19.63537 -19.05596 -16.76289 -16.24050 -15.97390 -15.69665 -14.95505 -14.47890 -14.16980 -13.97752 -13.54089 -13.14210 -12.51932 -12.39782 -12.31696 -12.25162 -12.04794 -11.67642 -11.44665 -11.10178 -11.06355 -11.00301 -10.43185 -10.38500 -10.27087 -10.22838 -9.95694 -9.42763 -8.77107 -8.54287 -8.23640 -7.93556 -7.59960 -6.27742 -4.32593 2.38558 2.41637 3.20328 3.27795 3.29356 3.72761 4.14573 4.28884 4.75892 4.81639 4.84457 5.06290 5.11222 5.17143 5.73017 5.75163 5.79364 5.82585 5.87560 5.91286 5.97210 6.13839 6.21281 6.25895 6.31357 6.49630 6.59497 6.64567 6.88729 6.99072 7.19398 7.33184 7.37892 7.46191 7.63382 7.77346 7.97040 8.08951 8.46053 8.72055 9.28631 9.34588 10.80946 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.013968 B = 0.008112 C = 0.005768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2004.120056 B = 3450.708552 C = 4853.615837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.074 3.926 3 Si 0.897 3.103 4 H -0.277 1.277 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.514 4.514 8 H 0.062 0.938 9 C 0.047 3.953 10 H 0.091 0.909 11 C 0.528 3.472 12 O -0.570 6.570 13 N -0.719 5.719 14 C 0.125 3.875 15 C -0.155 4.155 16 C -0.140 4.140 17 C -0.148 4.148 18 C -0.011 4.011 19 C -0.085 4.085 20 C -0.134 4.134 21 C -0.149 4.149 22 C -0.132 4.132 23 C -0.120 4.120 24 H 0.267 0.733 25 H 0.406 0.594 26 H 0.106 0.894 27 H 0.082 0.918 28 H 0.066 0.934 29 H 0.079 0.921 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.085 0.915 33 H 0.111 0.889 34 H 0.106 0.894 35 H 0.105 0.895 36 H 0.106 0.894 37 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.237 -5.479 4.304 7.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.130 4.130 3 Si 0.724 3.276 4 H -0.203 1.203 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.551 4.551 8 H 0.080 0.920 9 C 0.026 3.974 10 H 0.109 0.891 11 C 0.318 3.682 12 O -0.449 6.449 13 N -0.370 5.370 14 C 0.019 3.981 15 C -0.194 4.194 16 C -0.178 4.178 17 C -0.186 4.186 18 C -0.012 4.012 19 C -0.103 4.103 20 C -0.153 4.153 21 C -0.167 4.167 22 C -0.150 4.150 23 C -0.139 4.139 24 H 0.077 0.923 25 H 0.241 0.759 26 H 0.124 0.876 27 H 0.101 0.899 28 H 0.085 0.915 29 H 0.097 0.903 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.104 0.896 33 H 0.129 0.871 34 H 0.124 0.876 35 H 0.123 0.877 36 H 0.124 0.876 37 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 2.372 -6.045 3.904 7.577 hybrid contribution 0.238 1.413 0.120 1.438 sum 2.610 -4.633 4.024 6.668 Atomic orbital electron populations 1.69883 1.06003 1.27421 1.48249 1.24958 0.94898 0.99450 0.93723 0.86502 0.79851 0.82704 0.78509 1.20328 1.21067 1.19639 1.20680 0.93458 0.88650 1.52326 0.91982 1.18149 0.99824 0.91850 0.87573 0.89072 1.21636 0.77803 0.86954 0.81811 1.90567 1.51113 1.32222 1.71037 1.45921 1.59887 1.23012 1.08185 1.22328 0.94838 0.90522 0.90386 1.23480 0.98234 1.00878 0.96853 1.22709 0.99002 0.97897 0.98171 1.23308 1.01084 0.97912 0.96301 1.20072 0.92101 0.91847 0.97220 1.20830 0.98339 0.97885 0.93245 1.20958 0.97043 1.01848 0.95414 1.20796 0.93054 1.03993 0.98871 1.20900 0.97223 1.02013 0.94860 1.21001 0.97820 1.00343 0.94697 0.92343 0.75923 0.87634 0.89915 0.91517 0.90274 0.91355 0.91253 0.89644 0.87110 0.87591 0.87713 0.87555 0.87004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.19 12.78 55.43 0.71 -22.49 16 2 C 0.07 1.89 5.45 -17.82 -0.10 1.79 16 3 Si 0.90 20.05 29.54 -169.99 -5.02 15.03 16 4 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 6 H -0.27 -5.98 7.11 56.52 0.40 -5.57 16 7 C -0.51 -12.90 7.45 -34.44 -0.26 -13.15 16 8 H 0.06 1.58 7.82 -52.49 -0.41 1.17 16 9 C 0.05 1.13 2.44 -94.07 -0.23 0.90 16 10 H 0.09 2.32 7.00 -51.93 -0.36 1.95 16 11 C 0.53 11.91 7.04 -10.99 -0.08 11.83 16 12 O -0.57 -14.08 15.04 5.55 0.08 -13.99 16 13 N -0.72 -13.50 5.26 -53.02 -0.28 -13.77 16 14 C 0.13 1.97 4.21 -67.12 -0.28 1.69 16 15 C -0.16 -2.09 7.89 -25.83 -0.20 -2.29 16 16 C -0.14 -1.54 8.09 -25.83 -0.21 -1.75 16 17 C -0.15 -1.84 7.83 -25.92 -0.20 -2.05 16 18 C -0.01 -0.27 4.30 -104.62 -0.45 -0.72 16 19 C -0.08 -1.94 8.31 -39.59 -0.33 -2.27 16 20 C -0.13 -2.69 10.05 -39.59 -0.40 -3.09 16 21 C -0.15 -2.81 10.05 -39.58 -0.40 -3.21 16 22 C -0.13 -2.58 10.05 -39.58 -0.40 -2.98 16 23 C -0.12 -2.67 9.67 -39.58 -0.38 -3.05 16 24 H 0.27 6.74 8.31 -40.82 -0.34 6.41 16 25 H 0.41 7.30 8.59 -40.82 -0.35 6.95 16 26 H 0.11 1.82 7.50 -51.93 -0.39 1.43 16 27 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 28 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.09 1.03 8.11 -51.93 -0.42 0.61 16 33 H 0.11 2.56 7.89 -52.48 -0.41 2.14 16 34 H 0.11 1.81 8.06 -52.48 -0.42 1.39 16 35 H 0.10 1.64 8.06 -52.49 -0.42 1.21 16 36 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 37 H 0.11 2.39 7.95 -52.49 -0.42 1.97 16 LS Contribution 314.85 15.07 4.74 4.74 Total: -1.00 -28.51 314.85 -8.96 -37.48 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: -5.28 Total: 11.34 kcal Atomic # 6 Polarization: -14.42 SS G_CDS: -3.91 Total: -18.34 kcal Atomic # 7 Polarization: -36.69 SS G_CDS: 0.43 Total: -36.26 kcal Atomic # 8 Polarization: -14.08 SS G_CDS: 0.08 Total: -13.99 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -28.51 -8.96 -37.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001129634465.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.549 kcal (2) G-P(sol) polarization free energy of solvation -28.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds