Wall clock time and date at job start Sun Mar 29 2020 23:51:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 120.00005 * 2 1 4 4 H 1.48511 * 109.46821 * 269.99842 * 3 2 1 5 5 H 1.48494 * 109.47592 * 29.99915 * 3 2 1 6 6 H 1.48503 * 109.47365 * 150.00228 * 3 2 1 7 7 C 1.37875 * 119.99655 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99836 * 186.38896 * 7 2 1 9 9 C 1.50706 * 120.00270 * 6.38815 * 7 2 1 10 10 H 1.09004 * 109.46716 * 333.93541 * 9 7 2 11 11 C 1.50698 * 109.47048 * 213.93654 * 9 7 2 12 12 O 1.21284 * 120.00014 * 240.00234 * 11 9 7 13 13 N 1.34778 * 120.00070 * 59.72554 * 11 9 7 14 14 C 1.46498 * 119.99974 * 180.27415 * 13 11 9 15 15 C 1.53775 * 113.61509 * 254.13511 * 14 13 11 16 16 C 1.53959 * 87.02211 * 220.04884 * 15 14 13 17 17 C 1.53777 * 87.10686 * 25.36074 * 16 15 14 18 18 C 1.50698 * 109.47071 * 93.93651 * 9 7 2 19 19 C 1.38236 * 120.00201 * 53.84667 * 18 9 7 20 20 C 1.38227 * 120.00119 * 179.78637 * 19 18 9 21 21 C 1.38238 * 119.99963 * 0.44547 * 20 19 18 22 22 C 1.38234 * 120.00063 * 359.81186 * 21 20 19 23 23 C 1.38234 * 119.99719 * 359.97438 * 22 21 20 24 24 H 0.96997 * 119.99933 * 359.97438 * 1 2 3 25 25 H 0.96997 * 119.99804 * 0.27416 * 13 11 9 26 26 H 1.09005 * 112.85212 * 25.33488 * 14 13 11 27 27 H 1.08999 * 113.61618 * 334.56691 * 15 14 13 28 28 H 1.08998 * 113.61372 * 105.47043 * 15 14 13 29 29 H 1.09000 * 113.53345 * 270.81029 * 16 15 14 30 30 H 1.08997 * 113.66887 * 139.93386 * 16 15 14 31 31 H 1.09006 * 113.61294 * 220.08582 * 17 16 15 32 32 H 1.09006 * 113.68827 * 89.20283 * 17 16 15 33 33 H 1.08005 * 119.99587 * 359.97438 * 19 18 9 34 34 H 1.08007 * 120.00056 * 180.27268 * 20 19 18 35 35 H 1.07997 * 120.00001 * 179.82926 * 21 20 19 36 36 H 1.08002 * 120.00090 * 180.02562 * 22 21 20 37 37 H 1.07998 * 120.00005 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4002 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0794 -1.1970 0.1046 9 6 1.2579 -2.4952 -0.1441 10 1 0.2374 -2.3708 0.2182 11 6 1.9504 -3.5639 0.6618 12 8 2.3789 -4.5562 0.1118 13 7 2.0983 -3.4143 1.9931 14 6 2.7768 -4.4504 2.7756 15 6 1.8219 -5.3036 3.6271 16 6 2.8888 -5.2472 4.7357 17 6 3.3714 -3.9344 4.0966 18 6 1.2299 -2.8996 -1.5955 19 6 2.4096 -2.9927 -2.3101 20 6 2.3843 -3.3679 -3.6402 21 6 1.1784 -3.6411 -4.2584 22 6 -0.0018 -3.5429 -3.5454 23 6 0.0240 -3.1720 -2.2140 24 1 -0.4850 0.8400 0.0004 25 1 1.7556 -2.6207 2.4330 26 1 3.4766 -5.0389 2.1822 27 1 0.8946 -4.7931 3.8873 28 1 1.6577 -6.3047 3.2285 29 1 3.6187 -6.0547 4.6787 30 1 2.4745 -5.1196 5.7357 31 1 4.4565 -3.8317 4.0764 32 1 2.8695 -3.0480 4.4846 33 1 3.3514 -2.7751 -1.8281 34 1 3.3064 -3.4449 -4.1973 35 1 1.1584 -3.9316 -5.2984 36 1 -0.9438 -3.7568 -4.0283 37 1 -0.8980 -3.0957 -1.6568 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001129634465.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:51:47 Heat of formation + Delta-G solvation = -21.487674 kcal Electronic energy + Delta-G solvation = -19142.534266 eV Core-core repulsion = 16269.977819 eV Total energy + Delta-G solvation = -2872.556447 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 259.131 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.02926 -39.79508 -38.62667 -35.52187 -33.97457 -32.84161 -31.55129 -29.20198 -26.54068 -26.30524 -25.08782 -23.22432 -22.42965 -21.10460 -20.45433 -18.66036 -17.72778 -17.67940 -17.21037 -16.34851 -16.14177 -15.73418 -15.64328 -15.17188 -14.76027 -14.09169 -14.05338 -13.73206 -13.46819 -13.35301 -13.32405 -13.09704 -12.88853 -12.77287 -12.25152 -12.14333 -11.95884 -11.64955 -11.51096 -11.33609 -11.25118 -10.71625 -10.36843 -9.76896 -9.57385 -9.27518 -8.22791 -6.33014 0.73873 0.78977 1.41117 1.44141 1.52264 1.95059 2.41895 2.62284 3.06897 3.26478 3.66489 3.77829 3.99857 4.03755 4.20897 4.29080 4.38117 4.46606 4.53385 4.78072 4.82909 4.84338 4.87930 4.96066 5.06402 5.08063 5.11744 5.19064 5.35574 5.43270 5.46763 5.63327 5.76836 5.78769 5.85087 5.94972 6.22691 6.39457 6.71670 6.83393 7.33468 7.58093 8.85664 Molecular weight = 259.13amu Principal moments of inertia in cm(-1) A = 0.013968 B = 0.008112 C = 0.005768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2004.120056 B = 3450.708552 C = 4853.615837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.035 3.965 3 Si 0.954 3.046 4 H -0.283 1.283 5 H -0.278 1.278 6 H -0.266 1.266 7 C -0.515 4.515 8 H 0.052 0.948 9 C 0.050 3.950 10 H 0.068 0.932 11 C 0.525 3.475 12 O -0.597 6.597 13 N -0.709 5.709 14 C 0.103 3.897 15 C -0.154 4.154 16 C -0.120 4.120 17 C -0.139 4.139 18 C -0.042 4.042 19 C -0.111 4.111 20 C -0.135 4.135 21 C -0.143 4.143 22 C -0.129 4.129 23 C -0.145 4.145 24 H 0.268 0.732 25 H 0.408 0.592 26 H 0.086 0.914 27 H 0.083 0.917 28 H 0.062 0.938 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.078 0.922 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.136 0.864 35 H 0.148 0.852 36 H 0.141 0.859 37 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.721 -5.670 4.185 7.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.167 4.167 3 Si 0.779 3.221 4 H -0.209 1.209 5 H -0.203 1.203 6 H -0.190 1.190 7 C -0.553 4.553 8 H 0.070 0.930 9 C 0.028 3.972 10 H 0.086 0.914 11 C 0.314 3.686 12 O -0.479 6.479 13 N -0.359 5.359 14 C -0.002 4.002 15 C -0.193 4.193 16 C -0.158 4.158 17 C -0.177 4.177 18 C -0.043 4.043 19 C -0.129 4.129 20 C -0.153 4.153 21 C -0.161 4.161 22 C -0.146 4.146 23 C -0.163 4.163 24 H 0.077 0.923 25 H 0.244 0.756 26 H 0.104 0.896 27 H 0.102 0.898 28 H 0.081 0.919 29 H 0.110 0.890 30 H 0.109 0.891 31 H 0.096 0.904 32 H 0.110 0.890 33 H 0.113 0.887 34 H 0.154 0.846 35 H 0.166 0.834 36 H 0.159 0.841 37 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 2.863 -6.240 3.830 7.862 hybrid contribution 0.077 1.401 0.113 1.408 sum 2.941 -4.839 3.943 6.900 Atomic orbital electron populations 1.69980 1.07073 1.28013 1.49217 1.25584 0.95551 1.02048 0.93527 0.85619 0.79011 0.79360 0.78092 1.20865 1.20332 1.18983 1.20722 0.92903 0.89523 1.52156 0.93018 1.18035 0.98407 0.92097 0.88627 0.91406 1.21443 0.77787 0.86339 0.83012 1.90529 1.52492 1.33038 1.71870 1.45900 1.59091 1.23690 1.07192 1.22697 0.95756 0.90618 0.91112 1.23468 0.98598 0.99976 0.97289 1.22665 0.97827 0.97112 0.98200 1.23296 1.01572 0.99066 0.93729 1.20178 0.93296 0.93635 0.97147 1.20857 0.97341 0.99876 0.94871 1.21339 0.99164 1.00420 0.94337 1.21285 0.91965 1.02094 1.00713 1.21311 0.99319 1.00303 0.93702 1.21155 0.97100 1.01734 0.96329 0.92309 0.75590 0.89574 0.89839 0.91949 0.88973 0.89091 0.90374 0.88967 0.88720 0.84573 0.83404 0.84129 0.87521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.82 12.78 21.45 0.27 -48.55 16 2 C 0.03 1.80 5.45 84.65 0.46 2.26 16 3 Si 0.95 41.42 29.54 68.60 2.03 43.44 16 4 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 5 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 6 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 7 C -0.52 -26.73 7.45 25.60 0.19 -26.54 16 8 H 0.05 2.73 7.82 -2.91 -0.02 2.70 16 9 C 0.05 2.49 2.44 -13.03 -0.03 2.46 16 10 H 0.07 3.66 7.00 -2.38 -0.02 3.64 16 11 C 0.52 24.75 7.04 87.66 0.62 25.37 16 12 O -0.60 -30.77 15.04 -3.04 -0.05 -30.81 16 13 N -0.71 -27.45 5.26 -440.05 -2.31 -29.76 16 14 C 0.10 3.26 4.21 45.51 0.19 3.45 16 15 C -0.15 -4.03 7.89 31.18 0.25 -3.79 16 16 C -0.12 -2.35 8.09 31.18 0.25 -2.09 16 17 C -0.14 -3.24 7.83 31.12 0.24 -2.99 16 18 C -0.04 -2.04 4.30 -19.87 -0.09 -2.13 16 19 C -0.11 -5.18 8.31 22.27 0.19 -4.99 16 20 C -0.13 -5.20 10.05 22.27 0.22 -4.97 16 21 C -0.14 -4.96 10.05 22.27 0.22 -4.74 16 22 C -0.13 -4.80 10.05 22.27 0.22 -4.57 16 23 C -0.14 -6.53 9.67 22.27 0.22 -6.31 16 24 H 0.27 13.73 8.31 -92.71 -0.77 12.96 16 25 H 0.41 15.13 8.59 -92.71 -0.80 14.33 16 26 H 0.09 3.07 7.50 -2.38 -0.02 3.05 16 27 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 28 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16 32 H 0.09 2.05 8.11 -2.38 -0.02 2.03 16 33 H 0.09 4.57 7.89 -2.91 -0.02 4.55 16 34 H 0.14 4.31 8.06 -2.91 -0.02 4.29 16 35 H 0.15 3.87 8.06 -2.91 -0.02 3.85 16 36 H 0.14 4.20 8.06 -2.91 -0.02 4.18 16 37 H 0.11 4.74 7.95 -2.91 -0.02 4.72 16 Total: -1.00 -63.03 314.85 3.36 -59.67 By element: Atomic # 1 Polarization: 35.35 SS G_CDS: 0.26 Total: 35.61 kcal Atomic # 6 Polarization: -32.75 SS G_CDS: 3.16 Total: -29.59 kcal Atomic # 7 Polarization: -76.27 SS G_CDS: -2.04 Total: -78.31 kcal Atomic # 8 Polarization: -30.77 SS G_CDS: -0.05 Total: -30.81 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 2.03 Total: 43.44 kcal Total: -63.03 3.36 -59.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001129634465.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.179 kcal (2) G-P(sol) polarization free energy of solvation -63.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds